Variant report

Variant	nsv1039297
Chromosome Location	chr13:111101507-111138863
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:991)
CpG islands
(count:1221)
Chromatin interactive
region (count:38)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:991 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr13:111108300-111108560	HepG2	liver:	n/a	n/a
2	ARID3A	chr13:111108303-111108757	K562	blood:	n/a	n/a
3	ARID3A	chr13:111137921-111138251	HepG2	liver:	n/a	n/a
4	ATF1	chr13:111124021-111124486	K562	blood:	n/a	n/a
5	ATF2	chr13:111127955-111128352	GM12878	blood:	n/a	n/a
6	ATF2	chr13:111108170-111108771	GM12878	blood:	n/a	n/a
7	ATF2	chr13:111123308-111124511	GM12878	blood:	n/a	n/a
8	ATF2	chr13:111137790-111138286	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr13:111127530-111128391	GM12878	blood:	n/a	n/a
10	ATF2	chr13:111108215-111108853	H1-hESC	embryonic stem cell:	n/a	n/a
11	ATF2	chr13:111137856-111138239	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr13:111123286-111124549	GM12878	blood:	n/a	n/a
13	ATF2	chr13:111108137-111108738	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF3	chr13:111124155-111124470	K562	blood:	n/a	n/a
15	BACH1	chr13:111108263-111108629	K562	blood:	n/a	n/a
16	BACH1	chr13:111103353-111103522	K562	blood:	n/a	n/a
17	BACH1	chr13:111108240-111108761	H1-hESC	embryonic stem cell:	n/a	n/a
18	BATF	chr13:111124120-111124434	GM12878	blood:	n/a	n/a
19	BATF	chr13:111124029-111124464	GM12878	blood:	n/a	n/a
20	BATF	chr13:111108314-111108630	GM12878	blood:	n/a	n/a
21	BCL11A	chr13:111124004-111124511	GM12878	blood:	n/a	n/a
22	BCL11A	chr13:111123537-111123816	GM12878	blood:	n/a	n/a
23	BCL11A	chr13:111124080-111124464	GM12878	blood:	n/a	n/a
24	BCL11A	chr13:111137913-111138107	H1-hESC	embryonic stem cell:	n/a	n/a
25	BCL11A	chr13:111137948-111138194	H1-hESC	embryonic stem cell:	n/a	n/a
26	BCL11A	chr13:111123483-111123969	GM12878	blood:	n/a	n/a
27	BCL3	chr13:111123455-111123907	GM12878	blood:	n/a	n/a
28	BCL3	chr13:111135723-111135993	GM12878	blood:	n/a	n/a
29	BCL3	chr13:111107750-111108273	GM12878	blood:	n/a	n/a
30	BCL3	chr13:111124067-111124469	GM12878	blood:	n/a	n/a
31	BCL3	chr13:111107821-111108159	GM12878	blood:	n/a	n/a
32	BCL3	chr13:111116280-111116582	GM12878	blood:	n/a	n/a
33	BCL3	chr13:111126786-111127625	GM12878	blood:	n/a	n/a
34	BCL3	chr13:111135652-111136115	GM12878	blood:	n/a	n/a
35	BCL3	chr13:111126909-111127591	GM12878	blood:	n/a	n/a
36	BCLAF1	chr13:111108176-111108654	GM12878	blood:	n/a	n/a
37	BCLAF1	chr13:111123926-111124558	GM12878	blood:	n/a	n/a
38	BCLAF1	chr13:111108146-111108656	GM12878	blood:	n/a	n/a
39	BCLAF1	chr13:111123447-111124504	GM12878	blood:	n/a	n/a
40	BHLHE40	chr13:111108252-111108582	K562	blood:	n/a	n/a
41	BHLHE40	chr13:111118354-111118361	GM12878	blood:	n/a	n/a
42	BHLHE40	chr13:111137892-111138185	HepG2	liver:	n/a	n/a
43	BHLHE40	chr13:111123365-111124556	GM12878	blood:	n/a	n/a
44	BHLHE40	chr13:111127358-111127373	GM12878	blood:	n/a	n/a
45	BHLHE40	chr13:111112180-111112259	K562	blood:	n/a	n/a
46	BHLHE40	chr13:111116277-111116499	GM12878	blood:	n/a	n/a
47	BHLHE40	chr13:111111345-111111894	GM12878	blood:	n/a	n/a
48	BHLHE40	chr13:111108224-111108606	HepG2	liver:	n/a	n/a
49	BHLHE40	chr13:111124025-111124511	K562	blood:	n/a	n/a
50	BHLHE40	chr13:111116953-111117178	K562	blood:	n/a	n/a

(count:1221 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:111113412-111113462	NHBE	bronchial:	n/a
2	chr13:111113412-111113462	NHBE	bronchial:	n/a
3	chr13:111102234-111102284	Jurkat	blood:	n/a
4	chr13:111128054-111128104	RPTEC	kidney:	n/a
5	chr13:111102316-111102366	IMR90	lung:	fetal
6	chr13:111138063-111138113	SK-N-SH	brain:	n/a
7	chr13:111128102-111128152	AoSMC	blood vessel:	n/a
8	chr13:111128102-111128152	AG09309	skin:	n/a
9	chr13:111107905-111107955	HUVEC	blood vessel:	n/a
10	chr13:111117889-111117939	SK-N-SH_RA	brain:	n/a
11	chr13:111117889-111117939	Hela-S3	cervix:	n/a
12	chr13:111128071-111128121	Hepatocyte	liver:	n/a
13	chr13:111127601-111127651	CMK	blood:	n/a
14	chr13:111107167-111107217	PFSK-1	brain:	n/a
15	chr13:111109497-111109547	PANC-1	pancreas:	n/a
16	chr13:111102234-111102284	AG04450	lung:	fetal
17	chr13:111107075-111107125	GM12891	blood:	n/a
18	chr13:111123159-111123209	BE2_C	brain:	n/a
19	chr13:111102234-111102284	GM12892	blood:	n/a
20	chr13:111138063-111138113	HepG2	liver:	n/a
21	chr13:111109651-111109701	AG09319	gingival:	n/a
22	chr13:111127601-111127651	ECC-1	luminal epithelium:	n/a
23	chr13:111117889-111117939	BE2_C	brain:	n/a
24	chr13:111113412-111113462	Hela-S3	cervix:	n/a
25	chr13:111109497-111109547	AG09309	skin:	n/a
26	chr13:111115558-111115608	ECC-1	luminal epithelium:	n/a
27	chr13:111107905-111107955	PFSK-1	brain:	n/a
28	chr13:111123159-111123209	HNPCEpiC	eye:	n/a
