Variant report

Variant	nsv1037012
Chromosome Location	chr14:106252705-106634178
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5627)
CpG islands
(count:4217)
Chromatin interactive
region (count:104)
LncRNA
region (count:112)
Mature miRNA
region (count: 4)
miRNA target
sites (count:0)

(count:5627 , 50 per page) page: 1 2 3 4 5 6 7 ... 113

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr14:106410876-106411111	HepG2	liver:	n/a	n/a
2	ATF2	chr14:106326435-106327466	GM12878	blood:	n/a	n/a
3	ATF2	chr14:106394149-106394677	GM12878	blood:	n/a	n/a
4	ATF2	chr14:106374323-106374667	GM12878	blood:	n/a	n/a
5	ATF2	chr14:106325826-106330580	GM12878	blood:	n/a	n/a
6	ATF2	chr14:106327604-106330367	GM12878	blood:	n/a	n/a
7	ATF3	chr14:106465911-106466196	GM12878	blood:	n/a	n/a
8	ATF3	chr14:106626869-106627261	GM12878	blood:	n/a	n/a
9	ATF3	chr14:106465443-106465738	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF3	chr14:106626882-106627227	K562	blood:	n/a	n/a
11	ATF3	chr14:106626885-106627176	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF3	chr14:106465370-106465650	GM12878	blood:	n/a	n/a
13	ATF3	chr14:106501544-106501708	K562	blood:	n/a	n/a
14	ATF3	chr14:106598719-106598869	K562	blood:	n/a	n/a
15	ATF3	chr14:106551061-106551349	HCT-116	colon:	n/a	n/a
16	ATF3	chr14:106465697-106466428	GM12878	blood:	n/a	n/a
17	BATF	chr14:106633978-106634238	GM12878	blood:	n/a	n/a
18	BATF	chr14:106573042-106573320	GM12878	blood:	n/a	n/a
19	BATF	chr14:106471101-106471287	GM12878	blood:	n/a	n/a
20	BATF	chr14:106518146-106518487	GM12878	blood:	n/a	n/a
21	BATF	chr14:106328109-106328609	GM12878	blood:	n/a	n/a
22	BATF	chr14:106465626-106466002	GM12878	blood:	n/a	n/a
23	BATF	chr14:106634015-106634268	GM12878	blood:	n/a	n/a
24	BATF	chr14:106327592-106328107	GM12878	blood:	n/a	n/a
25	BATF	chr14:106452569-106452785	GM12878	blood:	n/a	n/a
26	BATF	chr14:106508010-106508313	GM12878	blood:	n/a	n/a
27	BATF	chr14:106626850-106627180	GM12878	blood:	n/a	n/a
28	BATF	chr14:106466168-106467707	GM12878	blood:	n/a	n/a
29	BATF	chr14:106589712-106590117	GM12878	blood:	n/a	n/a
30	BATF	chr14:106589786-106590128	GM12878	blood:	n/a	n/a
31	BATF	chr14:106610157-106610335	GM12878	blood:	n/a	n/a
32	BATF	chr14:106327898-106328592	GM12878	blood:	n/a	n/a
33	BCL11A	chr14:106319034-106319214	GM12878	blood:	n/a	n/a
34	BCL11A	chr14:106322004-106322977	GM12878	blood:	n/a	n/a
35	BCL11A	chr14:106471106-106471315	GM12878	blood:	n/a	n/a
36	BCL11A	chr14:106626878-106627168	GM12878	blood:	n/a	n/a
37	BCL11A	chr14:106318409-106318664	GM12878	blood:	n/a	n/a
38	BCL11A	chr14:106465514-106465722	GM12878	blood:	n/a	n/a
39	BCL11A	chr14:106324185-106324497	GM12878	blood:	n/a	n/a
40	BCL11A	chr14:106324965-106326185	GM12878	blood:	n/a	n/a
41	BCL11A	chr14:106323521-106323980	GM12878	blood:	n/a	n/a
42	BCL11A	chr14:106319294-106320082	GM12878	blood:	n/a	chr14:106319625-106319634
43	BCL11A	chr14:106323173-106323467	GM12878	blood:	n/a	n/a
44	BCL11A	chr14:106452504-106452791	GM12878	blood:	n/a	n/a
45	BCL11A	chr14:106324874-106325180	GM12878	blood:	n/a	n/a
46	BCL11A	chr14:106466544-106467536	GM12878	blood:	n/a	n/a
47	BCL11A	chr14:106319449-106320098	GM12878	blood:	n/a	chr14:106319625-106319634
48	BCL11A	chr14:106328152-106328632	GM12878	blood:	n/a	chr14:106328262-106328271 chr14:106328230-106328239
49	BCL11A	chr14:106325434-106325655	GM12878	blood:	n/a	n/a
50	BCL11A	chr14:106328036-106328667	GM12878	blood:	n/a	chr14:106328262-106328271 chr14:106328230-106328239

(count:4217 , 50 per page) page: 1 2 3 4 5 6 7 ... 85

