Variant report

Variant	nsv1039005
Chromosome Location	chr15:87228489-87813438
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2095)
CpG islands
(count:794)
Chromatin interactive
region (count:114)
LncRNA
region (count:24)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2095 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr15:87420390-87420629	H1-hESC	embryonic stem cell:	n/a	chr15:87420485-87420499
2	BACH1	chr15:87671754-87671767	K562	blood:	n/a	n/a
3	BACH1	chr15:87691234-87691359	K562	blood:	n/a	n/a
4	BATF	chr15:87422079-87422348	GM12878	blood:	n/a	chr15:87422248-87422259
5	BATF	chr15:87422091-87422435	GM12878	blood:	n/a	chr15:87422248-87422259
6	BHLHE40	chr15:87459094-87459179	K562	blood:	n/a	n/a
7	BRCA1	chr15:87581580-87582051	H1-hESC	embryonic stem cell:	n/a	n/a
8	BRCA1	chr15:87581817-87581917	GM12878	blood:	n/a	n/a
9	BRCA1	chr15:87711755-87711765	GM12878	blood:	n/a	n/a
10	CEBPB	chr15:87315856-87316220	HepG2	liver:	n/a	chr15:87316051-87316062
11	CEBPB	chr15:87699020-87699277	IMR90	lung:	n/a	n/a
12	CEBPB	chr15:87699074-87699283	MCF-7	breast:	n/a	n/a
13	CEBPB	chr15:87489233-87489496	Hela-S3	cervix:	n/a	chr15:87489390-87489401 chr15:87489389-87489402
14	CEBPB	chr15:87466123-87466374	HepG2	liver:	n/a	chr15:87466235-87466244 chr15:87466235-87466246 chr15:87466235-87466244 chr15:87466233-87466246 chr15:87466235-87466244 chr15:87466233-87466244 chr15:87466235-87466244
15	CEBPB	chr15:87315900-87316133	A549	lung:	n/a	chr15:87316051-87316062
16	CEBPB	chr15:87448553-87448844	A549	lung:	n/a	n/a
17	CEBPB	chr15:87755203-87755641	Hela-S3	cervix:	n/a	chr15:87755501-87755514
18	CEBPB	chr15:87467235-87467443	HepG2	liver:	n/a	chr15:87467298-87467311 chr15:87467299-87467310
19	CEBPB	chr15:87476995-87477102	A549	lung:	n/a	chr15:87477031-87477044 chr15:87477030-87477047
20	CEBPB	chr15:87388609-87388737	A549	lung:	n/a	n/a
21	CEBPB	chr15:87365309-87365509	A549	lung:	n/a	chr15:87365413-87365424
22	CEBPB	chr15:87489284-87489497	K562	blood:	n/a	chr15:87489390-87489401 chr15:87489389-87489402
23	CEBPB	chr15:87751409-87751838	MCF-7	breast:	n/a	n/a
24	CEBPB	chr15:87698069-87698393	MCF-7	breast:	n/a	n/a
25	CEBPB	chr15:87664517-87664947	Hela-S3	cervix:	n/a	chr15:87664589-87664600
26	CEBPB	chr15:87664459-87664881	HepG2	liver:	n/a	chr15:87664589-87664600
27	CEBPB	chr15:87298122-87298414	A549	lung:	n/a	chr15:87298255-87298266 chr15:87298278-87298291 chr15:87298255-87298268 chr15:87298278-87298289
28	CEBPB	chr15:87250124-87250382	A549	lung:	n/a	n/a
29	CEBPB	chr15:87393168-87393360	HepG2	liver:	n/a	chr15:87393299-87393310
30	CEBPB	chr15:87588734-87589340	MCF-7	breast:	n/a	n/a
31	CEBPB	chr15:87588786-87589348	Hela-S3	cervix:	n/a	n/a
32	CEBPB	chr15:87535890-87536107	HepG2	liver:	n/a	chr15:87536028-87536037 chr15:87536026-87536037
33	CEBPB	chr15:87751485-87751724	A549	lung:	n/a	n/a
34	CEBPB	chr15:87588698-87589472	MCF-7	breast:	n/a	n/a
35	CEBPB	chr15:87490143-87490312	A549	lung:	n/a	n/a
36	CEBPB	chr15:87410277-87410533	IMR90	lung:	n/a	chr15:87410410-87410421 chr15:87410408-87410419
37	CEBPB	chr15:87250169-87250405	K562	blood:	n/a	n/a
38	CEBPB	chr15:87504260-87504539	HepG2	liver:	n/a	chr15:87504391-87504402
39	CEBPB	chr15:87558480-87559532	MCF-7	breast:	n/a	n/a
40	CEBPB	chr15:87436088-87436357	H1-hESC	embryonic stem cell:	n/a	chr15:87436166-87436177 chr15:87436167-87436178
41	CEBPB	chr15:87298163-87298421	IMR90	lung:	n/a	chr15:87298255-87298266 chr15:87298278-87298291 chr15:87298255-87298268 chr15:87298278-87298289
42	CEBPB	chr15:87489248-87489546	IMR90	lung:	n/a	chr15:87489390-87489401 chr15:87489389-87489402
43	CEBPB	chr15:87468728-87468944	MCF-7	breast:	n/a	n/a
44	CEBPB	chr15:87512332-87512699	HepG2	liver:	n/a	chr15:87512511-87512522
45	CEBPB	chr15:87436140-87436330	HepG2	liver:	n/a	chr15:87436166-87436177 chr15:87436167-87436178
46	CEBPB	chr15:87512435-87512697	MCF-7	breast:	n/a	chr15:87512511-87512522
47	CEBPB	chr15:87466087-87466256	A549	lung:	n/a	chr15:87466235-87466244 chr15:87466235-87466246 chr15:87466235-87466244 chr15:87466233-87466246 chr15:87466235-87466244 chr15:87466233-87466244 chr15:87466235-87466244
48	CEBPB	chr15:87489212-87489570	A549	lung:	n/a	chr15:87489390-87489401 chr15:87489389-87489402
49	CEBPB	chr15:87664444-87664938	A549	lung:	n/a	chr15:87664589-87664600
50	CEBPB	chr15:87751087-87751792	Hela-S3	cervix:	n/a	n/a

