Variant report

Variant	nsv1045173
Chromosome Location	chr15:34501055-34596995
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2150)
CpG islands
(count:1467)
Chromatin interactive
region (count:106)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2150 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:34533629-34533925	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:34516962-34517340	HepG2	liver:	n/a	n/a
3	ARID3A	chr15:34516984-34517248	K562	blood:	n/a	n/a
4	ARID3A	chr15:34533609-34534005	K562	blood:	n/a	n/a
5	ARID3A	chr15:34540514-34540974	K562	blood:	n/a	n/a
6	ARID3A	chr15:34516110-34516171	K562	blood:	n/a	n/a
7	ARID3A	chr15:34501979-34502533	HepG2	liver:	n/a	n/a
8	ARID3A	chr15:34593477-34593641	HepG2	liver:	n/a	chr15:34593519-34593535
9	ATF1	chr15:34551902-34552161	K562	blood:	n/a	n/a
10	ATF1	chr15:34516847-34517424	K562	blood:	n/a	n/a
11	ATF1	chr15:34509910-34510142	K562	blood:	n/a	n/a
12	ATF1	chr15:34533663-34533893	K562	blood:	n/a	n/a
13	ATF1	chr15:34502158-34502558	K562	blood:	n/a	n/a
14	ATF2	chr15:34516945-34517385	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF2	chr15:34516865-34517432	GM12878	blood:	n/a	n/a
16	ATF2	chr15:34506269-34506795	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF2	chr15:34516909-34517413	GM12878	blood:	n/a	n/a
18	ATF3	chr15:34517041-34517369	GM12878	blood:	n/a	n/a
19	ATF3	chr15:34563758-34563992	K562	blood:	n/a	n/a
20	ATF3	chr15:34502082-34502543	A549	lung:	n/a	chr15:34502116-34502125
21	ATF3	chr15:34517037-34517400	K562	blood:	n/a	n/a
22	ATF3	chr15:34516985-34517441	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF3	chr15:34516867-34517484	A549	lung:	n/a	n/a
24	ATF3	chr15:34516771-34517488	A549	lung:	n/a	n/a
25	ATF3	chr15:34501676-34502593	A549	lung:	n/a	chr15:34502116-34502125 chr15:34502066-34502075
26	ATF3	chr15:34509774-34510172	K562	blood:	n/a	n/a
27	ATF3	chr15:34516883-34517350	K562	blood:	n/a	n/a
28	ATF3	chr15:34517072-34517257	GM12878	blood:	n/a	n/a
29	BACH1	chr15:34544776-34545265	K562	blood:	n/a	chr15:34544952-34544966
30	BACH1	chr15:34502343-34502446	K562	blood:	n/a	n/a
31	BACH1	chr15:34516879-34517306	K562	blood:	n/a	n/a
32	BACH1	chr15:34501775-34502581	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr15:34544883-34545148	H1-hESC	embryonic stem cell:	n/a	chr15:34544952-34544966
34	BACH1	chr15:34516852-34517583	H1-hESC	embryonic stem cell:	n/a	n/a
35	BACH1	chr15:34540389-34540814	K562	blood:	n/a	n/a
36	BATF	chr15:34516893-34517359	GM12878	blood:	n/a	n/a
37	BATF	chr15:34589603-34589889	GM12878	blood:	n/a	n/a
38	BATF	chr15:34509885-34510060	GM12878	blood:	n/a	chr15:34509990-34510001
39	BCL3	chr15:34516756-34517614	A549	lung:	n/a	chr15:34517582-34517589 chr15:34517208-34517217
40	BCL3	chr15:34516461-34517693	A549	lung:	n/a	chr15:34517582-34517589 chr15:34517208-34517217
41	BCLAF1	chr15:34501990-34502580	GM12878	blood:	n/a	chr15:34502106-34502119 chr15:34502335-34502344
42	BCLAF1	chr15:34516896-34517469	K562	blood:	n/a	chr15:34517208-34517217
43	BCLAF1	chr15:34501883-34502616	GM12878	blood:	n/a	chr15:34501927-34501940 chr15:34502106-34502119 chr15:34502335-34502344 chr15:34501970-34501979
44	BCLAF1	chr15:34516795-34517527	GM12878	blood:	n/a	chr15:34517208-34517217
45	BCLAF1	chr15:34516871-34517386	K562	blood:	n/a	chr15:34517208-34517217
46	BCLAF1	chr15:34516887-34517516	GM12878	blood:	n/a	chr15:34517208-34517217
47	BHLHE40	chr15:34516979-34517430	GM12878	blood:	n/a	n/a
48	BHLHE40	chr15:34577187-34577436	K562	blood:	n/a	n/a
49	BHLHE40	chr15:34540688-34540887	A549	lung:	n/a	n/a
50	BHLHE40	chr15:34501803-34502582	HepG2	liver:	n/a	chr15:34501925-34501941 chr15:34502109-34502125 chr15:34502106-34502122

