Variant report

Variant	nsv1028479
Chromosome Location	chr7:104409391-104479087
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:190)
CpG islands
(count:428)
Chromatin interactive
region (count:37)
LncRNA
region (count:39)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:190 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr7:104412705-104413324	H1-hESC	embryonic stem cell:	n/a	n/a
2	ATF2	chr7:104412806-104413332	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr7:104448236-104448258	K562	blood:	n/a	n/a
4	BACH1	chr7:104412765-104413374	H1-hESC	embryonic stem cell:	n/a	chr7:104413256-104413270
5	BCL11A	chr7:104412839-104413127	H1-hESC	embryonic stem cell:	n/a	n/a
6	BCL11A	chr7:104412851-104413116	H1-hESC	embryonic stem cell:	n/a	n/a
7	CEBPB	chr7:104433473-104433846	MCF-7	breast:	n/a	chr7:104433674-104433687 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685
8	CEBPB	chr7:104433532-104433845	IMR90	lung:	n/a	chr7:104433674-104433687 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685
9	CEBPB	chr7:104433540-104433841	HepG2	liver:	n/a	chr7:104433674-104433687 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685
10	CEBPB	chr7:104433614-104433830	A549	lung:	n/a	chr7:104433674-104433687 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685
11	CEBPB	chr7:104433566-104433846	K562	blood:	n/a	chr7:104433674-104433687 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685
12	CEBPB	chr7:104433576-104433893	A549	lung:	n/a	chr7:104433674-104433687 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685 chr7:104433676-104433685
13	CEBPB	chr7:104479052-104479240	K562	blood:	n/a	n/a
14	CHD2	chr7:104412777-104413428	H1-hESC	embryonic stem cell:	n/a	n/a
15	CREB1	chr7:104412648-104413476	H1-hESC	embryonic stem cell:	n/a	n/a
16	CREB1	chr7:104412793-104413342	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTBP2	chr7:104412772-104413767	H1-hESC	embryonic stem cell:	n/a	n/a
18	CTCF	chr7:104412820-104412970	Caco-2	colon:	n/a	n/a
19	CTCF	chr7:104453040-104453190	GM12864	blood:	n/a	n/a
20	CTCF	chr7:104412700-104412850	SK-N-SH_RA	brain:	n/a	n/a
21	CTCF	chr7:104412845-104412952	A549	lung:	n/a	n/a
22	CTCF	chr7:104412825-104412978	H1-hESC	embryonic stem cell:	n/a	n/a
23	CTCF	chr7:104467627-104467677	Fibrobl	skin:	n/a	n/a
24	CTCF	chr7:104412800-104412950	GM12872	blood:	n/a	n/a
25	CTCF	chr7:104434868-104434889	Lung_OC	lung:	n/a	n/a
26	CTCF	chr7:104412846-104412909	HUVEC	blood vessel:	n/a	n/a
27	CTCF	chr7:104412735-104413130	H1-hESC	embryonic stem cell:	n/a	n/a
28	EGR1	chr7:104412826-104413187	H1-hESC	embryonic stem cell:	n/a	n/a
29	EP300	chr7:104412749-104413272	H1-hESC	embryonic stem cell:	n/a	chr7:104413088-104413102
30	EP300	chr7:104412755-104413190	H1-hESC	embryonic stem cell:	n/a	chr7:104413088-104413102
31	FAM48A	chr7:104462655-104462779	GM12878	blood:	n/a	n/a
32	FOS	chr7:104436200-104436300	MCF10A-Er-Src	breast:	n/a	chr7:104436250-104436261
33	FOS	chr7:104431490-104431910	MCF10A-Er-Src	breast:	n/a	n/a
34	FOS	chr7:104434647-104434895	MCF10A-Er-Src	breast:	n/a	chr7:104434775-104434783
35	FOS	chr7:104436182-104436326	MCF10A-Er-Src	breast:	n/a	chr7:104436250-104436261
36	FOS	chr7:104431503-104431877	MCF10A-Er-Src	breast:	n/a	n/a
37	FOS	chr7:104435708-104436416	HUVEC	blood vessel:	n/a	chr7:104436250-104436261
38	FOS	chr7:104430863-104431965	HUVEC	blood vessel:	n/a	n/a
39	FOS	chr7:104430909-104431190	MCF10A-Er-Src	breast:	n/a	n/a
40	FOS	chr7:104434724-104434847	MCF10A-Er-Src	breast:	n/a	chr7:104434775-104434783
41	FOS	chr7:104433608-104433860	MCF10A-Er-Src	breast:	n/a	n/a
42	FOS	chr7:104434647-104434952	MCF10A-Er-Src	breast:	n/a	chr7:104434775-104434783
43	FOS	chr7:104430927-104431193	MCF10A-Er-Src	breast:	n/a	n/a
44	FOS	chr7:104431597-104431801	MCF10A-Er-Src	breast:	n/a	n/a
45	FOS	chr7:104433660-104433802	MCF10A-Er-Src	breast:	n/a	n/a
46	FOS	chr7:104434627-104434962	MCF10A-Er-Src	breast:	n/a	chr7:104434775-104434783
47	FOXA2	chr7:104431414-104431815	A549	lung:	n/a	chr7:104431692-104431704
48	FOXA2	chr7:104431559-104431948	A549	lung:	n/a	chr7:104431692-104431704
49	GATA1	chr7:104465552-104466314	PBDE	blood:	n/a	chr7:104465684-104465693
