Variant report

Variant	nsv1032826
Chromosome Location	chr6:101091434-101147095
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:36)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:36 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:100933157..100934125-chr6:101104912..101105845,2	MCF-7	breast:
2	chr6:100555103..100555824-chr6:101111851..101112620,3	MCF-7	breast:
3	chr6:100927185..100927844-chr6:101105325..101105870,2	MCF-7	breast:
4	chr6:101123862..101126267-chr6:101132298..101133807,2	K562	blood:
5	chr6:101115915..101118042-chr6:101119236..101121242,2	MCF-7	breast:
6	chr6:101140450..101143009-chr6:101144554..101147348,2	MCF-7	breast:
7	chr6:101137250..101140625-chr6:101142166..101144758,3	K562	blood:
8	chr6:101090896..101093112-chr6:101096818..101099684,2	K562	blood:
9	chr6:101073440..101076010-chr6:101092946..101094506,2	K562	blood:
10	chr6:101123862..101126267-chr6:101132298..101133807,2	K562	blood:
11	chr6:101103606..101105187-chr6:101110691..101113240,2	K562	blood:
12	chr6:101120240..101121939-chr6:101124928..101126557,2	K562	blood:
13	chr6:101103606..101105187-chr6:101110691..101113240,2	K562	blood:
14	chr6:101134397..101137375-chr6:101141087..101145140,3	K562	blood:
15	chr6:101139725..101141428-chr6:101141736..101143273,2	K562	blood:
16	chr6:101120240..101121939-chr6:101124928..101126557,2	K562	blood:
17	chr6:101144625..101146533-chr6:101150207..101152551,2	K562	blood:
18	chr6:101134397..101137375-chr6:101141087..101145140,3	K562	blood:
19	chr6:101139725..101141428-chr6:101141736..101143273,2	K562	blood:
20	chr6:101137250..101140625-chr6:101142166..101144758,3	K562	blood:
21	chr6:100564262..100565210-chr6:101105116..101106264,3	K562	blood:
22	chr6:100315644..100316614-chr6:101111864..101112500,2	K562	blood:
23	chr6:100564279..100564893-chr6:101111911..101112519,2	MCF-7	breast:
24	chr6:100554526..100556212-chr6:101104828..101106229,8	MCF-7	breast:
25	chr6:100315907..100316622-chr6:101105335..101106035,2	K562	blood:
26	chr6:101141922..101144028-chr6:101167838..101169583,2	MCF-7	breast:
27	chr6:100774579..100775648-chr6:101105264..101106241,7	MCF-7	breast:
28	chr6:100774621..100775576-chr6:101105387..101106278,3	MCF-7	breast:
29	chr6:100559670..100561904-chr6:101108976..101110745,2	MCF-7	breast:
30	chr6:101134397..101136126-chr6:101142181..101145050,2	K562	blood:
31	chr6:101140450..101143009-chr6:101144554..101147348,2	MCF-7	breast:
32	chr6:100564237..100565179-chr6:101105285..101106695,9	MCF-7	breast:
33	chr6:101090896..101093112-chr6:101096818..101099684,2	K562	blood:
34	chr6:101134397..101136126-chr6:101142181..101145050,2	K562	blood:
35	chr6:101115915..101118042-chr6:101119236..101121242,2	MCF-7	breast:
36	chr6:100564241..100565258-chr6:101104940..101106162,4	MCF-7	breast:

No data

Extended variants
information (count: 1907 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:1907 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1392969	chr6:101091434-101091435	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs62422695	chr6:101091449-101091450	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs144737521	chr6:101091455-101091456	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs531256323	chr6:101091544-101091545	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs549363683	chr6:101091550-101091551	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs375276071	chr6:101091629-101091630	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs567854858	chr6:101091637-101091638	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs534877726	chr6:101091744-101091745	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs536565167	chr6:101091745-101091746	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs188419503	chr6:101091749-101091750	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs571394188	chr6:101091768-101091769	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs538714910	chr6:101091780-101091781	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs557349542	chr6:101091798-101091799	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs575504320	chr6:101091836-101091837	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs570736803	chr6:101091854-101091855	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs36066132	chr6:101091861-101091862	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs114507898	chr6:101091880-101091881	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs559389008	chr6:101091898-101091899	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs200839694	chr6:101091909-101091910	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs555364171	chr6:101091953-101091954	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs371907150	chr6:101091993-101091994	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs375536812	chr6:101091997-101091998	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs376558607	chr6:101092010-101092011	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs573827364	chr6:101092023-101092024	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs369709435	chr6:101092043-101092044	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs541204859	chr6:101092058-101092059	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs370329352	chr6:101092152-101092153	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs553136605	chr6:101092187-101092188	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs535833749	chr6:101092222-101092223	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs555437427	chr6:101092223-101092224	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs577827094	chr6:101092255-101092256	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs148446214	chr6:101092260-101092261	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs239243	chr6:101092265-101092266	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs530383004	chr6:101092275-101092276	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs543884611	chr6:101092302-101092303	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs192291624	chr6:101092306-101092307	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs561403546	chr6:101092307-101092308	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs566095103	chr6:101092335-101092336	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs528698743	chr6:101092379-101092380	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs182298498	chr6:101092388-101092389	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs141745931	chr6:101092389-101092390	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs187720527	chr6:101092434-101092435	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs550758696	chr6:101092458-101092459	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs569275757	chr6:101092483-101092484	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs62422696	chr6:101092493-101092494	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs577709152	chr6:101092502-101092503	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs537098277	chr6:101092509-101092510	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs557538279	chr6:101092541-101092542	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs574116037	chr6:101092590-101092591	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs79114592	chr6:101092606-101092607	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
small cell lung cancer	20016488	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17170743	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21785460	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Myelofibrosis	22110671	CNVD
Obesity	21045960	CNVD
Liver carcinoma	19366792	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:655 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101025800-101099800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:101032400-101102000	Weak transcription	Thymus	Thymus
3	chr6:101032400-101104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:101032600-101102000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:101034400-101092400	Weak transcription	Pancreas	Pancrea
7	chr6:101037400-101110600	Weak transcription	K562	blood
8	chr6:101037800-101107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:101062600-101101600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:101062800-101094200	Weak transcription	Fetal Stomach	stomach
11	chr6:101062800-101097000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:101063800-101102600	Weak transcription	Small Intestine	intestine
13	chr6:101065400-101092400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:101067600-101102200	Weak transcription	Right Ventricle	heart
15	chr6:101068400-101106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:101068800-101093200	Weak transcription	Esophagus	oesophagus
17	chr6:101070200-101094200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:101070400-101092400	Weak transcription	Fetal Intestine Small	intestine
19	chr6:101070400-101092600	Weak transcription	Lung	lung
20	chr6:101070400-101094600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:101070400-101096200	Weak transcription	Spleen	Spleen
22	chr6:101070400-101100000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:101071600-101094400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:101071600-101104600	Weak transcription	Brain Angular Gyrus	brain
25	chr6:101071600-101127800	Weak transcription	Hela-S3	cervix
26	chr6:101071800-101099200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:101075600-101100000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr6:101076400-101107200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:101076400-101110400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:101076600-101092400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:101076600-101094400	Weak transcription	Aorta	Aorta
32	chr6:101077200-101092400	Weak transcription	HUVEC	blood vessel
33	chr6:101081200-101106000	Weak transcription	Fetal Brain Male	brain
34	chr6:101081400-101099200	Weak transcription	NHEK	skin
35	chr6:101081400-101100000	Weak transcription	HepG2	liver
36	chr6:101081600-101110800	Weak transcription	HSMMtube	muscle
37	chr6:101081800-101102600	Weak transcription	A549	lung
38	chr6:101082000-101102400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:101082200-101096000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:101082400-101096000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:101083200-101095200	Strong transcription	HSMM	muscle
42	chr6:101083200-101096000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:101083200-101097200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:101083400-101095600	Strong transcription	Liver	Liver
45	chr6:101083800-101101000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr6:101084800-101099200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:101085000-101096000	Weak transcription	Brain Germinal Matrix	brain
48	chr6:101085400-101092400	Weak transcription	Fetal Intestine Large	intestine
49	chr6:101085400-101101200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:101085400-101102200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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