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:106438519-106438569	HRPEpiC	eye:	n/a
2	chr14:106320202-106320252	SK-N-MC	brain:	n/a
3	chr14:106598071-106598121	U87	brain:	n/a
4	chr14:106438519-106438569	HNPCEpiC	eye:	n/a
5	chr14:106322163-106322213	GM12892	blood:	n/a
6	chr14:106374384-106374434	Hepatocyte	liver:	n/a
7	chr14:106321870-106321920	PANC-1	pancreas:	n/a
8	chr14:106366523-106366573	Hepatocyte	liver:	n/a
9	chr14:106438519-106438569	HRPEpiC	eye:	n/a
10	chr14:106320202-106320252	SK-N-MC	brain:	n/a
11	chr14:106598071-106598121	U87	brain:	n/a
12	chr14:106438519-106438569	HNPCEpiC	eye:	n/a
13	chr14:106322163-106322213	GM12892	blood:	n/a
14	chr14:106374384-106374434	Hepatocyte	liver:	n/a
15	chr14:106321870-106321920	PANC-1	pancreas:	n/a
16	chr14:106366523-106366573	Hepatocyte	liver:	n/a
17	chr14:106322429-106322479	MCF10A-Er-Src	breast:	n/a
18	chr14:106373308-106373358	T-47D	breast:	n/a
19	chr14:106306929-106306979	MCF10A-Er-Src	breast:	n/a
20	chr14:106329607-106329657	SK-N-MC	brain:	n/a
21	chr14:106333603-106333653	LNCaP	prostate:	n/a
22	chr14:106361640-106361690	HUVEC	blood vessel:	n/a
23	chr14:106306929-106306979	HMEC	breast:	n/a
24	chr14:106355821-106355871	GM12891	blood:	n/a
25	chr14:106408714-106408764	BJ	skin:	n/a
26	chr14:106408885-106408935	Jurkat	blood:	n/a
27	chr14:106317313-106317363	AG04449	skin:	fetal
28	chr14:106321551-106321601	Caco-2	colon:	n/a
29	chr14:106333919-106333969	Hela-S3	cervix:	n/a
30	chr14:106438635-106438685	HCM	heart:	n/a
31	chr14:106383155-106383205	PFSK-1	brain:	n/a
32	chr14:106382726-106382776	NB4	blood:	n/a
33	chr14:106306929-106306979	SK-N-SH_RA	brain:	n/a
34	chr14:106321226-106321276	HAEpiC	amniotic membrane:	n/a
35	chr14:106444683-106444733	Hela-S3	cervix:	n/a
36	chr14:106306830-106306880	T-47D	breast:	n/a
37	chr14:106366503-106366553	PrEC	prostate:	n/a
38	chr14:106320669-106320719	GM19239	blood:	n/a
39	chr14:106307623-106307673	AG10803	skin:	n/a
40	chr14:106321751-106321801	NH-A	brain:	n/a
41	chr14:106322429-106322479	AG04449	skin:	fetal
42	chr14:106437822-106437872	SAEC	small airway:	n/a
43	chr14:106444697-106444747	MCF10A-Er-Src	breast:	n/a
44	chr14:106307623-106307673	SK-N-MC	brain:	n/a
45	chr14:106410628-106410678	IMR90	lung:	fetal
46	chr14:106322163-106322213	GM12878	blood:	n/a
47	chr14:106598038-106598088	SKMC	muscle:	n/a
48	chr14:106320510-106320560	U87	brain:	n/a
49	chr14:106320202-106320252	BJ	skin:	n/a
50	chr14:106329607-106329657	ECC-1	luminal epithelium:	n/a

(count:104 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr14:106551152..106552056-chr14:106571629..106572476,2	MCF-7	breast:
2	chr12:125397315..125399250-chr14:106297763..106299810,2	MCF-7	breast:
3	chr14:106287731..106289344-chr14:106305806..106307641,2	MCF-7	breast:
4	chr14:106598214..106598843-chr16:32050606..32051126,2	MCF-7	breast:
5	chr14:106276485..106277986-chr14:106279543..106281690,2	MCF-7	breast:
6	chr14:106440507..106441758-chr14:106465321..106466058,9	MCF-7	breast:
7	chr14:106440698..106441619-chr14:106501147..106501693,2	K562	blood:
8	chr14:106511325..106513024-chr14:106516262..106518239,2	MCF-7	breast:
9	chr14:106440719..106441721-chr14:106467122..106467964,7	MCF-7	breast:
10	chr14:106626707..106627455-chr14:106690888..106691871,2	MCF-7	breast:
11	chr14:106395125..106397602-chr14:106398422..106401278,2	MCF-7	breast:
12	chr14:106357610..106359618-chr14:106363660..106366186,2	MCF-7	breast:
13	chr14:106550641..106551162-chr14:107147401..107148069,2	MCF-7	breast:
14	chr14:106471887..106472387-chr15:22467015..22467530,2	MCF-7	breast:
15	chr14:106465460..106466067-chr14:106501279..106502020,3	MCF-7	breast:
16	chr14:106626950..106627461-chr14:107075175..107076177,3	MCF-7	breast:
17	chr14:106493593..106494215-chr14:106501260..106501794,2	MCF-7	breast:
18	chr14:106501271..106501841-chr5:172197503..172198051,2	MCF-7	breast:
19	chr14:106331478..106333365-chr14:106353559..106356151,2	MCF-7	breast:
20	chr14:106598367..106599026-chr14:106873068..106874049,2	MCF-7	breast:
21	chr14:106369157..106371696-chr14:106380608..106383317,2	MCF-7	breast:
22	chr14:106440899..106441514-chr14:106495413..106495913,2	MCF-7	breast:
23	chr14:106440899..106441514-chr14:106495413..106495913,2	MCF-7	breast:
24	chr14:106465564..106466153-chr14:106626622..106627622,2	MCF-7	breast:
25	chr14:106465483..106466336-chr15:22460872..22461408,7	MCF-7	breast:
26	chr14:106465519..106466042-chr14:106873215..106874176,2	MCF-7	breast:
27	chr14:106369157..106371696-chr14:106380608..106383317,2	MCF-7	breast:
28	chr14:106331478..106333365-chr14:106353559..106356151,2	MCF-7	breast:
29	chr14:106004357..106005325-chr14:106501249..106501774,2	MCF-7	breast:
30	chr14:106411454..106412357-chr14:106501119..106502057,2	MCF-7	breast:
31	chr14:106003924..106004853-chr14:106501128..106502045,2	K562	blood:
32	chr14:106465484..106466150-chr14:106626973..106627642,2	K562	blood:
33	chr14:106465322..106465986-chr14:106497365..106497947,2	MCF-7	breast:
34	chr14:106465072..106466455-chr15:22460712..22462209,25	MCF-7	breast:
35	chr14:106465484..106466150-chr14:106626973..106627642,2	K562	blood:
36	chr14:106440719..106442059-chr14:106465063..106466063,8	MCF-7	breast:
37	chr14:106440719..106442059-chr14:106465063..106466063,8	MCF-7	breast:
38	chr14:106440954..106441492-chr15:22436039..22436774,4	MCF-7	breast:
39	chr14:106390866..106392528-chr14:106395486..106397843,2	MCF-7	breast:
40	chr14:106390866..106392528-chr14:106395486..106397843,2	MCF-7	breast:
41	chr14:106410879..106412492-chr14:106465459..106466046,7	MCF-7	breast:
42	chr14:106465460..106466067-chr14:106501279..106502020,3	MCF-7	breast:
43	chr14:106357610..106359618-chr14:106363660..106366186,2	MCF-7	breast:
44	chr14:106465564..106466153-chr14:106626622..106627622,2	MCF-7	breast:
45	chr14:106353674..106356669-chr14:106359643..106361193,2	MCF-7	breast:
46	chr14:106573150..106573666-chr14:106691274..106691935,2	MCF-7	breast:
47	chr14:106411533..106412243-chr14:106501543..106502180,2	MCF-7	breast:
48	chr14:106328114..106329780-chr14:106329948..106332009,2	MCF-7	breast:
49	chr14:106272339..106275249-chr14:106284061..106286088,2	MCF-7	breast:
50	chr14:106501380..106501994-chr20:46012603..46013195,2	MCF-7	breast:

(count:112 , 50 per page) page: 1 2 3

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL901608.1-11	chr14:106451791-106451798	NONHSAT040372
2	lnc-TMEM121-2	chr14:106330427-106330470	NONHSAT040430
3	lnc-AL901608.1-11	chr14:106344966-106345008	NONHSAT040374
4	lnc-KIAA0125-4	chr14:106388400-106388531	NONHSAT040447
5	lnc-TMEM121-2	chr14:106329409-106329491	NONHSAT040400
6	lnc-AL901608.1-11	chr14:106513549-106513559	NONHSAT040372
7	lnc-AL901608.1-11	chr14:106344966-106345008	NONHSAT040372
8	lnc-AL901608.1-3	chr14:106330426-106330464	NONHSAT040427
9	lnc-TMEM121-2	chr14:106322223-106322322	NONHSAT040409
10	lnc-AL901608.1-17	chr14:106587396-106587509	NONHSAT040462
11	lnc-AL901608.1-15	chr14:106512186-106512231	NONHSAT040458
12	lnc-AL901608.1-11	chr14:106625009-106625068	NONHSAT040371
13	lnc-AL901608.1-3	chr14:106478328-106478375	NONHSAT040390
14	lnc-TMEM121-2	chr14:106322130-106322322	NONHSAT040406
15	lnc-TMEM121-2	chr14:106322021-106322322	NONHSAT040403
