Variant report
Variant | nsv1029910 |
---|---|
Chromosome Location | chr8:43057794-43824036 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:5480)
- CpG islands (count:4154)
- Chromatin interactive region (count:367)
- LncRNA region (count:22)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ATF1 | chr8:43819080-43819187 | K562 | blood: | n/a | n/a |
2 | ATF1 | chr8:43785555-43785668 | K562 | blood: | n/a | n/a |
3 | ATF1 | chr8:43786577-43787136 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr8:43094373-43097182 | K562 | blood: | n/a | n/a |
5 | ATF1 | chr8:43092711-43094031 | K562 | blood: | n/a | n/a |
6 | ATF1 | chr8:43792645-43793396 | K562 | blood: | n/a | n/a |
7 | ATF2 | chr8:43108749-43109645 | GM12878 | blood: | n/a | n/a |
8 | ATF2 | chr8:43108629-43109665 | GM12878 | blood: | n/a | n/a |
9 | ATF3 | chr8:43147119-43147233 | K562 | blood: | n/a | n/a |
10 | ATF3 | chr8:43093031-43093316 | GM12878 | blood: | n/a | n/a |
11 | ATF3 | chr8:43135865-43136266 | HepG2 | liver: | n/a | n/a |
12 | ATF3 | chr8:43136037-43136199 | HepG2 | liver: | n/a | n/a |
13 | ATF3 | chr8:43136024-43136278 | K562 | blood: | n/a | n/a |
14 | ATF3 | chr8:43092762-43093021 | GM12878 | blood: | n/a | n/a |
15 | ATF3 | chr8:43092744-43093362 | H1-hESC | embryonic stem cell: | n/a | n/a |
16 | ATF3 | chr8:43135995-43136320 | GM12878 | blood: | n/a | n/a |
17 | BACH1 | chr8:43779446-43779599 | K562 | blood: | n/a | n/a |
18 | BACH1 | chr8:43572418-43572443 | K562 | blood: | n/a | n/a |
19 | BACH1 | chr8:43818947-43819136 | K562 | blood: | n/a | n/a |
20 | BACH1 | chr8:43790059-43790248 | K562 | blood: | n/a | n/a |
21 | BACH1 | chr8:43654724-43654750 | K562 | blood: | n/a | n/a |
22 | BACH1 | chr8:43820379-43820751 | K562 | blood: | n/a | n/a |
23 | BACH1 | chr8:43092590-43097183 | K562 | blood: | n/a | n/a |
24 | BACH1 | chr8:43717526-43717725 | K562 | blood: | n/a | n/a |
25 | BATF | chr8:43798483-43799179 | GM12878 | blood: | n/a | n/a |
26 | BATF | chr8:43805930-43806139 | GM12878 | blood: | n/a | n/a |
27 | BATF | chr8:43761208-43761764 | GM12878 | blood: | n/a | n/a |
28 | BATF | chr8:43818959-43819224 | GM12878 | blood: | n/a | n/a |
29 | BATF | chr8:43783610-43783797 | GM12878 | blood: | n/a | n/a |
30 | BATF | chr8:43781687-43781911 | GM12878 | blood: | n/a | n/a |
31 | BATF | chr8:43764727-43764995 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr8:43796300-43796503 | GM12878 | blood: | n/a | n/a |
33 | BATF | chr8:43760280-43760716 | GM12878 | blood: | n/a | n/a |
34 | BATF | chr8:43808539-43808737 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr8:43795406-43795581 | GM12878 | blood: | n/a | n/a |
36 | BATF | chr8:43809217-43809758 | GM12878 | blood: | n/a | n/a |
37 | BATF | chr8:43801979-43802190 | GM12878 | blood: | n/a | n/a |
38 | BATF | chr8:43790975-43791219 | GM12878 | blood: | n/a | n/a |
39 | BATF | chr8:43109976-43110180 | GM12878 | blood: | n/a | n/a |
40 | BATF | chr8:43805912-43806229 | GM12878 | blood: | n/a | n/a |
41 | BATF | chr8:43796330-43796659 | GM12878 | blood: | n/a | n/a |
42 | BATF | chr8:43808822-43809213 | GM12878 | blood: | n/a | n/a |
43 | BATF | chr8:43797348-43797784 | GM12878 | blood: | n/a | n/a |
44 | BATF | chr8:43109104-43109534 | GM12878 | blood: | n/a | chr8:43109272-43109283 |
45 | BATF | chr8:43802968-43803393 | GM12878 | blood: | n/a | n/a |
46 | BATF | chr8:43813396-43813769 | GM12878 | blood: | n/a | n/a |
47 | BATF | chr8:43820362-43821200 | GM12878 | blood: | n/a | n/a |
48 | BATF | chr8:43806260-43806536 | GM12878 | blood: | n/a | n/a |
49 | BATF | chr8:43809305-43809681 | GM12878 | blood: | n/a | n/a |
50 | BATF | chr8:43810032-43810203 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:43402930-43402980 | ovcar-3 | ovarian: | n/a |
2 | chr8:43124515-43124565 | AG09309 | skin: | n/a |
3 | chr8:43101900-43101950 | ProgFib | skin: | n/a |
