Variant report

Variant	nsv1048905
Chromosome Location	chr10:50928727-51019190
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF3	chr10:50970194-50970515	K562	blood:	n/a	chr10:50970383-50970392 chr10:50970405-50970414 chr10:50970359-50970368 chr10:50970388-50970402 chr10:50970452-50970461 chr10:50970407-50970416
2	ATF3	chr10:50970300-50970494	GM12878	blood:	n/a	chr10:50970383-50970392 chr10:50970405-50970414 chr10:50970359-50970368 chr10:50970388-50970402 chr10:50970452-50970461 chr10:50970407-50970416
3	ATF3	chr10:50970168-50970483	GM12878	blood:	n/a	chr10:50970383-50970392 chr10:50970405-50970414 chr10:50970359-50970368 chr10:50970388-50970402 chr10:50970452-50970461 chr10:50970407-50970416
4	ATF3	chr10:50970265-50970481	H1-hESC	embryonic stem cell:	n/a	chr10:50970383-50970392 chr10:50970405-50970414 chr10:50970359-50970368 chr10:50970388-50970402 chr10:50970452-50970461 chr10:50970407-50970416
5	ATF3	chr10:50970240-50970504	HepG2	liver:	n/a	chr10:50970383-50970392 chr10:50970405-50970414 chr10:50970359-50970368 chr10:50970388-50970402 chr10:50970452-50970461 chr10:50970407-50970416
6	BACH1	chr10:50969856-50970751	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr10:50994459-50994580	K562	blood:	n/a	n/a
8	BACH1	chr10:50943326-50943356	H1-hESC	embryonic stem cell:	n/a	n/a
9	BCL3	chr10:50946090-50946405	GM12878	blood:	n/a	n/a
10	BHLHE40	chr10:51006621-51006821	GM12878	blood:	n/a	n/a
11	BHLHE40	chr10:50970158-50970718	K562	blood:	n/a	chr10:50970384-50970393 chr10:50970383-50970392 chr10:50970377-50970398 chr10:50970381-50970394 chr10:50970383-50970392 chr10:50970382-50970391 chr10:50970459-50970475
12	BHLHE40	chr10:50969895-50970583	HepG2	liver:	n/a	chr10:50970384-50970393 chr10:50970383-50970392 chr10:50969945-50969961 chr10:50970377-50970398 chr10:50970381-50970394 chr10:50970383-50970392 chr10:50970382-50970391 chr10:50970459-50970475
13	BHLHE40	chr10:50970196-50970579	GM12878	blood:	n/a	chr10:50970384-50970393 chr10:50970383-50970392 chr10:50970377-50970398 chr10:50970381-50970394 chr10:50970383-50970392 chr10:50970382-50970391 chr10:50970459-50970475
14	BRCA1	chr10:50969833-50969880	HepG2	liver:	n/a	n/a
15	CBX3	chr10:50970333-50970559	K562	blood:	n/a	n/a
16	CBX3	chr10:50970261-50970638	K562	blood:	n/a	n/a
17	CCNT2	chr10:50969942-50970636	K562	blood:	n/a	chr10:50970142-50970151
18	CEBPB	chr10:50999973-51000208	K562	blood:	n/a	n/a
19	CEBPB	chr10:51011648-51011749	K562	blood:	n/a	n/a
20	CEBPB	chr10:50942650-50943054	MCF-7	breast:	n/a	n/a
21	CEBPB	chr10:50940114-50940314	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPB	chr10:50975603-50975833	K562	blood:	n/a	n/a
23	CEBPZ	chr10:50935814-50935845	HepG2	liver:	n/a	n/a
24	CHD1	chr10:50991875-50991972	H1-hESC	embryonic stem cell:	n/a	n/a
25	CHD2	chr10:50976479-50977105	H1-hESC	embryonic stem cell:	n/a	chr10:50976499-50976509
26	CHD2	chr10:50970155-50970675	GM12878	blood:	n/a	n/a
27	CHD2	chr10:50970320-50970596	Hela-S3	cervix:	n/a	n/a
28	CHD2	chr10:50970415-50970474	K562	blood:	n/a	n/a
29	CHD2	chr10:50999189-50999492	HepG2	liver:	n/a	n/a
30	CHD2	chr10:50969853-50969902	HepG2	liver:	n/a	n/a
31	CHD2	chr10:50999166-50999554	K562	blood:	n/a	n/a
32	CHD2	chr10:50969685-50970108	H1-hESC	embryonic stem cell:	n/a	n/a
33	CREB1	chr10:50970063-50970750	K562	blood:	n/a	chr10:50970432-50970445
34	CREB1	chr10:50970287-50970613	A549	lung:	n/a	chr10:50970432-50970445
35	CREB1	chr10:50969854-50970691	HepG2	liver:	n/a	chr10:50970432-50970445
36	CREB1	chr10:50970200-50970750	HepG2	liver:	n/a	chr10:50970432-50970445
37	CREB1	chr10:50970217-50970715	ECC-1	luminal epithelium:	n/a	chr10:50970432-50970445
38	CREB1	chr10:50970090-50970763	K562	blood:	n/a	chr10:50970432-50970445
39	CREB1	chr10:50970193-50970777	H1-hESC	embryonic stem cell:	n/a	chr10:50970432-50970445
40	CREB1	chr10:50970157-50970700	H1-hESC	embryonic stem cell:	n/a	chr10:50970432-50970445
41	CREB1	chr10:50970222-50970579	A549	lung:	n/a	chr10:50970432-50970445
42	CREB1	chr10:50970154-50970663	GM12878	blood:	n/a	chr10:50970432-50970445
43	CTBP2	chr10:50969869-50970578	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTCF	chr10:50991859-50991926	A549	lung:	n/a	n/a
45	CTCF	chr10:50991807-50991997	MCF-7	breast:	n/a	n/a
46	CTCF	chr10:50953079-50953177	GM19240	blood:	n/a	n/a
47	CTCF	chr10:50953080-50953230	GM12869	blood:	n/a	n/a
48	CTCF	chr10:50953080-50953230	K562	blood:	n/a	n/a
49	CTCF	chr10:50953072-50953220	NHEK	skin:	n/a	n/a
50	CTCF	chr10:50953040-50953190	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:50970591-50970641	SAEC	small airway:	n/a
2	chr10:50977130-50977180	NHBE	bronchial:	n/a
3	chr10:50969997-50970047	H1-hESC	embryonic stem cell:	embryo