(count:794 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:87410878-87410928	HEEpiC	esophagus:	n/a
2	chr15:87410878-87410928	HEEpiC	esophagus:	n/a
3	chr15:87436107-87436157	AG10803	skin:	n/a
4	chr15:87758226-87758276	SAEC	small airway:	n/a
5	chr15:87667171-87667221	NHDF-neo	bronchial:	n/a
6	chr15:87667171-87667221	AG04450	lung:	fetal
7	chr15:87455477-87455527	HCPEpiC	choroid plexus:	n/a
8	chr15:87807847-87807897	PrEC	prostate:	n/a
9	chr15:87667434-87667484	SAEC	small airway:	n/a
10	chr15:87436107-87436157	HRPEpiC	eye:	n/a
11	chr15:87455477-87455527	HNPCEpiC	eye:	n/a
12	chr15:87667434-87667484	AG09319	gingival:	n/a
13	chr15:87807847-87807897	ProgFib	skin:	n/a
14	chr15:87667131-87667181	HCPEpiC	choroid plexus:	n/a
15	chr15:87667390-87667440	CMK	blood:	n/a
16	chr15:87758226-87758276	K562	blood:	n/a
17	chr15:87414956-87415006	Jurkat	blood:	n/a
18	chr15:87460178-87460228	NH-A	brain:	n/a
19	chr15:87436107-87436157	BE2_C	brain:	n/a
20	chr15:87667552-87667602	HCF	heart:	n/a
21	chr15:87436107-87436157	HCT-116	colon:	n/a
22	chr15:87758226-87758276	ProgFib	skin:	n/a
23	chr15:87667131-87667181	ECC-1	luminal epithelium:	n/a
24	chr15:87667131-87667181	AG09309	skin:	n/a
25	chr15:87667390-87667440	PANC-1	pancreas:	n/a
26	chr15:87667171-87667221	GM12892	blood:	n/a
27	chr15:87807847-87807897	NT2-D1	testis:	n/a
28	chr15:87460178-87460228	GM12891	blood:	n/a
29	chr15:87436107-87436157	HCM	heart:	n/a
30	chr15:87667434-87667484	Caco-2	colon:	n/a
31	chr15:87460178-87460228	HNPCEpiC	eye:	n/a
32	chr15:87667552-87667602	AG09309	skin:	n/a
33	chr15:87455477-87455527	HEEpiC	esophagus:	n/a
34	chr15:87460178-87460228	Caco-2	colon:	n/a
35	chr15:87436107-87436157	NHBE	bronchial:	n/a
36	chr15:87516203-87516253	AG04450	lung:	fetal
37	chr15:87516203-87516253	AG09319	gingival:	n/a
38	chr15:87460178-87460228	GM12892	blood:	n/a
39	chr15:87667131-87667181	AG04450	lung:	fetal
40	chr15:87667390-87667440	GM06990	blood:	n/a
41	chr15:87414956-87415006	NB4	blood:	n/a
42	chr15:87460178-87460228	Jurkat	blood:	n/a
43	chr15:87667434-87667484	MCF-7	breast:	n/a
44	chr15:87667390-87667440	SAEC	small airway:	n/a
45	chr15:87758226-87758276	HNPCEpiC	eye:	n/a
46	chr15:87410878-87410928	PANC-1	pancreas:	n/a
47	chr15:87455477-87455527	Caco-2	colon:	n/a
48	chr15:87455477-87455527	HepG2	liver:	n/a
49	chr15:87455477-87455527	HIPEpiC	eye:	n/a
50	chr15:87667552-87667602	Hela-S3	cervix:	n/a