29	chr13:111128054-111128104	HRE	kidney:	n/a
30	chr13:111137257-111137307	PANC-1	pancreas:	n/a
31	chr13:111127505-111127555	HMEC	breast:	n/a
32	chr13:111117889-111117939	HPAEpiC	pulmonary alveolar:	n/a
33	chr13:111107905-111107955	AG09319	gingival:	n/a
34	chr13:111109497-111109547	NHBE	bronchial:	n/a
35	chr13:111128054-111128104	NH-A	brain:	n/a
36	chr13:111109497-111109547	GM12878	blood:	n/a
37	chr13:111102234-111102284	NB4	blood:	n/a
38	chr13:111137257-111137307	GM12892	blood:	n/a
39	chr13:111128054-111128104	AG09309	skin:	n/a
40	chr13:111138063-111138113	Jurkat	blood:	n/a
41	chr13:111109651-111109701	NHDF-neo	bronchial:	n/a
42	chr13:111109497-111109547	HCPEpiC	choroid plexus:	n/a
43	chr13:111123159-111123209	Hela-S3	cervix:	n/a
44	chr13:111113412-111113462	Jurkat	blood:	n/a
45	chr13:111138063-111138113	U87	brain:	n/a
46	chr13:111107167-111107217	GM12892	blood:	n/a
47	chr13:111109497-111109547	AG09319	gingival:	n/a
48	chr13:111138063-111138113	Hepatocyte	liver:	n/a
49	chr13:111102316-111102366	LNCaP	prostate:	n/a
50	chr13:111117889-111117939	PFSK-1	brain:	n/a

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:111125375..111127376-chr13:111131017..111133682,2	K562	blood:
2	chr13:111100852..111102646-chr13:111187472..111189317,2	MCF-7	breast:
3	chr13:111107847..111110592-chr13:111111239..111113236,3	MCF-7	breast:
4	chr13:111123579..111125936-chr13:111162097..111164181,2	K562	blood:
5	chr13:111099808..111102511-chr13:111103410..111106369,2	K562	blood:
6	chr13:111132025..111133976-chr13:111134676..111137349,2	MCF-7	breast:
7	chr13:111106451..111110358-chr13:111364193..111366968,4	K562	blood:
8	chr13:111123294..111125798-chr13:111130475..111133407,2	K562	blood:
9	chr13:111111504..111113715-chr13:111115941..111118530,2	K562	blood:
10	chr13:111099808..111102511-chr13:111103410..111106369,2	K562	blood:
11	chr13:111108605..111110640-chr13:111363694..111365787,2	MCF-7	breast:
12	chr13:111136194..111138390-chr13:111154257..111156579,2	K562	blood:
13	chr13:111123294..111125798-chr13:111130475..111133407,2	K562	blood:
14	chr13:111107007..111108826-chr13:111174960..111176925,2	MCF-7	breast:
15	chr13:111105537..111108314-chr13:111364006..111365730,2	MCF-7	breast:
16	chr13:111137982..111139929-chr13:111150615..111152724,2	K562	blood:
17	chr13:111104435..111110355-chr13:111364229..111367898,5	MCF-7	breast:
18	chr13:111107824..111108748-chr13:111297271..111297854,2	MCF-7	breast:
19	chr13:111132025..111133976-chr13:111134676..111137349,2	MCF-7	breast:
20	chr13:111106958..111108527-chr13:111207084..111209733,2	MCF-7	breast:
21	chr13:111111504..111113715-chr13:111115941..111118530,2	K562	blood:
22	chr13:111099271..111103584-chr13:111104898..111108256,4	MCF-7	breast:
23	chr13:111107847..111110592-chr13:111111239..111113236,3	MCF-7	breast:
24	chr13:111107958..111109838-chr2:11209436..11210956,2	MCF-7	breast:
25	chr13:111107216..111109712-chr13:111113064..111115037,2	K562	blood:
26	chr13:111107934..111108475-chr13:111213682..111214212,2	K562	blood:
27	chr13:111125375..111127376-chr13:111131017..111133682,2	K562	blood:
28	chr13:111131234..111133582-chr13:111158039..111159936,2	K562	blood:
29	chr13:111107942..111108582-chr13:111159705..111160630,4	MCF-7	breast:
30	chr13:111121757..111123595-chr13:111366251..111368127,2	K562	blood:
31	chr13:111134838..111136595-chr13:111159284..111162082,2	MCF-7	breast:
32	chr13:111099271..111103584-chr13:111104898..111108256,4	MCF-7	breast:
33	chr13:111100223..111102719-chr13:111364020..111365835,2	MCF-7	breast:
34	chr13:111106850..111109675-chr13:111241801..111244096,2	MCF-7	breast:
35	chr13:111137005..111139926-chr13:111365403..111367570,2	K562	blood:
36	chr13:111108088..111108850-chr13:111179257..111180150,2	K562	blood:
37	chr13:111107610..111109499-chr13:111162077..111163995,2	K562	blood:
38	chr13:111106557..111109185-chr13:111212224..111215375,3	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL4A2-AS2-1	chr13:111108743-111109703	ENSG00000224821.5
2	lnc-COL4A2-AS2-1	chr13:111110438-111110633	ENSG00000224821.5
3	lnc-COL4A2-AS2-1	chr13:111110030-111110066	ENSG00000224821.5
4	lnc-COL4A2-AS2-1	chr13:111115370-111115634	ENSG00000224821.5
5	lnc-COL4A2-AS2-1	chr13:111109872-111109934	ENSG00000224821.5

No data

Variant related genes	Relation type
COL4A2-AS2	TF binding region
COL4A2	TF binding region
COL4A2-AS2	CpG island
COL4A2	CpG island
ENSG00000134905	chromatin interactions
ENSG00000134871	chromatin interactions
ENSG00000232814	chromatin interactions
ENSG00000153487	chromatin interactions
ENSG00000139832	chromatin interactions

Extended variants