4 | chr8:43132256-43132306 | NT2-D1 | testis: | n/a |
5 | chr8:43102008-43102058 | HL-60 | blood: | n/a |
6 | chr8:43275453-43275503 | SK-N-MC | brain: | n/a |
7 | chr8:43402930-43402980 | ovcar-3 | ovarian: | n/a |
8 | chr8:43124515-43124565 | AG09309 | skin: | n/a |
9 | chr8:43101900-43101950 | ProgFib | skin: | n/a |
10 | chr8:43132256-43132306 | NT2-D1 | testis: | n/a |
11 | chr8:43102008-43102058 | HL-60 | blood: | n/a |
12 | chr8:43275453-43275503 | SK-N-MC | brain: | n/a |
13 | chr8:43132451-43132501 | HCPEpiC | choroid plexus: | n/a |
14 | chr8:43059756-43059806 | LNCaP | prostate: | n/a |
15 | chr8:43147397-43147447 | HRPEpiC | eye: | n/a |
16 | chr8:43147564-43147614 | NH-A | brain: | n/a |
17 | chr8:43147554-43147604 | H1-hESC | embryonic stem cell: | embryo |
18 | chr8:43060278-43060328 | HCT-116 | colon: | n/a |
19 | chr8:43131431-43131481 | U87 | brain: | n/a |
20 | chr8:43213875-43213925 | SKMC | muscle: | n/a |
21 | chr8:43101403-43101453 | HUVEC | blood vessel: | n/a |
22 | chr8:43418406-43418456 | ProgFib | skin: | n/a |
23 | chr8:43136162-43136212 | A549 | lung: | n/a |
24 | chr8:43147581-43147631 | HEK293 | kidney: | embryo |
25 | chr8:43417050-43417100 | Jurkat | blood: | n/a |
26 | chr8:43059519-43059569 | GM06990 | blood: | n/a |
27 | chr8:43147439-43147489 | GM12892 | blood: | n/a |
28 | chr8:43404214-43404264 | Hepatocyte | liver: | n/a |
29 | chr8:43417050-43417100 | PrEC | prostate: | n/a |
30 | chr8:43417050-43417100 | IMR90 | lung: | fetal |
31 | chr8:43132451-43132501 | SKMC | muscle: | n/a |
32 | chr8:43157775-43157825 | HRPEpiC | eye: | n/a |
33 | chr8:43794595-43794645 | Jurkat | blood: | n/a |
34 | chr8:43102605-43102655 | PANC-1 | pancreas: | n/a |
35 | chr8:43406411-43406461 | Caco-2 | colon: | n/a |
36 | chr8:43059519-43059569 | BJ | skin: | n/a |
37 | chr8:43102008-43102058 | PANC-1 | pancreas: | n/a |
38 | chr8:43136445-43136495 | HMEC | breast: | n/a |
39 | chr8:43061532-43061582 | H1-hESC | embryonic stem cell: | embryo |
40 | chr8:43405739-43405789 | H1-hESC | embryonic stem cell: | embryo |
41 | chr8:43132507-43132557 | T-47D | breast: | n/a |
42 | chr8:43136445-43136495 | A549 | lung: | n/a |
43 | chr8:43060278-43060328 | HEEpiC | esophagus: | n/a |
44 | chr8:43136445-43136495 | HEEpiC | esophagus: | n/a |
45 | chr8:43060278-43060328 | AG04449 | skin: | fetal |
46 | chr8:43101900-43101950 | HRE | kidney: | n/a |
47 | chr8:43136327-43136377 | HCPEpiC | choroid plexus: | n/a |
48 | chr8:43401874-43401924 | HMEC | breast: | n/a |
49 | chr8:43136327-43136377 | HUVEC | blood vessel: | n/a |
50 | chr8:43131535-43131585 | HRCEpiC | kidney: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:123166252..123169232-chr8:43093408..43096526,3 | K562 | blood: | |
2 | chr12:100708541..100710061-chr8:43093202..43095465,2 | MCF-7 | breast: | |
3 | chr2:178637693..178638193-chr8:43096253..43096754,2 | MCF-7 | breast: | |
4 | chr13:40006578..40007559-chr8:43092929..43093431,2 | MCF-7 | breast: | |
5 | chr15:56952424..56953252-chr8:43092410..43092931,2 | MCF-7 | breast: | |
6 | chr8:43092430..43092931-chrX:25127045..25127545,2 | MCF-7 | breast: | |
7 | chr10:29692523..29694023-chr8:43093730..43096075,4 | K562 | blood: | |
8 | chr13:36123141..36123661-chr8:43092410..43092930,2 | MCF-7 | breast: | |
9 | chr8:43091431..43093289-chr9:85469654..85471154,2 | MCF-7 | breast: | |
10 | chr4:53214789..53215289-chr8:43094562..43095232,2 | MCF-7 | breast: | |
11 | chr8:43095226..43096912-chrX:124180022..124181542,2 | MCF-7 | breast: | |
12 | chr4:120183641..120184141-chr8:43096068..43096724,2 | MCF-7 | breast: | |
13 | chr5:170522286..170522807-chr8:43092410..43092910,2 | MCF-7 | breast: | |
14 | chr17:59827450..59828180-chr8:43092410..43092930,2 | MCF-7 | breast: | |
15 | chr11:123166232..123167752-chr8:43091411..43092930,2 | MCF-7 | breast: | |