(count:114 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr15:87299754..87300537-chr5:74333585..74334466,2	MCF-7	breast:
2	chr15:87286720..87287220-chr15:87446694..87447539,2	MCF-7	breast:
3	chr15:87407387..87407922-chr15:87424868..87425466,2	MCF-7	breast:
4	chr15:87341242..87343281-chr15:87344926..87347141,2	K562	blood:
5	chr15:87697291..87699690-chr15:87706796..87708565,2	MCF-7	breast:
6	chr15:87451474..87454428-chr15:87455862..87457463,2	MCF-7	breast:
7	chr15:87664612..87666658-chr15:87671370..87673552,2	MCF-7	breast:
8	chr15:87377017..87379430-chr15:87379438..87381576,2	MCF-7	breast:
9	chr15:87805541..87807415-chr15:87810656..87812181,2	K562	blood:
10	chr15:87616838..87619677-chr15:87654360..87656187,2	MCF-7	breast:
11	chr15:87243519..87246420-chr15:87251248..87252995,2	K562	blood:
12	chr15:87808470..87810475-chr15:87811327..87812995,2	K562	blood:
13	chr15:87459185..87461823-chr15:88019854..88022278,2	MCF-7	breast:
14	chr15:87234193..87234906-chr15:87286647..87287353,2	MCF-7	breast:
15	chr15:87733826..87735446-chr15:87763671..87765321,2	MCF-7	breast:
16	chr15:87167635..87168468-chr15:87286275..87286780,2	MCF-7	breast:
17	chr15:87406950..87407887-chr15:87434556..87435083,2	MCF-7	breast:
18	chr15:87451474..87454428-chr15:87455862..87457463,2	MCF-7	breast:
19	chr15:87697291..87699690-chr15:87706796..87708565,2	MCF-7	breast:
20	chr15:87664612..87666658-chr15:87671370..87673552,2	MCF-7	breast:
21	chr15:87634767..87638633-chr15:87639992..87643377,3	MCF-7	breast:
22	chr15:87634767..87638633-chr15:87639992..87643377,3	MCF-7	breast:
23	chr15:87588638..87589626-chr15:87664512..87665513,3	MCF-7	breast:
24	chr15:87733455..87734185-chr15:87830026..87830805,2	MCF-7	breast:
25	chr15:87732266..87735003-chr15:88069190..88071031,2	MCF-7	breast:
26	chr15:87399134..87399678-chr15:87407572..87408255,2	MCF-7	breast:
27	chr15:86563631..86565320-chr15:87254975..87256906,2	MCF-7	breast:
28	chr15:87805541..87807415-chr15:87810656..87812181,2	K562	blood:
29	chr15:86775206..86776046-chr15:87299657..87300527,2	MCF-7	breast:
30	chr15:86408219..86408954-chr15:87286246..87286789,2	MCF-7	breast:
31	chr15:87614917..87617542-chr15:87884439..87886255,2	MCF-7	breast:
32	chr15:87694136..87695911-chr15:87846882..87849642,2	K562	blood:
33	chr15:87417928..87418618-chr21:47573271..47573823,2	MCF-7	breast:
34	chr15:87399134..87399678-chr15:87407572..87408255,2	MCF-7	breast:
35	chr15:87780992..87784583-chr15:87786843..87790425,3	K562	blood:
36	chr15:87482129..87484296-chr15:87498244..87500478,2	MCF-7	breast:
37	chr15:87666031..87668174-chr15:87674235..87675823,2	MCF-7	breast:
38	chr15:87808470..87810475-chr15:87811327..87812995,2	K562	blood:
39	chr15:87243519..87246420-chr15:87251248..87252995,2	K562	blood:
40	chr15:87733638..87735331-chr15:87739844..87741896,2	MCF-7	breast:
41	chr15:86775189..86776132-chr15:87286143..87287184,5	MCF-7	breast:
42	chr15:87579937..87582914-chr15:88062293..88064888,2	MCF-7	breast:
43	chr15:87733763..87735542-chr15:87742187..87743729,2	K562	blood:
44	chr15:87662307..87663890-chr15:87676905..87678767,2	MCF-7	breast:
45	chr15:87411896..87413673-chr15:87415953..87418421,2	MCF-7	breast:
46	chr15:87711645..87713686-chr15:87716504..87718249,2	MCF-7	breast:
47	chr15:87458807..87459628-chr15:88502158..88502983,2	MCF-7	breast:
48	chr15:87735099..87738085-chr15:87738807..87741278,4	MCF-7	breast:
49	chr15:87286720..87287220-chr15:87446694..87447539,2	MCF-7	breast:
50	chr15:87234193..87234906-chr15:87286647..87287353,2	MCF-7	breast:

(count:24 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AGBL1-1	chr15:87590028-87590392	ENSG00000259761.1
2	lnc-AKAP13-1	chr15:87476111-87476200	ENSG00000259636.1
3	lnc-AKAP13-1	chr15:87489413-87489562	ENSG00000259636.1
4	lnc-NTRK3-6	chr15:87722635-87722997	l_1211_chr15:87720517-87722997_testes
5	lnc-AGBL1-6	chr15:87744399-87744607	l_1213_chr15:87744398-87764111_testes
6	lnc-AKAP13-6	chr15:87457674-87459386	NONHSAT048138
7	lnc-AGBL1-6	chr15:87763690-87764111	l_1213_chr15:87744398-87764111_testes
8	lnc-NTRK3-3	chr15:87482028-87482321	ENSG00000259620.1
9	lnc-NTRK3-6	chr15:87720518-87722481	l_1211_chr15:87720517-87722997_testes
10	lnc-AGBL1-6	chr15:87754790-87754937	l_1213_chr15:87744398-87764111_testes
11	lnc-AGBL1-5	chr15:87739263-87740701	ucscGeneNc_uc002bnw_1
12	lnc-AGBL1-5	chr15:87732052-87732116	ucscGeneNc_uc002bnw_1
13	lnc-AGBL1-5	chr15:87723283-87723504	ucscGeneNc_uc002bnw_1
14	lnc-AGBL1-5	chr15:87732736-87732816	ucscGeneNc_uc002bnw_1
15	lnc-AGBL1-5	chr15:87733580-87733717	ucscGeneNc_uc002bnw_1
16	lnc-NTRK3-3	chr15:87531568-87531657	ENSG00000259620.1
17	lnc-AKAP13-1	chr15:87478314-87478424	ENSG00000259636.1
18	lnc-AGBL1-5	chr15:87731666-87731773	ucscGeneNc_uc002bnw_1
19	lnc-AGBL1-5	chr15:87722277-87722400	ucscGeneNc_uc002bnw_1
20	lnc-AGBL1-1	chr15:87585285-87585428	ENSG00000259761.1
21	lnc-NTRK3-6	chr15:87721877-87722287	NONHSAT048141
22	lnc-NTRK3-3	chr15:87482883-87482997	ENSG00000259620.1
23	lnc-KLHL25-18	chr15:87257065-87257449	expReg_chr15_7866_-
24	lnc-NTRK3-6	chr15:87709874-87712478	NONHSAT048141

No data

Variant related genes	Relation type
ENSG00000259761	TF binding region
ENSG00000259636	TF binding region
ENSG00000259620	TF binding region
ENSG00000259761	CpG island
ENSG00000259636	CpG island
ENSG00000259620	CpG island
ENSG00000207150	chromatin interactions

Extended variants
information (count: 14754 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:14754 , 50 per page) page: 1 2 3 4 5 6 7 ... 296