4	chr10:50970546-50970596	H1-hESC	embryonic stem cell:	embryo
5	chr10:50957749-50957799	AG10803	skin:	n/a
6	chr10:50977288-50977338	HAEpiC	amniotic membrane:	n/a
7	chr10:50970591-50970641	SAEC	small airway:	n/a
8	chr10:50977130-50977180	NHBE	bronchial:	n/a
9	chr10:50969997-50970047	H1-hESC	embryonic stem cell:	embryo
10	chr10:50970546-50970596	H1-hESC	embryonic stem cell:	embryo
11	chr10:50957749-50957799	AG10803	skin:	n/a
12	chr10:50977288-50977338	HAEpiC	amniotic membrane:	n/a
13	chr10:50970086-50970136	GM19239	blood:	n/a
14	chr10:50971607-50971657	HRE	kidney:	n/a
15	chr10:50970428-50970478	HCM	heart:	n/a
16	chr10:50976646-50976696	PANC-1	pancreas:	n/a
17	chr10:50975940-50975990	SAEC	small airway:	n/a
18	chr10:50970358-50970408	HCM	heart:	n/a
19	chr10:50970249-50970299	BE2_C	brain:	n/a
20	chr10:50969997-50970047	HCF	heart:	n/a
21	chr10:50976348-50976398	HPAEpiC	pulmonary alveolar:	n/a
22	chr10:50976348-50976398	ovcar-3	ovarian:	n/a
23	chr10:50977288-50977338	Hela-S3	cervix:	n/a
24	chr10:50967817-50967867	GM19239	blood:	n/a
25	chr10:50942972-50943022	GM12891	blood:	n/a
26	chr10:50970649-50970699	GM12891	blood:	n/a
27	chr10:50944500-50944550	HPAEpiC	pulmonary alveolar:	n/a
28	chr10:50976348-50976398	Hela-S3	cervix:	n/a
29	chr10:50970438-50970488	HPAEpiC	pulmonary alveolar:	n/a
30	chr10:50970428-50970478	T-47D	breast:	n/a
31	chr10:50970258-50970308	AG04449	skin:	fetal
32	chr10:50970575-50970625	Caco-2	colon:	n/a
33	chr10:50970863-50970913	GM12891	blood:	n/a
34	chr10:50970539-50970589	BJ	skin:	n/a
35	chr10:50979405-50979455	MCF-7	breast:	n/a
36	chr10:50944500-50944550	H1-hESC	embryonic stem cell:	embryo
37	chr10:50969719-50969769	AG04449	skin:	fetal
38	chr10:50977130-50977180	IMR90	lung:	fetal
39	chr10:50971607-50971657	HL-60	blood:	n/a
40	chr10:50977288-50977338	PrEC	prostate:	n/a
41	chr10:50970567-50970617	ECC-1	luminal epithelium:	n/a
42	chr10:50970649-50970699	MCF-7	breast:	n/a
43	chr10:50976571-50976621	MCF-7	breast:	n/a
44	chr10:50970086-50970136	PFSK-1	brain:	n/a
45	chr10:50970086-50970136	GM12891	blood:	n/a
46	chr10:50970546-50970596	HMEC	breast:	n/a
47	chr10:50975940-50975990	HEEpiC	esophagus:	n/a
48	chr10:50957749-50957799	BE2_C	brain:	n/a
49	chr10:50975940-50975990	AG09319	gingival:	n/a
50	chr10:50969719-50969769	NB4	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:51015171..51017712-chr10:51022529..51025032,3	K562	blood:
2	chr10:50953927..50957241-chr10:50965194..50969750,5	K562	blood:
3	chr10:50983400..50985274-chr10:50988322..50989889,2	K562	blood:
4	chr10:50954773..50957241-chr10:50965884..50969750,3	K562	blood:
5	chr10:50960158..50963082-chr10:50966138..50968051,2	K562	blood:
6	chr10:50967343..50969554-chr10:50974712..50977623,2	K562	blood:
7	chr10:50963177..50965287-chr10:50968017..50970003,2	K562	blood:
8	chr10:50957936..50960804-chr10:50966325..50969524,4	K562	blood:
9	chr10:50963177..50965287-chr10:50968017..50970003,2	K562	blood:
10	chr10:50953032..50956319-chr10:50959013..50960896,3	K562	blood:
11	chr10:50950802..50953710-chr10:50955807..50957980,3	K562	blood:
12	chr10:50970021..50971776-chr10:50987661..50990067,2	MCF-7	breast:
13	chr10:50802140..50803292-chr10:50991595..50992439,4	MCF-7	breast:
14	chr10:51015207..51019672-chr10:51022529..51027346,5	K562	blood:
15	chr10:50961582..50965287-chr10:50966138..50970003,4	K562	blood:
16	chr10:50983400..50985274-chr10:50988322..50989889,2	K562	blood:
17	chr10:50800816..50801717-chr10:50991472..50992349,4	MCF-7	breast:
18	chr10:50967343..50969554-chr10:50974712..50977623,2	K562	blood:

Variant related genes	Relation type
OGDHL	TF binding region
ENSG00000226389	TF binding region
ENSG00000229870	TF binding region
OGDHL	CpG island
ENSG00000226389	CpG island
ENSG00000229870	CpG island
ENSG00000229870	chromatin interactions
ENSG00000197444	chromatin interactions

Extended variants
information (count: 2959 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:2959 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs185586410	chr10:50928737-50928738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs148154079	chr10:50928746-50928747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs61846862	chr10:50928785-50928786	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs543456850	chr10:50928857-50928858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs190296664	chr10:50928884-50928885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs1258228	chr10:50928923-50928924	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs112830768	chr10:50928948-50928949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs559302997	chr10:50928949-50928950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs182498406	