16 | chr17:79884582..79885478-chr8:43096392..43097259,2 | Hela-S3 | cervix: | |
17 | chr2:109955404..109955904-chr8:43092929..43093789,2 | MCF-7 | breast: | |
18 | chr11:115753180..115754160-chr8:43096224..43097245,3 | MCF-7 | breast: | |
19 | chr5:25238045..25239045-chr8:43096224..43097412,5 | MCF-7 | breast: | |
20 | chr3:189296244..189297090-chr8:43095093..43095730,2 | MCF-7 | breast: | |
21 | chr11:25258490..25261471-chr8:43091396..43094700,3 | MCF-7 | breast: | |
22 | chr11:115752160..115753660-chr8:43091429..43092930,2 | K562 | blood: | |
23 | chr8:43092428..43092930-chr8:60597476..60597977,2 | MCF-7 | breast: | |
24 | chr2:109955404..109956904-chr8:43092930..43094789,2 | MCF-7 | breast: | |
25 | chr8:43094503..43095042-chrX:13246474..13246974,2 | MCF-7 | breast: | |
26 | chr11:134217415..134218395-chr8:43092929..43093481,2 | MCF-7 | breast: | |
27 | chr1:149857709..149858433-chr8:43092428..43093289,2 | MCF-7 | breast: | |
28 | chr13:36123141..36123661-chr8:43092408..43092930,2 | MCF-7 | breast: | |
29 | chr18:3904354..3904854-chr8:43092428..43092930,2 | MCF-7 | breast: | |
30 | chr11:123166252..123169232-chr8:43093503..43097413,5 | K562 | blood: | |
31 | chr13:36123141..36124141-chr8:43092410..43093431,4 | MCF-7 | breast: | |
32 | chr8:43095234..43095797-chr9:12480274..12480774,2 | MCF-7 | breast: | |
33 | chr4:101370568..101371068-chr8:43096224..43096730,2 | MCF-7 | breast: | |
34 | chr3:74707451..74708953-chr8:43094695..43096593,2 | MCF-7 | breast: | |
35 | chr1:188145534..188146514-chr8:43094651..43095896,3 | MCF-7 | breast: | |
36 | chr12:60437721..60438429-chr8:43096750..43097250,2 | MCF-7 | breast: | |
37 | chr12:77729288..77730268-chr8:43094498..43095218,2 | MCF-7 | breast: | |
38 | chr3:74708453..74709431-chr8:43094542..43095524,2 | MCF-7 | breast: | |
39 | chr1:188144535..188147516-chr8:43091410..43094431,3 | K562 | blood: | |
40 | chr6:19042067..19042568-chr8:43094198..43094702,2 | MCF-7 | breast: | |
41 | chr1:105685482..105686002-chr8:43092410..43092930,2 | MCF-7 | breast: | |
42 | chr4:129728325..129729008-chr8:43092928..43093431,2 | MCF-7 | breast: | |
43 | chr8:42948202..42949138-chr8:43130975..43131934,4 | K562 | blood: | |
44 | chr20:52195113..52195833-chr8:43092929..43093765,2 | MCF-7 | breast: | |
45 | chr4:41347457..41350457-chr8:43093153..43096753,6 | MCF-7 | breast: | |
46 | chr6:143208324..143209824-chr8:43091411..43093269,2 | MCF-7 | breast: | |
47 | chr8:43092429..43093269-chr8:43823893..43824414,2 | MCF-7 | breast: | |
48 | chr1:105859080..105859580-chr8:43092430..43093289,2 | MCF-7 | breast: | |
49 | chr7:133497538..133498465-chr8:43092409..43092910,2 | MCF-7 | breast: | |
50 | chr4:120183141..120184141-chr8:43096226..43096751,3 | MCF-7 | breast: |
(count:22 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RNF170-5 | chr8:43094654-43095063 | NONHSAT126340 |
2 | lnc-HGSNAT-7 | chr8:43307943-43308055 | NONHSAT126356 |
3 | lnc-HGSNAT-7 | chr8:43299491-43299558 | NONHSAT126356 |
4 | lnc-HGSNAT-7 | chr8:43306599-43306780 | NONHSAT126356 |
5 | lnc-HGSNAT-7 | chr8:43303948-43304047 | NONHSAT126356 |
6 | lnc-RNF170-8 | chr8:43366963-43367176 | NONHSAT126358 |
7 | lnc-HGSNAT-4 | chr8:43169091-43169343 | NONHSAT126351 |
8 | lnc-HGSNAT-2 | chr8:43109018-43109232 | NONHSAT126346 |
9 | lnc-RNF170-1 | chr8:43097496-43097508 | XLOC_007077 |
10 | lnc-HGSNAT-10 | chr8:43394280-43394615 | NONHSAT126362 |
11 | lnc-RNF170-1 | chr8:43096867-43097076 | XLOC_007077 |
12 | lnc-HGSNAT-2 | chr8:43108875-43108959 | NONHSAT126346 |
13 | lnc-RNF170-1 | chr8:43097495-43097508 | NONHSAT126341 |
14 | lnc-HGSNAT-9 | chr8:43368786-43369564 | NONHSAT126361 |
15 | lnc-HGSNAT-7 | chr8:43298045-43298224 | NONHSAT126356 |
16 | lnc-RNF170-9 | chr8:43529413-43529734 | NONHSAT126368 |
17 | lnc-HGSNAT-6 | chr8:43236787-43237091 | NONHSAT126355 |
18 | lnc-RNF170-1 | chr8:43096866-43097076 | NONHSAT126341 |
