Variant report

Variant	nsv10269
Chromosome Location	chr3:46794104-46851717
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:140)
CpG islands
(count:427)
Chromatin interactive
region (count:18)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:140 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr3:46834909-46835249	GM12878	blood:	n/a	n/a
2	BATF	chr3:46834950-46835224	GM12878	blood:	n/a	n/a
3	BCL11A	chr3:46834834-46835220	GM12878	blood:	n/a	n/a
4	BHLHE40	chr3:46798309-46798511	K562	blood:	n/a	n/a
5	CBX3	chr3:46805384-46805615	K562	blood:	n/a	n/a
6	CBX3	chr3:46798157-46798548	K562	blood:	n/a	n/a
7	CEBPB	chr3:46839064-46839245	Hela-S3	cervix:	n/a	n/a
8	CHD2	chr3:46798433-46798503	HepG2	liver:	n/a	n/a
9	CHD2	chr3:46798208-46798651	K562	blood:	n/a	n/a
10	CTCF	chr3:46846080-46846230	NHEK	skin:	n/a	n/a
11	CTCF	chr3:46794520-46794670	GM12864	blood:	n/a	n/a
12	CTCF	chr3:46797989-46798564	K562	blood:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
13	CTCF	chr3:46794616-46794658	GM19240	blood:	n/a	n/a
14	CTCF	chr3:46798280-46798430	K562	blood:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
15	CTCF	chr3:46798156-46798539	K562	blood:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
16	CTCF	chr3:46794500-46794650	GM12872	blood:	n/a	n/a
17	CTCF	chr3:46794460-46794610	Hela-S3	cervix:	n/a	n/a
18	CTCF	chr3:46794500-46794650	GM12866	blood:	n/a	n/a
19	CTCF	chr3:46798400-46798550	HVMF	connective:	n/a	n/a
20	CTCF	chr3:46794360-46794510	GM12873	blood:	n/a	n/a
21	CTCF	chr3:46798034-46798529	K562	blood:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
22	CTCF	chr3:46798354-46798408	Gliobla	brain:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
23	CTCF	chr3:46846140-46846290	HCPEpiC	choroid plexus:	n/a	n/a
24	CTCF	chr3:46798300-46798450	K562	blood:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
25	CTCF	chr3:46801730-46801825	HUVEC	blood vessel:	n/a	n/a
26	CTCF	chr3:46798359-46798450	LNCaP	prostate:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
27	CTCF	chr3:46798134-46798571	K562	blood:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
28	CTCF	chr3:46850100-46850250	GM12864	blood:	n/a	chr3:46850217-46850226
29	CTCF	chr3:46794460-46794610	GM06990	blood:	n/a	n/a
30	CTCF	chr3:46798336-46798412	H1-hESC	embryonic stem cell:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
31	CTCF	chr3:46846100-46846250	HCPEpiC	choroid plexus:	n/a	n/a
32	CTCF	chr3:46798280-46798435	HepG2	liver:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
33	CTCF	chr3:46794600-46794750	GM12875	blood:	n/a	n/a
34	CTCF	chr3:46794500-46794650	GM12873	blood:	n/a	n/a
35	CTCF	chr3:46798136-46798509	K562	blood:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
36	CTCF	chr3:46794180-46794330	GM12873	blood:	n/a	n/a
37	CTCF	chr3:46794560-46794710	HCT-116	colon:	n/a	n/a
38	CTCF	chr3:46850080-46850230	GM12873	blood:	n/a	chr3:46850217-46850226
39	CTCF	chr3:46819600-46819750	GM12873	blood:	n/a	n/a
40	CTCF	chr3:46846160-46846310	HBMEC	blood vessel:	n/a	n/a
41	CTCF	chr3:46850120-46850270	GM12873	blood:	n/a	chr3:46850217-46850226
42	CTCF	chr3:46850200-46850350	GM12864	blood:	n/a	chr3:46850217-46850226
43	CTCF	chr3:46798300-46798450	HepG2	liver:	n/a	chr3:46798379-46798397 chr3:46798381-46798394 chr3:46798380-46798396
44	CTCF	chr3:46846120-46846270	MCF-7	breast:	n/a	n/a
45	CTCFL	chr3:46798258-46798497	K562	blood:	n/a	n/a
46	CTCFL	chr3:46798305-46798476	K562	blood:	n/a	n/a
47	E2F4	chr3:46799519-46799724	MCF10A-Er-Src	breast:	n/a	n/a
48	E2F6	chr3:46798300-46798501	K562	blood:	n/a	n/a
49	E2F6	chr3:46798276-46798526	K562	blood:	n/a	n/a
50	EBF1	chr3:46821837-46822068	GM12878	blood:	n/a	chr3:46821936-46821947 chr3:46821916-46821927

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:46801208-46801258	ECC-1	luminal epithelium:	n/a
2	chr3:46794154-46794204	CMK	blood:	n/a
3	chr3:46797928-46797978	HCPEpiC	choroid plexus:	n/a
4	chr3:46801208-46801258	Jurkat	blood:	n/a
5	chr3:46799010-46799060	PFSK-1	brain:	n/a
6	chr3:46796026-46796076	MCF10A-Er-Src	breast:	n/a
7	chr3:46799010-46799060	HRPEpiC	eye:	n/a
8	chr3:46801208-46801258	HCM	heart:	n/a
9	chr3:46850588-46850638	ECC-1	luminal epithelium:	n/a