(count:1467 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:34516640-34516690	GM12878	blood:	n/a
2	chr15:34503491-34503541	NHBE	bronchial:	n/a
3	chr15:34503491-34503541	ECC-1	luminal epithelium:	n/a
4	chr15:34516640-34516690	GM12878	blood:	n/a
5	chr15:34503491-34503541	NHBE	bronchial:	n/a
6	chr15:34503491-34503541	ECC-1	luminal epithelium:	n/a
7	chr15:34517320-34517370	T-47D	breast:	n/a
8	chr15:34517239-34517289	GM06990	blood:	n/a
9	chr15:34517074-34517124	PrEC	prostate:	n/a
10	chr15:34517834-34517884	AG09309	skin:	n/a
11	chr15:34516777-34516827	Caco-2	colon:	n/a
12	chr15:34517834-34517884	IMR90	lung:	fetal
13	chr15:34517074-34517124	Hela-S3	cervix:	n/a
14	chr15:34502580-34502630	SKMC	muscle:	n/a
15	chr15:34531380-34531430	AG10803	skin:	n/a
16	chr15:34516640-34516690	GM12892	blood:	n/a
17	chr15:34501904-34501954	HEEpiC	esophagus:	n/a
18	chr15:34502498-34502548	PANC-1	pancreas:	n/a
19	chr15:34502435-34502485	GM12892	blood:	n/a
20	chr15:34502525-34502575	HRCEpiC	kidney:	n/a
21	chr15:34516777-34516827	A549	lung:	n/a
22	chr15:34506071-34506121	IMR90	lung:	fetal
23	chr15:34502791-34502841	HEK293	kidney:	embryo
24	chr15:34502791-34502841	Hepatocyte	liver:	n/a
25	chr15:34502580-34502630	A549	lung:	n/a
26	chr15:34502494-34502544	HCPEpiC	choroid plexus:	n/a
27	chr15:34501719-34501769	PFSK-1	brain:	n/a
28	chr15:34503491-34503541	GM12892	blood:	n/a
29	chr15:34502418-34502468	SK-N-SH_RA	brain:	n/a
30	chr15:34517290-34517340	HPAEpiC	pulmonary alveolar:	n/a
31	chr15:34502993-34503043	Caco-2	colon:	n/a
32	chr15:34531380-34531430	MCF-7	breast:	n/a
33	chr15:34503491-34503541	AoSMC	blood vessel:	n/a
34	chr15:34516488-34516538	PrEC	prostate:	n/a
35	chr15:34516640-34516690	MCF-7	breast:	n/a
36	chr15:34522161-34522211	HMEC	breast:	n/a
37	chr15:34502435-34502485	PrEC	prostate:	n/a
38	chr15:34516777-34516827	AG09319	gingival:	n/a
39	chr15:34517320-34517370	AG04449	skin:	fetal
40	chr15:34502525-34502575	GM06990	blood:	n/a
41	chr15:34516640-34516690	HUVEC	blood vessel:	n/a
42	chr15:34517290-34517340	HCPEpiC	choroid plexus:	n/a
43	chr15:34516640-34516690	AG10803	skin:	n/a
44	chr15:34502580-34502630	RPTEC	kidney:	n/a
45	chr15:34502418-34502468	HNPCEpiC	eye:	n/a
46	chr15:34502525-34502575	ovcar-3	ovarian:	n/a
47	chr15:34516488-34516538	AG09309	skin:	n/a
48	chr15:34516777-34516827	BJ	skin:	n/a
49	chr15:34502205-34502255	Hepatocyte	liver:	n/a
50	chr15:34501719-34501769	NT2-D1	testis:	n/a