19 | lnc-HGSNAT-5 | chr8:43233441-43233652 | NONHSAT126354 |
20 | lnc-HGSNAT-12 | chr8:43527966-43528218 | NONHSAT126367 |
21 | lnc-HGSNAT-8 | chr8:43349080-43349905 | NONHSAT126357 |
22 | lnc-RNF170-5 | chr8:43095855-43096073 | NONHSAT126340 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000253195 | TF binding region |
ENSG00000254145 | TF binding region |
ENSG00000250637 | TF binding region |
ENSG00000255166 | TF binding region |
ENSG00000201329 | TF binding region |
AFG3L2P1 | TF binding region |
ENSG00000253884 | TF binding region |
ENSG00000253186 | TF binding region |
ENSG00000254342 | TF binding region |
RN7SKP41 | TF binding region |
ENSG00000253486 | TF binding region |
ENSG00000253707 | TF binding region |
ENSG00000264094 | TF binding region |
ENSG00000253312 | TF binding region |
ENSG00000234713 | TF binding region |
CYP4F44P | TF binding region |
VN1R46P | TF binding region |
ENSG00000221295 | TF binding region |
ENSG00000253845 | TF binding region |
ENSG00000255497 | TF binding region |
ENSG00000253198 | TF binding region |
POTEA | TF binding region |
ENSG00000253319 | TF binding region |
RNU6-104P | TF binding region |
SNX18P27 | TF binding region |
ENSG00000254069 | TF binding region |
ENSG00000253195 | CpG island |
ENSG00000254145 | CpG island |
ENSG00000250637 | CpG island |
ENSG00000255166 | CpG island |
ENSG00000201329 | CpG island |
AFG3L2P1 | CpG island |
ENSG00000253884 | CpG island |
ENSG00000253186 | CpG island |
ENSG00000254342 | CpG island |
RN7SKP41 | CpG island |
ENSG00000253486 | CpG island |
ENSG00000253707 | CpG island |
ENSG00000264094 | CpG island |
ENSG00000253312 | CpG island |
ENSG00000234713 | CpG island |
CYP4F44P | CpG island |
VN1R46P | CpG island |
ENSG00000221295 | CpG island |
ENSG00000253845 | CpG island |
ENSG00000255497 | CpG island |
ENSG00000253198 | CpG island |
POTEA | CpG island |
ENSG00000253319 | CpG island |
RNU6-104P | CpG island |
SNX18P27 | CpG island |
ENSG00000254069 | CpG island |
ENSG00000185900 | chromatin interactions |
ENSG00000184678 | chromatin interactions |
ENSG00000197324 | chromatin interactions |
ENSG00000136021 | chromatin interactions |
ENSG00000147526 | chromatin interactions |
ENSG00000187013 | chromatin interactions |
ENSG00000121068 | chromatin interactions |
ENSG00000116774 | chromatin interactions |
ENSG00000136492 | chromatin interactions |
ENSG00000087191 | chromatin interactions |
ENSG00000167700 | chromatin interactions |
ENSG00000146192 | chromatin interactions |
ENSG00000163636 | chromatin interactions |
ENSG00000167513 | chromatin interactions |
ENSG00000131051 | chromatin interactions |
ENSG00000124171 | chromatin interactions |
ENSG00000222894 | chromatin interactions |
ENSG00000165102 | chromatin interactions |
ENSG00000169189 | chromatin interactions |
ENSG00000204569 | chromatin interactions |
ENSG00000245888 | chromatin interactions |
ENSG00000159063 | chromatin interactions |
ENSG00000111371 | chromatin interactions |
ENSG00000145390 | chromatin interactions |
ENSG00000253486 | chromatin interactions |
ENSG00000238509 | chromatin interactions |
ENSG00000108654 | chromatin interactions |
ENSG00000108592 | chromatin interactions |
ENSG00000177731 | chromatin interactions |
ENSG00000230992 | chromatin interactions |
ENSG00000253748 | chromatin interactions |
ENSG00000253195 | chromatin interactions |
ENSG00000163466 | chromatin interactions |