10	chr3:46799010-46799060	NHBE	bronchial:	n/a
11	chr3:46797928-46797978	GM06990	blood:	n/a
12	chr3:46850588-46850638	HRCEpiC	kidney:	n/a
13	chr3:46796026-46796076	ECC-1	luminal epithelium:	n/a
14	chr3:46801208-46801258	BE2_C	brain:	n/a
15	chr3:46794154-46794204	BE2_C	brain:	n/a
16	chr3:46794154-46794204	SK-N-SH_RA	brain:	n/a
17	chr3:46797928-46797978	SK-N-MC	brain:	n/a
18	chr3:46801208-46801258	A549	lung:	n/a
19	chr3:46796026-46796076	GM19239	blood:	n/a
20	chr3:46798240-46798290	LNCaP	prostate:	n/a
21	chr3:46796026-46796076	NHDF-neo	bronchial:	n/a
22	chr3:46794154-46794204	BJ	skin:	n/a
23	chr3:46850588-46850638	PANC-1	pancreas:	n/a
24	chr3:46850588-46850638	HEEpiC	esophagus:	n/a
25	chr3:46797928-46797978	HRCEpiC	kidney:	n/a
26	chr3:46798240-46798290	HPAEpiC	pulmonary alveolar:	n/a
27	chr3:46796026-46796076	Caco-2	colon:	n/a
28	chr3:46850588-46850638	BE2_C	brain:	n/a
29	chr3:46850588-46850638	GM12878	blood:	n/a
30	chr3:46799010-46799060	NT2-D1	testis:	n/a
31	chr3:46799010-46799060	HepG2	liver:	n/a
32	chr3:46794154-46794204	ProgFib	skin:	n/a
33	chr3:46796026-46796076	HCPEpiC	choroid plexus:	n/a
34	chr3:46794154-46794204	SK-N-SH	brain:	n/a
35	chr3:46797928-46797978	BJ	skin:	n/a
36	chr3:46796026-46796076	U87	brain:	n/a
37	chr3:46801208-46801258	SKMC	muscle:	n/a
38	chr3:46796026-46796076	GM12892	blood:	n/a
39	chr3:46794154-46794204	GM06990	blood:	n/a
40	chr3:46801208-46801258	GM12892	blood:	n/a
41	chr3:46798240-46798290	NHBE	bronchial:	n/a
42	chr3:46798240-46798290	AG10803	skin:	n/a
43	chr3:46850588-46850638	A549	lung:	n/a
44	chr3:46796026-46796076	SK-N-SH	brain:	n/a
45	chr3:46796026-46796076	NHBE	bronchial:	n/a
46	chr3:46801208-46801258	NB4	blood:	n/a
47	chr3:46850588-46850638	AG10803	skin:	n/a
48	chr3:46799010-46799060	HCM	heart:	n/a
49	chr3:46794154-46794204	AG09319	gingival:	n/a
50	chr3:46798240-46798290	SK-N-MC	brain:	n/a

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:46796204..46798578-chr3:46800470..46803401,3	K562	blood:
2	chr3:46796974..46798578-chr3:46800470..46803376,2	K562	blood:
3	chr3:46803507..46806312-chr3:46807817..46810409,2	K562	blood:
4	chr3:46796974..46798578-chr3:46800470..46803376,2	K562	blood:
5	chr3:46774758..46775741-chr3:46797694..46798443,2	K562	blood:
6	chr3:46796598..46799185-chr3:46799676..46801957,2	MCF-7	breast:
7	chr3:46746227..46747136-chr3:46797879..46798830,2	K562	blood:
8	chr3:46803507..46806312-chr3:46807817..46810409,2	K562	blood:
9	chr3:46792775..46794351-chr3:46906387..46908133,2	K562	blood:
10	chr3:46788120..46791042-chr3:46798895..46800766,2	K562	blood:
11	chr3:46798748..46799515-chr3:46907913..46908649,2	K562	blood:
12	chr3:46787160..46789838-chr3:46792836..46795181,2	K562	blood:
13	chr3:46789981..46792010-chr3:46794604..46797550,3	K562	blood:
14	chr3:46819637..46822469-chr3:46912934..46914923,2	K562	blood:
15	chr3:46847486..46849953-chr3:46878692..46880394,2	K562	blood:
16	chr3:46789741..46793223-chr3:46794604..46798425,5	K562	blood:
17	chr3:46796598..46799185-chr3:46799676..46801957,2	MCF-7	breast:
18	chr3:46796204..46798578-chr3:46800470..46803401,3	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTH1R-2	chr3:46839613-46839880	NONHSAT089458
2	lnc-PRSS50-1	chr3:46795974-46796138	NONHSAT089457
3	lnc-PRSS50-1	chr3:46797532-46798119	NONHSAT089457

No data

Variant related genes	Relation type
ENSG00000238013	TF binding region
ENSG00000238013	CpG island

Extended variants
information (count: 728 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:728 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371527981	chr3:46794111-46794112	Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs548076970	chr3:46794128-46794129	Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs62248377	chr3:46794170-46794171	Weak transcription Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs368854246	chr3:46794197-46794198	Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs374336002	chr3:46794259-46794260	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs552119117	chr3:46794302-46794303	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs573725328	chr3:46794308-46794309	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs534687229	