16	lnc-AL901608.1-17	chr14:106584837-106585512	NONHSAT040462
17	lnc-AL901608.1-11	chr14:106454639-106454645	NONHSAT040372
18	lnc-AL901608.1-3	chr14:106330425-106330470	NONHSAT040410
19	lnc-AL901608.1-3	chr14:106478108-106478400	NONHSAT040434
20	lnc-AL901608.1-11	chr14:106359452-106359463	NONHSAT040373
21	lnc-KIAA0125-1	chr14:106361841-106361967	ENSG00000244620
22	lnc-KIAA0125-1	chr14:106361841-106361966	ENSG00000244620
23	lnc-AL901608.1-11	chr14:106359452-106359463	NONHSAT040374
24	lnc-KIAA0125-1	chr14:106355942-106356055	ENSG00000244620
25	lnc-AL901608.1-11	chr14:106395344-106395364	NONHSAT040372
26	lnc-TMEM121-2	chr14:106330426-106330471	NONHSAT040407
27	lnc-AL901608.1-11	chr14:106529749-106529765	NONHSAT040371
28	lnc-AL901608.1-17	chr14:106576816-106577071	NONHSAT040462
29	lnc-AL901608.1-21	chr14:106620270-106620489	NONHSAT040466
30	lnc-AL901608.1-11	chr14:106464137-106464145	NONHSAT040373
31	lnc-AL901608.1-3	chr14:106330426-106330459	NONHSAT040428
32	lnc-AL901608.1-11	chr14:106359452-106359463	NONHSAT040371
33	lnc-AL901608.1-11	chr14:106344966-106345008	NONHSAT040371
34	lnc-AL901608.1-15	chr14:106511782-106512082	NONHSAT040458
35	lnc-AL901608.1-11	chr14:106452250-106452260	NONHSAT040370
36	lnc-KIAA0125-4	chr14:106388058-106388203	NONHSAT040447
37	lnc-TMEM121-2	chr14:106322021-106322322	NONHSAT040402
38	lnc-AL901608.1-3	chr14:106427138-106427146	NONHSAT040434
39	lnc-TMEM121-2	chr14:106322010-106322322	NONHSAT040401
40	lnc-TMEM121-2	chr14:106321999-106322322	NONHSAT040400
41	lnc-AL901608.1-11	chr14:106344966-106345008	NONHSAT040370
42	lnc-AL901608.1-11	chr14:106359452-106359463	NONHSAT040366
43	lnc-AL901608.1-11	chr14:106464137-106464145	NONHSAT040371
44	lnc-AL901608.1-3	chr14:106330426-106330461	NONHSAT040426
45	lnc-TMEM121-2	chr14:106330798-106330839	NONHSAT040402
46	lnc-AL901608.1-3	chr14:106573192-106573526	NONHSAT040460
47	lnc-TMEM121-2	chr14:106452643-106452964	NONHSAT040453
48	lnc-AL901608.1-3	chr14:106380217-106380239	NONHSAT040434
49	lnc-AL901608.1-11	chr14:106464276-106464325	NONHSAT040371
50	lnc-TMEM121-2	chr14:106330798-106330868	NONHSAT040401

miRNA name	Chromosome Location	mirBase accession
hsa-miR-4538	chr14:106324390-106324411	MIMAT0019081
hsa-miR-4537	chr14:106325701-106325722	MIMAT0019080
hsa-miR-4539	chr14:106323682-106323703	MIMAT0019082
hsa-miR-4507	chr14:106324294-106324313	MIMAT0019044

No data

Variant related genes	Relation type
IGHJ1P	TF binding region
IGHVIII-13-1	TF binding region
IGHV1-8	TF binding region
IGHD3-16	TF binding region
IGHVIII-16-1	TF binding region
IGHV1-12	TF binding region
IGHV3-11	TF binding region
ENSG00000265714	TF binding region
ENSG00000264473	TF binding region
IGHJ6	TF binding region
IGHD5-5	TF binding region
IGHV1-2	TF binding region
IGHD3-10	TF binding region
IGHD4-17	TF binding region
ENSG00000225200	TF binding region
ENSG00000264781	TF binding region
IGHD	TF binding region
IGHD4-4	TF binding region
IGHD3-22	TF binding region
IGHVII-15-1	TF binding region
IGHD3-9	TF binding region
IGHV3-15	TF binding region
IGHVIII-11-1	TF binding region
IGHV4-4	TF binding region
IGHD6-13	TF binding region
IGHD5-18	TF binding region
ENSG00000266706	TF binding region
KIAA0125	TF binding region
IGHV1-3	TF binding region
IGHD4-23	TF binding region
IGHD1-26	TF binding region
IGHD2-8	TF binding region
IGHD7-27	TF binding region
ENSG00000263751	TF binding region
IGHJ3	TF binding region
IGHV3-6	TF binding region
IGHV1-17	TF binding region
ENSG00000244620	TF binding region
IGHD6-19	TF binding region
IGHJ5	TF binding region
IGHVIII-5-2	TF binding region
