Variant report

Variant	nsv10351
Chromosome Location	chr3:163842742-163845032
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:87 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574465143	chr3:163842743-163842744	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs545390351	chr3:163842749-163842750	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs565291640	chr3:163842818-163842819	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs527739904	chr3:163842819-163842820	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs7618332	chr3:163842831-163842832	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs184434813	chr3:163842884-163842885	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs530266547	chr3:163842944-163842945	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs372964228	chr3:163843032-163843033	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs55923107	chr3:163843036-163843037	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs150439605	chr3:163843073-163843074	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs189595935	chr3:163843087-163843088	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs565542373	chr3:163843121-163843122	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs534712399	chr3:163843123-163843124	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs7632095	chr3:163843129-163843130	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs574557077	chr3:163843183-163843184	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs543667942	chr3:163843286-163843287	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs35351537	chr3:163843289-163843290	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs11711476	chr3:163843296-163843297	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs34967909	chr3:163843306-163843307	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs546125407	chr3:163843319-163843320	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs180827923	chr3:163843350-163843351	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs74696180	chr3:163843356-163843357	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs77943651	chr3:163843357-163843358	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs78099439	chr3:163843358-163843359	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs533533119	chr3:163843362-163843363	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs11715639	chr3:163843386-163843387	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs553309158	chr3:163843437-163843438	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200798136	chr3:163843514-163843515	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs561253454	chr3:163843522-163843523	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs11719353	chr3:163843523-163843524	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs549929354	chr3:163843524-163843525	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs34670546	chr3:163843525-163843526	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs397876855	chr3:163843533-163843534	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs185660678	chr3:163843572-163843573	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs138221158	chr3:163843586-163843587	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs565660595	chr3:163843587-163843588	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs149604483	chr3:163843588-163843589	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs548242728	chr3:163843590-163843591	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs568032407	chr3:163843624-163843625	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs377288088	chr3:163843674-163843675	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs370011507	chr3:163843681-163843682	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs537157043	chr3:163843751-163843752	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs557148803	chr3:163843812-163843813	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs188371022	chr3:163843826-163843827	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs374162012	chr3:163843838-163843839	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs375169341	chr3:163843856-163843857	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs78142053	chr3:163843904-163843905	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs74730799	chr3:163843962-163843963	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs181580464	chr3:163843976-163843977	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs115265099	chr3:163843993-163843994	Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21364760	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD
Sudden cardiac death	19188705	CNVD
Mantle cell lymphoma	19029149	CNVD
Malformation	19546859	CNVD
Schizophrenia	19546859	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
epilepsy	18472482	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Myxofibrosarcoma	16751306	CNVD
Parkinson disease	21907011	CNVD
Bladder cancer	21909424	CNVD
Glioblastoma multiforme	21138945	CNVD
Cancer	20164919	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:163839200-163852000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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