(count:106 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr15:34501646..34504292-chr15:34510886..34512885,2	K562	blood:
2	chr15:34507802..34510107-chr15:34514805..34516996,3	K562	blood:
3	chr15:34509090..34511526-chr15:34517586..34519946,2	MCF-7	breast:
4	chr15:34516899..34518721-chr15:34526418..34530376,3	MCF-7	breast:
5	chr15:34553058..34555521-chr15:34561938..34565007,3	K562	blood:
6	chr15:34502586..34504102-chr15:34521539..34524042,2	K562	blood:
7	chr15:34497680..34504001-chr15:34514973..34521212,14	K562	blood:
8	chr15:34392855..34396101-chr15:34515904..34518783,5	MCF-7	breast:
9	chr15:34568431..34570123-chr15:34573544..34575147,2	K562	blood:
10	chr15:34545498..34548076-chr15:34556727..34559376,2	K562	blood:
11	chr15:34590151..34592277-chr15:34605995..34607909,2	K562	blood:
12	chr15:34536523..34539176-chr15:34546816..34548491,2	K562	blood:
13	chr15:34516892..34518970-chr15:34542001..34544028,2	K562	blood:
14	chr15:34499795..34503886-chr15:34627014..34631557,6	K562	blood:
15	chr15:34491377..34494902-chr15:34500682..34503965,3	K562	blood:
16	chr15:34516899..34519877-chr15:34629611..34631706,2	K562	blood:
17	chr15:34519148..34521644-chr15:34659451..34661317,2	K562	blood:
18	chr15:34542486..34546422-chr15:34628917..34632698,3	K562	blood:
19	chr15:34516970..34518662-chr15:34536000..34538660,2	K562	blood:
20	chr15:34513565..34517614-chr15:34877827..34881077,3	K562	blood:
21	chr15:34498121..34503791-chr15:34514506..34519551,14	K562	blood:
22	chr15:34539135..34541437-chr15:34542575..34545570,3	K562	blood:
23	chr15:34540515..34542658-chr15:34544455..34546764,3	K562	blood:
24	chr15:34542868..34546239-chr15:34629699..34632698,3	K562	blood:
25	chr15:34536523..34539176-chr15:34546816..34548491,2	K562	blood:
26	chr15:34510862..34512619-chr15:34536843..34538458,2	K562	blood:
27	chr15:34516456..34519073-chr15:34530589..34533176,2	MCF-7	breast:
28	chr15:34526514..34531481-chr15:34531605..34533762,5	K562	blood:
29	chr15:34393498..34396367-chr15:34507556..34509302,2	K562	blood:
30	chr15:34514547..34516145-chr15:34521296..34523064,2	K562	blood:
31	chr15:34498121..34503791-chr15:34514506..34519551,14	K562	blood:
32	chr15:34499795..34502298-chr15:34629083..34632074,3	K562	blood:
33	chr15:34515223..34518649-chr15:34658701..34662221,4	K562	blood:
34	chr15:34507877..34510107-chr15:34514805..34516525,2	K562	blood:
35	chr15:34516456..34519073-chr15:34530589..34533176,2	MCF-7	breast:
36	chr15:34329770..34332450-chr15:34500868..34502911,3	K562	blood:
37	chr15:34501162..34503390-chr15:34507546..34510733,3	K562	blood:
38	chr15:34543302..34545799-chr15:34603176..34605145,2	K562	blood:
39	chr15:34561845..34564455-chr15:34565020..34567882,2	K562	blood:
40	chr1:144533750..144534472-chr15:34516659..34517532,2	Hela-S3	cervix:
41	chr15:34584866..34587109-chr15:34608710..34611023,2	K562	blood:
42	chr15:34502043..34502681-chr6:27100763..27101327,2	Hela-S3	cervix:
43	chr15:34568431..34570123-chr15:34573544..34575147,2	K562	blood:
44	chr15:34520473..34523178-chr15:34541838..34543586,2	K562	blood:
45	chr15:34505937..34506527-chr15:34659469..34660347,2	MCF-7	breast:
46	chr15:34402323..34402946-chr15:34504244..34504792,2	MCF-7	breast:
47	chr15:34500839..34504564-chr15:34529168..34532268,3	K562	blood:
48	chr15:34515761..34518007-chr15:34659442..34662221,3	K562	blood:
49	chr15:34553058..34555521-chr15:34561938..34565007,3	K562	blood:
50	chr15:34594934..34596711-chr15:34606010..34608946,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf29-1	chr15:34500718-34502270	NONHSAT041571