IGHD1-20	TF binding region
IGHD2-15	TF binding region
IGHJ1	TF binding region
IGHD2-2	TF binding region
IGHD1-7	TF binding region
IGHV3-13	TF binding region
IGHJ4	TF binding region
IGHD4-11	TF binding region
IGHD5-24	TF binding region
ENSG00000265517	TF binding region
IGHV3-16	TF binding region
IGHV2-10	TF binding region
IGHM	TF binding region
IGHVIII-2-1	TF binding region
IGHD6-6	TF binding region
IGHV2-5	TF binding region
IGHV3-7	TF binding region
IGHJ3P	TF binding region
IGHD1-14	TF binding region
IGHD6-25	TF binding region
IGHD1-1	TF binding region
ADAM6	TF binding region
ENSG00000266408	TF binding region
IGHV1-14	TF binding region
IGHJ2P	TF binding region
IGHD2-21	TF binding region
IGHJ2	TF binding region
IGHV6-1	TF binding region
IGHVIII-5-1	TF binding region
IGHD3-3	TF binding region
ENSG00000265612	TF binding region
ENSG00000270371	TF binding region
IGHV3-9	TF binding region
IGHD5-12	TF binding region
IGHVII-1-1	TF binding region
IGHJ1P	CpG island
IGHVIII-13-1	CpG island
IGHV1-8	CpG island
IGHD3-16	CpG island
IGHVIII-16-1	CpG island
IGHV1-12	CpG island
IGHV3-11	CpG island
ENSG00000265714	CpG island
ENSG00000264473	CpG island
IGHJ6	CpG island
IGHD5-5	CpG island
IGHV1-2	CpG island
IGHD3-10	CpG island
IGHD4-17	CpG island
ENSG00000225200	CpG island
ENSG00000264781	CpG island
IGHD	CpG island
IGHD4-4	CpG island
IGHD3-22	CpG island
IGHVII-15-1	CpG island
IGHD3-9	CpG island
IGHV3-15	CpG island
IGHVIII-11-1	CpG island
IGHV4-4	CpG island
IGHD6-13	CpG island
IGHD5-18	CpG island
ENSG00000266706	CpG island
KIAA0125	CpG island
IGHV1-3	CpG island
IGHD4-23	CpG island
IGHD1-26	CpG island
IGHD2-8	CpG island
IGHD7-27	CpG island
ENSG00000263751	CpG island
IGHJ3	CpG island
IGHV3-6	CpG island
IGHV1-17	CpG island
ENSG00000244620	CpG island
IGHD6-19	CpG island
IGHJ5	CpG island
IGHVIII-5-2	CpG island
IGHD1-20	CpG island
IGHD2-15	CpG island
IGHJ1	CpG island
IGHD2-2	CpG island
IGHD1-7	CpG island
IGHV3-13	CpG island
IGHJ4	CpG island
IGHD4-11	CpG island
IGHD5-24	CpG island
ENSG00000265517	CpG island
IGHV3-16	CpG island
IGHV2-10	CpG island
IGHM	CpG island
IGHVIII-2-1	CpG island
IGHD6-6	CpG island
IGHV2-5	CpG island
IGHV3-7	CpG island
IGHJ3P	CpG island
IGHD1-14	CpG island
IGHD6-25	CpG island
IGHD1-1	CpG island
ADAM6	CpG island
ENSG00000266408	CpG island
IGHV1-14	CpG island
IGHJ2P	CpG island
IGHD2-21	CpG island
IGHJ2	CpG island
IGHV6-1	CpG island
IGHVIII-5-1	CpG island
IGHD3-3	CpG island
ENSG00000265612	CpG island
ENSG00000270371	CpG island
IGHV3-9	CpG island
IGHD5-12	CpG island
IGHVII-1-1	CpG island
ENSG00000211920	chromatin interactions
ENSG00000211904	chromatin interactions
ENSG00000242887	chromatin interactions
ENSG00000170779	chromatin interactions
ENSG00000254279	chromatin interactions
ENSG00000242472	chromatin interactions
ENSG00000211939	chromatin interactions
ENSG00000253989	chromatin interactions
ENSG00000211917	chromatin interactions
ENSG00000253763	chromatin interactions
ENSG00000211936	chromatin interactions
ENSG00000150991	chromatin interactions
ENSG00000227800	chromatin interactions
ENSG00000211915	chromatin interactions
ENSG00000227335	chromatin interactions
ENSG00000253759	chromatin interactions
ENSG00000211900	chromatin interactions
ENSG00000244620	chromatin interactions
ENSG00000237111	chromatin interactions
ENSG00000227108	chromatin interactions
ENSG00000211921	chromatin interactions
ENSG00000211924	chromatin interactions
ENSG00000236597	chromatin interactions
ENSG00000232543	chromatin interactions
ENSG00000254053	chromatin interactions
ENSG00000211918	chromatin interactions