ENSG00000267280 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs531967582 | chr8:43057798-43057799 | Strong transcription Weak transcription Genic enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs138613130 | chr8:43057888-43057889 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs576281567 | chr8:43057910-43057911 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs141634395 | chr8:43057925-43057926 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs555739014 | chr8:43057931-43057932 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs534903344 | chr8:43057980-43057981 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs187143372 | chr8:43058001-43058002 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs568261544 | chr8:43058008-43058009 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs78139290 | chr8:43058031-43058032 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs192217082 | chr8:43058041-43058042 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs576501457 | chr8:43058064-43058065 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs184540292 | chr8:43058072-43058073 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs538619546 | chr8:43058080-43058081 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs370085400 | chr8:43058133-43058134 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs190227844 | chr8:43058165-43058166 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs572325840 | chr8:43058173-43058174 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs541323081 | chr8:43058248-43058249 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs541557042 | chr8:43058301-43058302 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs13253966 | chr8:43058385-43058386 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
20 | rs574650304 | chr8:43058433-43058434 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs371176935 | chr8:43058469-43058470 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs563018526 | chr8:43058486-43058487 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs193256729 | chr8:43058518-43058519 | Strong transcription Weak transcription Genic enhancers Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs146199503 | chr8:43058604-43058605 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs369589489 | chr8:43058609-43058610 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs185114255 | chr8:43058684-43058685 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs528124924 | chr8:43058726-43058727 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs189045167 | chr8:43058742-43058743 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs568375415 | chr8:43058744-43058745 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs201870703 | chr8:43058775-43058776 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs72582269 | chr8:43058778-43058779 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs35974518 | chr8:43058779-43058780 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs150470689 | chr8:43058780-43058781 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs199961505 | chr8:43058782-43058783 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs370420612 | chr8:43058783-43058784 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs200776379 | chr8:43058786-43058787 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs201916836 | chr8:43058788-43058789 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs71999969 | chr8:43058795-43058796 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs55994876 | chr8:43058796-43058797 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs533340376 | chr8:43058806-43058807 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs139209518 | chr8:43058807-43058808 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs532030724 | chr8:43058872-43058873 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs570587974 | chr8:43058876-43058877 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs181713922 | chr8:43058902-43058903 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs563868913 | chr8:43059051-43059052 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs558829336 | chr8:43059055-43059056 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs529600901 | chr8:43059082-43059083 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs572395493 | chr8:43059128-43059129 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs534705444 | chr8:43059150-43059151 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs554795094 | chr8:43059180-43059181 | Genic enhancers Weak transcription Strong transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Prostate cancer | 16573809 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Breast cancer | 20837533 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Cancer | 22429812 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Breast cancer | 21264507 | CNVD |
Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Oral cancer | 21386901 | CNVD |
Prostate cancer | 21088497 | CNVD |
Prostate cancer | 21965145 | CNVD |
Breast cancer | 20940404 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Embryonal rhabdomyosarcoma | 16790082 | CNVD |
Gastric cancer | 17167181 | CNVD |
Prostate cancer | 16705090 | CNVD |
8p-syndrome | 17576883 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Medulloblastoma | 16968546 | CNVD |
Lung adenocarcinoma | 19525976 | CNVD |
Lung cancer | 19525976 | CNVD |
Prostate cancer | 17245344 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Cancer | 16751803 | CNVD |
Wilms tumour | 21544195 | CNVD |
Gastric cancer | 17908304 | CNVD |
Melanoma | 18172304 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Autism | 19415332 | CNVD |
Malaria | 21533027 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Breast cancer | 21245420 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Liver carcinoma | 19366792 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Seminomas | 18059402 | CNVD |
Myxofibrosarcoma | 16751306 | CNVD |
Immune disease | 21572526 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Kallmann Syndrome 2 | 22470819 | CNVD |
Autism | 22495311 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Lung cancer | 18438408 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Pancreatic cancer | 21811587 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Developmental delay | 21373258 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 17603634 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Testicular cancer | 18059402 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Bladder cancer | 19088036 | CNVD |
Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
Breast cancer | 17001308 | CNVD |
Breast cancer | 17157792 | CNVD |
Cancer | 17001308 | CNVD |
Cancer | 18840272 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Chordoma | 18071362 | CNVD |
Salivary gland tumor | 18059337 | CNVD |
Breast cancer | 17133270 | CNVD |
Breast cancer | 16608533 | CNVD |
Breast cancer | 21509527 | CNVD |
Breast cancer | 21785460 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Breast cancer | 21858162 | CNVD |
Chronic lymphocytic leukemia | 18922857 | CNVD |
Medulloblastoma | 19270706 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Breast cancer | 21045282 | CNVD |
Lung cancer | 17925434 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Cancer | 20164919 | CNVD |
primary effusion lymphomas | 17116491 | CNVD |
Esophageal cancer | 20955586 | CNVD |
abnormal development | 18461090 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Cancer | 20164920 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Mental retardation | 17124404 | CNVD |
Schizophrenia | 23813976 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Medulloblastoma | 20607354 | CNVD |
Breast cancer | 21364760 | CNVD |
Non-syndromic sensorineural hearing loss | 19587683 | CNVD |
Schizophrenia | 20967226 | CNVD |
Bipolar disorder | 19214233 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:43026400-43058800 | Weak transcription | Small Intestine | intestine |
2 | chr8:43030400-43059200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
3 | chr8:43042800-43058200 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