50	GATA1	chr7:104463982-104464388	PBDE	blood:	n/a	n/a

(count:428 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:104445402-104445452	RPTEC	kidney:	n/a
2	chr7:104445402-104445452	RPTEC	kidney:	n/a
3	chr7:104444707-104444757	AG09319	gingival:	n/a
4	chr7:104459130-104459180	SAEC	small airway:	n/a
5	chr7:104445585-104445635	PFSK-1	brain:	n/a
6	chr7:104460407-104460457	MCF-7	breast:	n/a
7	chr7:104445402-104445452	HRPEpiC	eye:	n/a
8	chr7:104413036-104413086	MCF10A-Er-Src	breast:	n/a
9	chr7:104459130-104459180	MCF10A-Er-Src	breast:	n/a
10	chr7:104460407-104460457	SK-N-MC	brain:	n/a
11	chr7:104460407-104460457	NB4	blood:	n/a
12	chr7:104444687-104444737	LNCaP	prostate:	n/a
13	chr7:104444707-104444757	NHBE	bronchial:	n/a
14	chr7:104444687-104444737	AG09319	gingival:	n/a
15	chr7:104444707-104444757	HCF	heart:	n/a
16	chr7:104444707-104444757	PFSK-1	brain:	n/a
17	chr7:104445402-104445452	HCM	heart:	n/a
18	chr7:104444707-104444757	MCF10A-Er-Src	breast:	n/a
19	chr7:104445402-104445452	SK-N-MC	brain:	n/a
20	chr7:104460407-104460457	ECC-1	luminal epithelium:	n/a
21	chr7:104445402-104445452	IMR90	lung:	fetal
22	chr7:104460407-104460457	HEEpiC	esophagus:	n/a
23	chr7:104445402-104445452	NT2-D1	testis:	n/a
24	chr7:104413036-104413086	HIPEpiC	eye:	n/a
25	chr7:104444707-104444757	RPTEC	kidney:	n/a
26	chr7:104460407-104460457	LNCaP	prostate:	n/a
27	chr7:104444707-104444757	Caco-2	colon:	n/a
28	chr7:104459130-104459180	NHBE	bronchial:	n/a
29	chr7:104413036-104413086	HRE	kidney:	n/a
30	chr7:104444707-104444757	HEEpiC	esophagus:	n/a
31	chr7:104459130-104459180	HAEpiC	amniotic membrane:	n/a
32	chr7:104445402-104445452	NHBE	bronchial:	n/a
33	chr7:104460407-104460457	HPAEpiC	pulmonary alveolar:	n/a
34	chr7:104445402-104445452	H1-hESC	embryonic stem cell:	embryo
35	chr7:104460407-104460457	PANC-1	pancreas:	n/a
36	chr7:104460407-104460457	GM19239	blood:	n/a
37	chr7:104444707-104444757	HPAEpiC	pulmonary alveolar:	n/a
38	chr7:104445585-104445635	HCF	heart:	n/a
39	chr7:104459130-104459180	HRCEpiC	kidney:	n/a
40	chr7:104413036-104413086	GM12892	blood:	n/a
41	chr7:104459130-104459180	AoSMC	blood vessel:	n/a
42	chr7:104445402-104445452	SAEC	small airway:	n/a
43	chr7:104444707-104444757	HEK293	kidney:	embryo
44	chr7:104413036-104413086	HCPEpiC	choroid plexus:	n/a
45	chr7:104460407-104460457	HCT-116	colon:	n/a
46	chr7:104413036-104413086	HEEpiC	esophagus:	n/a
47	chr7:104413036-104413086	HCF	heart:	n/a
48	chr7:104413036-104413086	Hela-S3	cervix:	n/a
49	chr7:104445585-104445635	T-47D	breast:	n/a
50	chr7:104413036-104413086	IMR90	lung:	fetal

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:104415972..104418312-chr7:104418747..104420588,2	K562	blood:
2	chr7:104421671..104423208-chr7:104427462..104429131,2	K562	blood:
3	chr7:104423057..104424601-chr7:104428990..104431789,2	MCF-7	breast:
4	chr7:104458052..104460838-chr7:104463968..104465824,2	K562	blood:
5	chr7:104419886..104422032-chr7:104422359..104424194,2	K562	blood:
6	chr7:104421671..104423208-chr7:104427462..104429131,2	K562	blood:
7	chr7:104453530..104456071-chr7:104485897..104488742,2	K562	blood:
8	chr7:104409406..104411368-chr7:104413418..104415967,2	K562	blood:
9	chr7:104458052..104460838-chr7:104463968..104465824,2	K562	blood:
10	chr7:104414380..104416720-chr7:104418892..104421394,2	K562	blood:
11	chr7:104408013..104410317-chr7:104422818..104425471,2	K562	blood:
12	chr7:104415740..104417803-chr7:104432798..104435671,2	K562	blood:
13	chr7:104409406..104411368-chr7:104413418..104415967,2	K562	blood:
14	chr7:103848353..103851254-chr7:104459006..104460903,2	K562	blood:
15	chr7:104455637..104457503-chr7:104461736..104463277,2	K562	blood:
16	chr7:104408013..104410317-chr7:104422818..104425471,2	K562	blood:
17	chr7:104419886..104422032-chr7:104422359..104424194,2	K562	blood:
18	chr7:104403971..104406654-chr7:104407039..104409693,2	K562	blood:
19	chr7:104423057..104424601-chr7:104428990..104431789,2	MCF-7	breast:
20	chr7:104427635..104430340-chr7:104433804..104436120,2	K562	blood:
21	chr7:104302642..104305367-chr7:104448713..104450769,2	K562	blood:
22	chr7:104443017..104446705-chr7:104447012..104450843,4	K562	blood:
23	chr7:104415740..104417803-chr7:104432798..104435671,2	K562	blood:
24	chr7:104412687..104414288-chr7:104414612..104417316,2	K562	blood:
25	chr7:104435065..104437773-chr7:104442766..104444672,2	K562	blood:
26	chr7:104451035..104453878-chr7:104454466..104456364,2	K562	blood:
27	chr7:104435065..104439363-chr7:104442614..104444965,4	K562	blood:
28	chr7:104345772..104348271-chr7:104471773..104473637,2	MCF-7	breast:
29	chr7:104415972..104418312-chr7:104418747..104420588,2	K562	blood:
30	chr7:104451035..104453878-chr7:104454466..104456364,2	K562	blood:
31	chr7:104412687..104414288-chr7:104414612..104417316,2	K562	blood:
32	chr7:104189213..104191693-chr7:104438258..104440897,2	K562	blood:
33	chr7:104455637..104457503-chr7:104461736..104463277,2	K562	blood:
34	chr7:104427635..104430340-chr7:104433804..104436120,2	K562	blood:
35	chr7:104438743..104441735-chr7:104443965..104445982,2	K562	blood:
36	chr7:104414380..104416720-chr7:104418892..104421394,2	K562	blood:
37	chr7:104432454..104433087-chrX:39058476..39059438,2	MCF-7	breast:

(count:39 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SRPK2-4	chr7:104426965-104427028	ENSG00000226869.2
2	lnc-SRPK2-4	chr7:104444403-104444533	ENSG00000226869.2
3	lnc-SRPK2-4	chr7:104439840-104440516	ENSG00000226869.2
4	lnc-SRPK2-4	chr7:104440265-104440516	ENSG00000226869.2
5	lnc-SRPK2-4	chr7:104443286-104443410	NONHSAT122570
6	lnc-SRPK2-4	chr7:104409432-104411609	ucscGeneNc_uc003vcj_1
7	lnc-SRPK2-4	chr7:104443899-104443986	ENSG00000226869.2
8	lnc-SRPK2-4	chr7:104443286-104443410	NONHSAT122568
9	lnc-SRPK2-4	chr7:104439447-104440516	NONHSAT122570
10	lnc-SRPK2-4	chr7:104440265-104440516	ENSG00000226869.2
11	lnc-SRPK2-4	chr7:104443286-104443410	ENSG00000226869.2
12	lnc-SRPK2-4	chr7:104436954-104437396	NONHSAT122568
13	lnc-MLL5-9	chr7:104443904-104444763	expReg_chr7_7219_+
14	lnc-SRPK2-4	chr7:104436953-104437396	ENSG00000226869.2
15	lnc-SRPK2-4	chr7:104444403-104444535	ENSG00000226869.2
16	lnc-SRPK2-4	chr7:104436963-104437396	ENSG00000226869.2
17	lnc-SRPK2-4	chr7:104444403-104444554	ENSG00000226869.2
18	lnc-SRPK2-4	chr7:104440265-104440516	NONHSAT122568
19	lnc-SRPK2-4	chr7:104443286-104443410	ENSG00000226869.2
20	lnc-MLL5-7	chr7:104466783-104467243	NONHSAT122572
21	lnc-SRPK2-4	chr7:104440265-104440516	ENSG00000226869.2
22	lnc-SRPK2-4	chr7:104409116-104409463	ENSG00000226869.2
23	lnc-MLL5-8	chr7:104456917-104457497	expReg_chr7_7241_+
24	lnc-SRPK2-4	chr7:104438784-104438854	ENSG00000226869.2
25	lnc-SRPK2-4	chr7:104443286-104443410	ENSG00000226869.2
26	lnc-SRPK2-4	chr7:104444403-104444539	NONHSAT122568
27	lnc-SRPK2-4	chr7:104425659-104425805	ENSG00000226869.2
28	lnc-SRPK2-4	chr7:104444403-104444531	ENSG00000226869.2
29	lnc-SRPK2-4	chr7:104443286-104443410	ENSG00000226869.2
30	lnc-SRPK2-4	chr7:104443286-104443410	ENSG00000226869.2
31	lnc-SRPK2-4	chr7:104426178-104426232	ENSG00000226869.2
32	lnc-MLL5-10	chr7:104442608-104443160	expReg_chr7_7212_+
33	lnc-SRPK2-4	chr7:104443286-104443410	ENSG00000226869.2
34	lnc-SRPK2-4	chr7:104440265-104440516	ENSG00000226869.2
35	lnc-SRPK2-4	chr7:104438784-104438854	ENSG00000226869.2
36	lnc-SRPK2-4	chr7:104444403-104444554	ENSG00000226869.2
37	lnc-SRPK2-4	chr7:104438225-104441824	l_3463_NR_024586
38	lnc-SRPK2-4	chr7:104444403-104444539	NONHSAT122570
39	lnc-SRPK2-4	chr7:104440265-104440516	ENSG00000226869.2

No data

Variant related genes	Relation type
LHFPL3-AS1	TF binding region
ENSG00000237606	TF binding region
LHFPL3-AS1	CpG island
ENSG00000237606	CpG island
ENSG00000164815	chromatin interactions
ENSG00000226869	chromatin interactions

Extended variants
information (count: 2593 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:2593 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs41373345	chr7:104409391-104409392	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs79630455	chr7:104409470-104409471	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs566674291	chr7:104409590-104409591	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