ENSG00000211925	chromatin interactions
ENSG00000211923	chromatin interactions
ENSG00000211905	chromatin interactions
ENSG00000253755	chromatin interactions
ENSG00000211912	chromatin interactions
ENSG00000240041	chromatin interactions
ENSG00000260739	chromatin interactions
ENSG00000211931	chromatin interactions
ENSG00000237547	chromatin interactions

Extended variants
information (count: 21095 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:21095 , 50 per page) page: 1 2 3 4 5 6 7 ... 422

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74093886	chr14:106252792-106252793	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs570234698	chr14:106252823-106252824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs35328557	chr14:106252850-106252851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs141141604	chr14:106252872-106252873	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs537310900	chr14:106252953-106252954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs139904936	chr14:106252996-106252997	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs10145102	chr14:106253092-106253093	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs79549442	chr14:106253176-106253177	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs2725176	chr14:106253183-106253184	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs150910438	chr14:106259229-106259230	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs562311952	chr14:106259249-106259250	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs189569467	chr14:106259285-106259286	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs551343551	chr14:106259346-106259347	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs560572730	chr14:106259388-106259389	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs192974329	chr14:106259405-106259406	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs549482847	chr14:106259433-106259434	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs567746586	chr14:106259438-106259439	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs184293141	chr14:106259439-106259440	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs369691669	chr14:106259482-106259483	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs188349876	chr14:106259486-106259487	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs367657149	chr14:106259537-106259538	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs550419906	chr14:106259631-106259632	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs12894831	chr14:106259642-106259643	ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs539328965	chr14:106259650-106259651	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs117111862	chr14:106259698-106259699	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs138363494	chr14:106259749-106259750	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs78627922	chr14:106259753-106259754	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs79574199	chr14:106259769-106259770	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs2753578	chr14:106259853-106259854	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs149247867	chr14:106259854-106259855	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs565296663	chr14:106259914-106259915	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs147366311	chr14:106259928-106259929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs543854384	chr14:106259992-106259993	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs181836580	