No data

Variant related genes	Relation type
ENSG00000259468	TF binding region
SLC12A6	TF binding region
KATNBL1	TF binding region
EMC4	TF binding region
ENSG00000259468	CpG island
SLC12A6	CpG island
KATNBL1	CpG island
EMC4	CpG island
ENSG00000113812	chromatin interactions
ENSG00000134153	chromatin interactions
ENSG00000196787	chromatin interactions
ENSG00000182117	chromatin interactions
ENSG00000184507	chromatin interactions
ENSG00000182405	chromatin interactions
ENSG00000255432	chromatin interactions
ENSG00000128463	chromatin interactions
ENSG00000201699	chromatin interactions
ENSG00000162194	chromatin interactions
ENSG00000215252	chromatin interactions
ENSG00000207091	chromatin interactions
ENSG00000259468	chromatin interactions
ENSG00000169857	chromatin interactions
ENSG00000176454	chromatin interactions
ENSG00000214756	chromatin interactions
ENSG00000140199	chromatin interactions
ENSG00000141198	chromatin interactions
ENSG00000134152	chromatin interactions

Extended variants
information (count: 3800 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:3800 , 50 per page) page: 1 2 3 4 5 6 7 ... 76

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550070008	chr15:34501061-34501062	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
2	rs76957575	chr15:34501066-34501067	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
3	rs76621016	chr15:34501079-34501080	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
4	rs536412429	chr15:34501088-34501089	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
5	rs571596900	chr15:34501094-34501095	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
6	rs538890052	chr15:34501116-34501117	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
7	rs149643513	chr15:34501146-34501147	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
8	rs75542238	chr15:34501147-34501148	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
9	rs565220818	chr15:34501188-34501189	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
10	rs76814112	chr15:34501285-34501286	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
11	rs554048075	chr15:34501415-34501416	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
12	rs144367286	chr15:34501418-34501419	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
13	rs562199245	chr15:34501478-34501479	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
14	rs529747837	chr15:34501508-34501509	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
15	rs548337942	chr15:34501548-34501549	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
16	rs571967721	chr15:34501578-34501579	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
17	rs8027499	chr15:34501587-34501588	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs552578579	chr15:34501598-34501599	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
19	rs79867880	chr15:34501607-34501608	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
20	rs371525703	chr15:34501610-34501611	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
21	rs555415922	chr15:34501621-34501622	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
22	rs74444992	chr15:34501647-34501648	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
23	rs188820196	chr15:34501655-34501656	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
24	rs373978081	chr15:34501678-34501679	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
25	rs7164891	chr15:34501766-34501767	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
26	rs554270275	chr15:34501768-34501769	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
27	rs572938057	chr15:34501850-34501851	Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	Overlapped CNVs	n/a
28	rs377096605	chr15:34501863-34501864	Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	Overlapped CNVs	n/a
29	rs6495619	chr15:34501871-34501872	Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs558575367	chr15:34501919-34501920	Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	Overlapped CNVs	n/a
31	rs6495620	chr15:34501958-34501959	Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs200480670	chr15:34501999-34502000	Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
33	rs543767298	chr15:34502022-34502023	Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
34	rs202170624	chr15:34502045-34502046	Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	12 gene(s)	Overlapped CNVs	n/a
35	rs555754247	chr15:34502053-34502054	Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	12 gene(s)	Overlapped CNVs	n/a
36	rs574165968	chr15:34502226-34502227	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
37	rs2705106	chr15:34502235-34502236	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
38	rs17525813	chr15:34502253-34502254	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
39	rs529020299	chr15:34502254-34502255	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