4 | chr8:43043200-43057800 | Strong transcription | Primary monocytes fromperipheralblood | blood |
5 | chr8:43043200-43058200 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
6 | chr8:43043600-43057800 | Strong transcription | Duodenum Mucosa | Duodenum |
7 | chr8:43043600-43058200 | Strong transcription | Primary neutrophils fromperipheralblood | blood |
8 | chr8:43044200-43058200 | Strong transcription | Sigmoid Colon | Sigmoid Colon |
9 | chr8:43044400-43059400 | Strong transcription | Monocytes-CD14+_RO01746 | blood |
10 | chr8:43044400-43059600 | Strong transcription | Fetal Brain Female | brain |
11 | chr8:43044800-43057800 | Strong transcription | Placenta | Placenta |
12 | chr8:43045600-43057800 | Strong transcription | Brain Germinal Matrix | brain |
13 | chr8:43046000-43058200 | Strong transcription | Brain Anterior Caudate | brain |
14 | chr8:43046800-43057800 | Strong transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
15 | chr8:43046800-43058000 | Weak transcription | Right Atrium | heart |
16 | chr8:43046800-43061000 | Weak transcription | Stomach Mucosa | stomach |
17 | chr8:43047000-43057800 | Strong transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
18 | chr8:43047000-43057800 | Strong transcription | Duodenum Smooth Muscle | Duodenum |
19 | chr8:43047000-43057800 | Strong transcription | Fetal Muscle Leg | muscle |
20 | chr8:43047000-43058200 | Strong transcription | Stomach Smooth Muscle | stomach |
21 | chr8:43047200-43058400 | Strong transcription | Fetal Stomach | stomach |
22 | chr8:43050200-43061200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
23 | chr8:43051000-43059600 | Strong transcription | Breast Myoepithelial Primary Cells | Breast |
24 | chr8:43051000-43059800 | Strong transcription | Aorta | Aorta |
25 | chr8:43051800-43058200 | Strong transcription | Fetal Muscle Trunk | muscle |
26 | chr8:43053400-43057800 | Weak transcription | HUVEC | blood vessel |
27 | chr8:43053400-43058400 | Weak transcription | HepG2 | liver |
28 | chr8:43053800-43058600 | Weak transcription | Psoas Muscle | Psoas |
29 | chr8:43054200-43058600 | Genic enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
30 | chr8:43055000-43058400 | Weak transcription | GM12878-XiMat | blood |
31 | chr8:43055000-43060800 | Weak transcription | Fetal Kidney | kidney |
32 | chr8:43055000-43064400 | Weak transcription | HMEC | breast |
33 | chr8:43055200-43058200 | Strong transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
34 | chr8:43055400-43057800 | Strong transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
35 | chr8:43055400-43058600 | Strong transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
36 | chr8:43055400-43064200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
37 | chr8:43055600-43058000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
38 | chr8:43055800-43057800 | Strong transcription | HSMM | muscle |
39 | chr8:43056000-43058800 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
40 | chr8:43056000-43059000 | Weak transcription | A549 | lung |
41 | chr8:43056400-43058000 | Weak transcription | NHDF-Ad | bronchial |
42 | chr8:43056400-43058800 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
43 | chr8:43056400-43058800 | Weak transcription | Dnd41 | blood |
44 | chr8:43056400-43060800 | Weak transcription | Fetal Heart | heart |
45 | chr8:43056400-43060800 | Weak transcription | Rectal Smooth Muscle | rectum |
46 | chr8:43056600-43058400 | Weak transcription | Primary B cells from cord blood | blood |
47 | chr8:43056600-43059000 | Weak transcription | Colon Smooth Muscle | Colon |
48 | chr8:43056600-43059000 | Weak transcription | HSMMtube | muscle |
49 | chr8:43056600-43060800 | Weak transcription | Fetal Brain Male | brain |
50 | chr8:43056600-43063400 | Weak transcription | NHEK | skin |