chr14:106260018-106260019	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs577404761	chr14:106260021-106260022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs75048221	chr14:106260032-106260033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs557605975	chr14:106260047-106260048	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs571226416	chr14:106260073-106260074	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs560165120	chr14:106260156-106260157	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs527718711	chr14:106260187-106260188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs186449495	chr14:106260226-106260227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs561238398	chr14:106260228-106260229	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs371409933	chr14:106260242-106260243	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs188913624	chr14:106260256-106260257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs77269068	chr14:106260258-106260259	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs531845769	chr14:106260303-106260304	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs550258997	chr14:106260308-106260309	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs571910353	chr14:106260312-106260313	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs538855265	chr14:106260331-106260332	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs181711775	chr14:106260339-106260340	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Neuroblastoma	18923191	CNVD
cataract	16735990	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Developmental delay	21147756	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Biliary cancer	19435499	CNVD
Follicular lymphoma	20505157	CNVD
Acute lymphoblastic leukemia	20139093	CNVD
Hepatocellular carcinoma	16750200	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Glioblastoma multiforme	21922591	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Ovarian cancer	22174824	CNVD
Non-small cell lung cancer	18320023	CNVD
Melanoma	17363583	CNVD
Congenital heart defect	22367666	CNVD
Developmental delay	22367666	CNVD
Genitourinary abnormalities	22367666	CNVD
Intellectual disability	22367666	CNVD
Microcephaly	22367666	CNVD
Muscularhypotonia	22367666	CNVD
Ocular coloboma	22367666	CNVD
Teratozoospermia	22367666	CNVD
Cervical cancer	21062161	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	21990379	CNVD
Breast cancer	16417655	CNVD
22q11 deletion syndrome	22511897	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Schizophrenia	21399695	CNVD
Intracranial ependymoma	16609018	CNVD
Lung adenocarcinoma	17086460	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
14q deletion syndrome	22511897	CNVD
Epilepsy	22083797	CNVD
Ovarian cancer	21720365	CNVD
Cancer	17440070	CNVD
Neurocytoma	17123091	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Central neurocytomas	17123091	CNVD
Acute lymphoblastic leukemia	17315016	CNVD
Lung cancer	17086460	CNVD
small cell lung cancer	17426248	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Williams Syndrome	20824207	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	23813976	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1877 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106251800-106253200	Enhancers	Primary B cells from peripheral blood	blood
2	chr14:106259200-106259800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
3	chr14:106259600-106260800	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:106259600-106261000	Enhancers	Primary B cells from cord blood	blood