information (count: 2111 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:2111 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562723707	chr13:111101538-111101539	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs139045554	chr13:111101562-111101563	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs575422299	chr13:111101573-111101574	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs149866287	chr13:111101618-111101619	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs185140807	chr13:111101621-111101622	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs554885864	chr13:111101659-111101660	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs370295796	chr13:111101666-111101667	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs369099859	chr13:111101670-111101671	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs373838673	chr13:111101671-111101672	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs34250092	chr13:111101672-111101673	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs397961294	chr13:111101677-111101678	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs572858850	chr13:111101684-111101685	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs7996798	chr13:111101752-111101753	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs144972936	chr13:111101809-111101810	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs116283860	chr13:111101821-111101822	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs560373970	chr13:111101899-111101900	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs111629941	chr13:111101912-111101913	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs184172324	chr13:111101916-111101917	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs56676181	chr13:111101931-111101932	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs371612569	chr13:111101944-111101945	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs75082326	chr13:111101952-111101953	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs567183898	chr13:111101959-111101960	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs528047048	chr13:111101965-111101966	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs140894681	chr13:111101974-111101975	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs571331921	chr13:111101975-111101976	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs377032034	chr13:111101980-111101981	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs538713557	chr13:111101987-111101988	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs188720127	chr13:111101989-111101990	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs76425569	chr13:111102042-111102043	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs267603755	chr13:111102058-111102059	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs536453426	chr13:111102095-111102096	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs74941798	chr13:111102126-111102127	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs368321322	chr13:111102155-111102156	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs200522141	chr13:111102162-111102163	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs117773239	chr13:111102163-111102164	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs576855740	chr13:111102164-111102165	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs371518953	chr13:111102176-111102177	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs34734302	chr13:111102183-111102184	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs563368015	chr13:111102188-111102189	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs140839386	chr13:111102191-111102192	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs183434089	chr13:111102195-111102196	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs187375586	chr13:111102214-111102215	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs75082893	chr13:111102215-111102216	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs9583496	chr13:111102220-111102221	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs528009532	chr13:111102221-111102222	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs552940340	chr13:111102225-111102226	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs564869100	chr13:111102235-111102236	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs542589043	chr13:111102237-111102238	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs111630827	chr13:111102258-111102259	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs74375323	chr13:111102263-111102264	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	17053054	CNVD
Gastric cancer	17908304	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Thyroid cancer	19087340	CNVD
abortions and stillbirths	19751515	CNVD