40	rs17525806	chr15:34502257-34502258	Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	Overlapped CNVs	n/a
41	rs116356981	chr15:34502275-34502276	Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
42	rs560224775	chr15:34502300-34502301	Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
43	rs6495621	chr15:34502311-34502312	Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs564721909	chr15:34502328-34502329	Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
45	rs532053031	chr15:34502348-34502349	Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
46	rs550171403	chr15:34502353-34502354	Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
47	rs568442198	chr15:34502378-34502379	Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
48	rs529342110	chr15:34502391-34502392	Active TSS Enhancers	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
49	rs17554484	chr15:34502406-34502407	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	13 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs566213511	chr15:34502452-34502453	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Abnormal corpus callosum	21572526	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Legius syndrome	19443465	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prader-willi syndrome	21504564	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:2443 , 50 per page) page: 1 2 3 4 5 6 7 ... 49

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
2	chr15:34477600-34501200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:34479400-34501600	Weak transcription	Lung	lung
4	chr15:34479600-34501800	Weak transcription	Spleen	Spleen
5	chr15:34486400-34501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:34492200-34501600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:34499800-34501200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr15:34499800-34502600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:34500200-34501200	Enhancers	Primary T cells from cord blood	blood
10	chr15:34500200-34501600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:34500200-34501600	Weak transcription	Pancreas	Pancrea
12	chr15:34500200-34502600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:34500400-34501200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr15:34500400-34501200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr15:34500400-34501200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:34500400-34501200	Enhancers	Thymus	Thymus
17	chr15:34500400-34501200	Flanking Active TSS	HUVEC	blood vessel
18	chr15:34500400-34501400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:34500400-34501400	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr15:34500400-34501400	Flanking Active TSS	Dnd41	blood
21	chr15:34500400-34501400	Flanking Active TSS	Hela-S3	cervix
22	chr15:34500400-34501600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:34500400-34502400	Active TSS	H1 Cell Line	embryonic stem cell
24	chr15:34500400-34502400	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr15:34500400-34502600	Active TSS	HSMM	muscle
26	chr15:34500400-34502600	Active TSS	HSMMtube	muscle
27	chr15:34500600-34501200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr15:34500600-34501200	Flanking Active TSS	A549	lung
29	chr15:34500600-34501400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr15:34500600-34501400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:34500600-34501600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:34500600-34501600	Weak transcription	Esophagus	oesophagus
33	chr15:34500600-34502200	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr15:34500600-34502200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:34500600-34502400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:34500600-34502400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:34500600-34502400	Active TSS	Fetal Muscle Leg	muscle
38	chr15:34500600-34502400	Active TSS	HMEC	breast
39	chr15:34500600-34502400	Active TSS	NHDF-Ad	bronchial
40	chr15:34500600-34502600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:34500600-34502600	Active TSS	Placenta	Placenta
42	chr15:34500600-34502600	Active TSS	GM12878-XiMat	blood
43	chr15:34500600-34502800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:34500800-34501200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr15:34500800-34501200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr15:34500800-34501200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:34500800-34501200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:34500800-34501200	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr15:34500800-34501200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr15:34500800-34501200	Flanking Active TSS	Fetal Brain Female	brain

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