5	chr14:106259800-106260400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr14:106259800-106260600	Enhancers	Primary hematopoietic stem cells	blood
7	chr14:106259800-106260600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:106260000-106260400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:106260400-106263000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:106263000-106263600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:106263200-106263600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:106269800-106270200	Enhancers	Primary B cells from peripheral blood	blood
13	chr14:106272600-106273200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:106276200-106277000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr14:106281200-106284600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:106281200-106285800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:106281600-106288200	Enhancers	Primary hematopoietic stem cells	blood
18	chr14:106281800-106288800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:106282000-106284800	Enhancers	Primary B cells from peripheral blood	blood
20	chr14:106282000-106288200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr14:106282600-106282800	Enhancers	Primary B cells from cord blood	blood
22	chr14:106282800-106283400	Weak transcription	Primary B cells from cord blood	blood
23	chr14:106283400-106288400	Enhancers	Primary B cells from cord blood	blood
24	chr14:106284000-106285800	Enhancers	GM12878-XiMat	blood
25	chr14:106284000-106286800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr14:106284600-106285000	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr14:106284600-106285400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:106284800-106285400	Flanking Active TSS	Primary B cells from peripheral blood	blood
29	chr14:106285400-106287200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:106285400-106288200	Enhancers	Primary B cells from peripheral blood	blood
31	chr14:106287200-106287400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:106287400-106287600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:106287600-106287800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:106287800-106290400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr14:106288200-106289400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr14:106288800-106289200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:106289200-106290400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr14:106289400-106289600	Enhancers	Primary B cells from peripheral blood	blood
39	chr14:106296200-106297000	Weak transcription	Primary B cells from cord blood	blood
40	chr14:106296400-106297200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:106296400-106297600	Enhancers	Primary B cells from peripheral blood	blood
42	chr14:106296600-106297000	Enhancers	Fetal Thymus	thymus
43	chr14:106296800-106297600	Enhancers	Thymus	Thymus
44	chr14:106297000-106297400	Strong transcription	Primary B cells from cord blood	blood
45	chr14:106297200-106304400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:106297400-106304400	Weak transcription	Primary B cells from cord blood	blood
47	chr14:106297600-106301200	Weak transcription	Primary B cells from peripheral blood	blood
48	chr14:106299800-106309800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr14:106301000-106303800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr14:106301000-106306000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links