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs986079	chr15:87232413-87232414	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs145289359	chr15:87232417-87232418	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs182812218	chr15:87232421-87232422	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs537263096	chr15:87232423-87232424	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs555512176	chr15:87232433-87232434	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs111676736	chr15:87232467-87232468	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs112554614	chr15:87232483-87232484	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs567840085	chr15:87232499-87232500	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs140268539	chr15:87232541-87232542	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs575029850	chr15:87232549-87232550	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs76966606	chr15:87232565-87232566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs151158981	chr15:87232567-87232568	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs528362680	chr15:87232573-87232574	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs573254022	chr15:87232580-87232581	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs564881778	chr15:87232663-87232664	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs532360628	chr15:87232672-87232673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs186691898	chr15:87232689-87232690	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs192318404	chr15:87232703-87232704	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs141046353	chr15:87232708-87232709	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs548599499	chr15:87232710-87232711	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs183367549	chr15:87232719-87232720	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs369206573	chr15:87232774-87232775	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs75349411	chr15:87232809-87232810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs559207250	chr15:87232836-87232837	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs113951719	chr15:87232837-87232838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs538033140	chr15:87232846-87232847	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs556367025	chr15:87232895-87232896	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs534031427	chr15:87232912-87232913	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs145804907	chr15:87232928-87232929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs192040312	chr15:87232954-87232955	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs114744696	chr15:87232969-87232970	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs560121342	chr15:87244602-87244603	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs527930751	chr15:87244608-87244609	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs190199307	chr15:87244629-87244630	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs10520636	chr15:87244666-87244667	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs147828116	chr15:87244676-87244677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs531795708	chr15:87244680-87244681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs550376209	chr15:87244687-87244688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs568855614	chr15:87244744-87244745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs181948814	chr15:87244748-87244749	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs185955613	chr15:87244778-87244779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs140252398	chr15:87244804-87244805	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs1869183	chr15:87244865-87244866	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs373433979	chr15:87244870-87244871	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs375674021	chr15:87244884-87244885	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs200057079	chr15:87244892-87244893	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs190717149	chr15:87244893-87244894	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs76588366	chr15:87244929-87244930	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs138111711	chr15:87244988-87244989	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs113395619	chr15:87254003-87254004	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
abnormal development	18461090	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21364760	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Spondylocostal dysostosis	21085971	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Acute myeloid leukemia	17237825	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Acute myeloid leukemia	20962326	CNVD

Chromatin state (count:1004 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87232400-87233000	Enhancers	Fetal Brain Female	brain
2	chr15:87244600-87245000	Enhancers	Fetal Brain Female	brain
3	chr15:87254000-87254400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr15:87254200-87254800	Enhancers	Psoas Muscle	Psoas
5	chr15:87254400-87268800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:87254600-87255000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:87254600-87256400	Enhancers	Rectal Smooth Muscle	rectum
8	chr15:87254800-87255200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr15:87254800-87255200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr15:87254800-87255200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr15:87254800-87255200	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr15:87254800-87255400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:87254800-87258000	Enhancers	Fetal Stomach	stomach
14	chr15:87255200-87255600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:87255400-87256400	Enhancers	Colon Smooth Muscle	Colon
16	chr15:87255600-87256000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr15:87255800-87256200	Enhancers	Small Intestine	intestine
18	chr15:87255800-87256600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr15:87256000-87256200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr15:87256000-87256400	Enhancers	Placenta	Placenta
21	chr15:87256000-87256600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:87256200-87256400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr15:87256400-87256600	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr15:87256600-87257000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr15:87256600-87257600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:87256600-87258400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:87257000-87258400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr15:87257200-87258600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:87258000-87258200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:87268600-87269000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr15:87268800-87269600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:87269600-87270800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr15:87271200-87271400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr15:87275000-87275400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr15:87275400-87277200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:87277200-87277400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr15:87277400-87277800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:87277800-87278000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr15:87278000-87279200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:87278400-87279200	Enhancers	Gastric	stomach
41	chr15:87279200-87280600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr15:87279800-87280400	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr15:87279800-87280600	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr15:87280200-87280600	Enhancers	H1 Cell Line	embryonic stem cell
45	chr15:87280200-87280800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:87283000-87284400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:87283400-87284400	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr15:87284400-87285200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:87285200-87285800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:87285800-87287400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links