4	rs143193367	chr7:104409599-104409600	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs148265294	chr7:104409628-104409629	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs560223461	chr7:104409638-104409639	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs529928133	chr7:104409648-104409649	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs370843179	chr7:104409671-104409672	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs575525999	chr7:104409677-104409678	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs79696100	chr7:104409683-104409684	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
11	rs554574957	chr7:104409688-104409689	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs572744869	chr7:104409775-104409776	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs375397618	chr7:104409809-104409810	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs11773056	chr7:104409839-104409840	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs184444386	chr7:104409844-104409845	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs540333127	chr7:104409890-104409891	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs560285629	chr7:104409939-104409940	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs574167457	chr7:104409944-104409945	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs543240012	chr7:104409960-104409961	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs563018284	chr7:104409971-104409972	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs10263403	chr7:104409980-104409981	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs369084535	chr7:104409989-104409990	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs28647236	chr7:104409998-104409999	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs372024018	chr7:104410003-104410004	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs188952496	chr7:104410004-104410005	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
26	rs375328698	chr7:104410006-104410007	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs546737739	chr7:104410012-104410013	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs113663282	chr7:104410013-104410014	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs549209149	chr7:104410033-104410034	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs569050405	chr7:104410035-104410036	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs4727611	chr7:104410044-104410045	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs28446081	chr7:104410051-104410052	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs28432670	chr7:104410053-104410054	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
34	rs376863812	chr7:104410058-104410059	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs4727612	chr7:104410065-104410066	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
36	rs181767224	chr7:104410071-104410072	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
37	rs184707825	chr7:104410080-104410081	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
38	rs574107407	chr7:104410081-104410082	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
39	rs575362083	chr7:104410086-104410087	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
40	rs189596253	chr7:104410088-104410089	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
41	rs61115409	chr7:104410089-104410090	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
42	rs113823746	chr7:104410103-104410104	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
43	rs13244802	chr7:104410114-104410115	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
44	rs545717678	chr7:104410137-104410138	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
45	rs547273824	chr7:104410152-104410153	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
46	rs565536055	chr7:104410153-104410154	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
47	rs532767089	chr7:104410183-104410184	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
48	rs34550061	chr7:104410190-104410191	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs546650276	chr7:104410225-104410226	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