chr3:46794315-46794316	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs576544555	chr3:46794334-46794335	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs35101710	chr3:46794347-46794348	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs553142681	chr3:46794355-46794356	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs568664845	chr3:46794362-46794363	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs536005047	chr3:46794381-46794382	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs557278319	chr3:46794408-46794409	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs58245995	chr3:46794409-46794410	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs546201506	chr3:46794413-46794414	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs59588744	chr3:46794416-46794417	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs573192640	chr3:46794436-46794437	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs184350789	chr3:46794441-46794442	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs561893627	chr3:46794480-46794481	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs189198259	chr3:46794483-46794484	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs72893366	chr3:46794496-46794497	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs563356779	chr3:46794552-46794553	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs530808323	chr3:46794624-46794625	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs181760188	chr3:46794628-46794629	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs573989212	chr3:46794629-46794630	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs59356397	chr3:46794643-46794644	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs144230911	chr3:46794645-46794646	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs546619674	chr3:46794668-46794669	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs377033303	chr3:46794712-46794713	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs57268847	chr3:46794745-46794746	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs148704364	chr3:46794798-46794799	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs533290091	chr3:46794808-46794809	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs569378156	chr3:46794815-46794816	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs545452856	chr3:46794871-46794872	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs540108576	chr3:46794880-46794881	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs186436598	chr3:46794887-46794888	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs143007122	chr3:46794898-46794899	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs572899834	chr3:46794899-46794900	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs563618430	chr3:46794910-46794911	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs533886819	chr3:46794925-46794926	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs188841376	chr3:46794958-46794959	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs542909653	chr3:46795034-46795035	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs554524956	chr3:46795035-46795036	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs61153905	chr3:46795062-46795063	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
46	rs544323992	chr3:46795063-46795064	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs34238793	chr3:46795078-46795079	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs35880732	chr3:46795084-46795085	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs56836203	chr3:46795085-46795086	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs181643407	chr3:46795150-46795151	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Lynch syndrome	18415027	CNVD
Renal cell carcinoma	18592004	CNVD
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
Glioblastoma multiforme	21080181	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Kartagener syndrome	16639409	CNVD
Biliary cancer	19435499	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Breast cancer	21509527	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	16397240	CNVD
Breast cancer	22032731	CNVD