Acute myeloid leukemia	21251322	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Burkitt''s lymphoma	20823134	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Burkitt''s lymphoma	19759907	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Medulloblastoma	19270706	CNVD
Mental retardation	17124404	CNVD
Leukemia	18688285	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21858162	CNVD
Melanoma	17363583	CNVD
Developmental delay	21147756	CNVD
Breast cancer	21364760	CNVD
Colorectal cancer	21645411	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	16608533	CNVD
Glioblastoma multiforme	22286061	CNVD
Follicular lymphoma	20505157	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
abnormal development	18461090	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Malignant glioma	17146433	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Glioma	17123091	CNVD
Sudden cardiac death	19188705	CNVD
Breast cancer	20409316	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Neurocytoma	17123091	CNVD
Mantle cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1120 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111068000-111107000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:111070200-111108400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr13:111078200-111136800	Weak transcription	Colonic Mucosa	Colon
4	chr13:111083600-111110000	Weak transcription	Esophagus	oesophagus
5	chr13:111084200-111106400	Weak transcription	Liver	Liver
6	chr13:111086000-111105800	Strong transcription	Adipose Nuclei	Adipose
7	chr13:111088000-111107800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr13:111091000-111108400	Weak transcription	Brain Angular Gyrus	brain
9	chr13:111093800-111108200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr13:111094000-111102000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr13:111094000-111102200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr13:111094800-111108200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr13:111095000-111101600	Genic enhancers	HSMM	muscle
14	chr13:111095000-111108400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr13:111095800-111104600	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr13:111095800-111108200	Strong transcription	Fetal Intestine Small	intestine
17	chr13:111095800-111108400	Weak transcription	Brain Substantia Nigra	brain
18	chr13:111096400-111104400	Strong transcription	HUVEC	blood vessel
19	chr13:111096600-111105400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:111096800-111107200	Weak transcription	Fetal Heart	heart
21	chr13:111096800-111108400	Weak transcription	Brain Germinal Matrix	brain
22	chr13:111097000-111109000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:111097400-111103800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr13:111097400-111107000	Strong transcription	Left Ventricle	heart
25	chr13:111097600-111103600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:111097600-111103600	Strong transcription	Aorta	Aorta
27	chr13:111097600-111103600	Strong transcription	Lung	lung
28	chr13:111097600-111104200	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr13:111097600-111104600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr13:111097600-111107800	Strong transcription	Fetal Intestine Large	intestine
31	chr13:111097800-111104200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr13:111097800-111105400	Strong transcription	Right Ventricle	heart
33	chr13:111098200-111102400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr13:111098200-111103200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr13:111098200-111104600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:111098200-111108200	Weak transcription	Brain Anterior Caudate	brain
37	chr13:111098400-111101800	Enhancers	Placenta Amnion	Placenta Amnion
38	chr13:111098400-111103600	Strong transcription	Spleen	Spleen
39	chr13:111099000-111101600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr13:111099000-111123400	Strong transcription	Fetal Muscle Trunk	muscle
41	chr13:111099400-111102000	Genic enhancers	Stomach Smooth Muscle	stomach
42	chr13:111099600-111102200	Genic enhancers	Placenta	Placenta
43	chr13:111099600-111103000	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr13:111099600-111108400	Weak transcription	Fetal Brain Female	brain
45	chr13:111099800-111108400	Strong transcription	Fetal Stomach	stomach
46	chr13:111099800-111116400	Strong transcription	Fetal Muscle Leg	muscle
47	chr13:111100000-111101600	Enhancers	Rectal Smooth Muscle	rectum
48	chr13:111100000-111101800	Weak transcription	Gastric	stomach
49	chr13:111100000-111106200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr13:111100000-111120000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links