50	rs559990686	chr7:104410229-104410230	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Breast cancer	21858162	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Prostate cancer	18632612	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Cancer	19907438	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22522925	CNVD
early-passage human iPS cells	21368824	CNVD
Melanoma	20877625	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21781307	CNVD

Chromatin state (count:299 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104406000-104410400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:104408600-104409400	Enhancers	Brain Angular Gyrus	brain
3	chr7:104408600-104409400	Enhancers	Brain Cingulate Gyrus	brain
4	chr7:104408600-104409600	Enhancers	Brain Anterior Caudate	brain
5	chr7:104408600-104411800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:104408800-104409400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:104408800-104409400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr7:104408800-104409800	Enhancers	Brain Hippocampus Middle	brain
9	chr7:104409200-104412400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:104409200-104412800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:104409400-104414200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:104409600-104412800	Weak transcription	Brain Anterior Caudate	brain
13	chr7:104409800-104413000	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:104410400-104411800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:104411000-104411200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:104411200-104411400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:104411200-104411400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr7:104411200-104411400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:104411200-104412800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:104411200-104413000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr7:104411400-104412600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:104411400-104412800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:104411400-104414400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr7:104411600-104412800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:104411800-104412800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:104411800-104412800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:104412400-104414000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:104412600-104413200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:104412600-104413600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr7:104412600-104413800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr7:104412600-104414200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr7:104412600-104414400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:104412600-104414600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr7:104412800-104413000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr7:104412800-104413000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:104412800-104413000	Active TSS	Brain Anterior Caudate	brain
37	chr7:104412800-104413200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:104412800-104413400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:104412800-104413800	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr7:104412800-104413800	Enhancers	Spleen	Spleen
41	chr7:104412800-104414200	Enhancers	Fetal Brain Female	brain
42	chr7:104412800-104414400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr7:104412800-104414800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:104412800-104415800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr7:104413000-104413200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:104413000-104413200	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr7:104413000-104413400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr7:104413000-104413400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr7:104413000-104413400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr7:104413000-104414200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links