Non-small cell lung cancer	20864512	CNVD
Colorectal cancer	16912164	CNVD
Non-small cell lung cancer	19010865	CNVD
Colorectal cancer	16272173	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute myeloid leukemia	17268525	CNVD
Salivary gland tumor	18059337	CNVD
Gastric cancer	16891809	CNVD
Night blindness	17160897	CNVD
Cancer	17160897	CNVD
Breast cancer	20409316	CNVD
Lung cancer	17297452	CNVD
Multiple myeloma	16616336	CNVD
Effusion lymphoma	18079361	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Urothelial cell carcinoma	18451213	CNVD
Neuroblastoma	17327916	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Melanoma	17363583	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Adrenocortical carcinoma	18281524	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD
Recurrent pregnancy loss	19789632	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46779400-46795400	Weak transcription	Spleen	Spleen
2	chr3:46779400-46799600	Weak transcription	Pancreas	Pancrea
3	chr3:46785200-46799800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:46785800-46795600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:46789200-46794200	Weak transcription	GM12878-XiMat	blood
6	chr3:46792400-46794200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr3:46792400-46797800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:46792800-46795000	Enhancers	Thymus	Thymus
9	chr3:46793400-46795200	Enhancers	Fetal Thymus	thymus
10	chr3:46793400-46800000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:46793800-46794200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:46794200-46795000	Enhancers	GM12878-XiMat	blood
13	chr3:46795000-46796000	Weak transcription	Thymus	Thymus
14	chr3:46795200-46796200	Weak transcription	Fetal Thymus	thymus
15	chr3:46795600-46798000	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:46796000-46796800	Enhancers	Thymus	Thymus
17	chr3:46796400-46796600	Enhancers	Fetal Thymus	thymus
18	chr3:46797600-46797800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr3:46797600-46797800	Bivalent Enhancer	K562	blood
20	chr3:46797600-46798400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr3:46797800-46798400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:46798000-46798600	Enhancers	Placenta	Placenta
23	chr3:46798000-46798600	Active TSS	K562	blood
24	chr3:46798000-46801400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:46798400-46801200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:46800600-46801400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:46801000-46801200	Enhancers	Fetal Stomach	stomach
28	chr3:46801000-46801400	Enhancers	Fetal Kidney	kidney
29	chr3:46801000-46801800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr3:46801000-46801800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr3:46801000-46802000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:46801000-46802000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:46801000-46802000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr3:46801200-46801400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr3:46801200-46801400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:46801200-46801600	Enhancers	H1 Cell Line	embryonic stem cell
37	chr3:46801200-46801600	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr3:46801200-46801600	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr3:46801200-46801600	Enhancers	Fetal Lung	lung
40	chr3:46801200-46801600	Enhancers	Psoas Muscle	Psoas
41	chr3:46801200-46802000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:46801400-46802000	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr3:46801600-46803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr3:46802000-46804400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr3:46804600-46805200	Enhancers	HMEC	breast
46	chr3:46804600-46805400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:46804800-46805000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr3:46804800-46805200	Enhancers	NHEK	skin
49	chr3:46805000-46809200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:46806000-46806200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links