chr10:50928956-50928957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs564904811	chr10:50928999-50929000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs187980030	chr10:50929024-50929025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs191954177	chr10:50929051-50929052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs576726453	chr10:50929057-50929058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs546849312	chr10:50929067-50929068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs530620548	chr10:50929068-50929069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs73305352	chr10:50929099-50929100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs116965055	chr10:50929157-50929158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs370353662	chr10:50929275-50929276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs76282215	chr10:50929278-50929279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554417834	chr10:50929301-50929302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs566220996	chr10:50929303-50929304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs184207955	chr10:50929323-50929324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs558060875	chr10:50929362-50929363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs113427402	chr10:50929399-50929400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs140437066	chr10:50929400-50929401	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs549648510	chr10:50929407-50929408	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs144283747	chr10:50929413-50929414	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs12257757	chr10:50929461-50929462	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs541003580	chr10:50929467-50929468	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs370675860	chr10:50929508-50929509	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs577848201	chr10:50929550-50929551	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs375946817	chr10:50929560-50929561	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs375461727	chr10:50929646-50929647	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs147365287	chr10:50929680-50929681	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs139030414	chr10:50929700-50929701	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs530633264	chr10:50929727-50929728	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs549068266	chr10:50929748-50929749	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs191896923	chr10:50929759-50929760	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs528121913	chr10:50929760-50929761	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs546264526	chr10:50929770-50929771	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs149868065	chr10:50929774-50929775	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs113682618	chr10:50929783-50929784	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs184413576	chr10:50929817-50929818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs551959142	chr10:50929828-50929829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs569881251	chr10:50929874-50929875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs12250299	chr10:50929903-50929904	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs149102360	chr10:50929923-50929924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs573777473	chr10:50930043-50930044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs537808597	chr10:50930142-50930143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs560305034	chr10:50930194-50930195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Renal cell carcinoma	18765545	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Breast cancer	21785460	CNVD
Intellectual disability	21948486	CNVD
Schizophrenia	23813976	CNVD
Intellectual disability	22045946	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Autism	21948486	CNVD
cleft palate	21948486	CNVD
Encephalopathy	21948486	CNVD
Lung cancer	18438408	CNVD
Autism	22543975	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
skeletal anomalies	21948486	CNVD
speech delay	21948486	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Metanephric adenoma	20802469	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
XY gonadal dysgenesis	20685758	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	17440070	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:657 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50927400-50929400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr10:50927800-50940600	Weak transcription	Liver	Liver
3	chr10:50929400-50929600	ZNF genes & repeats	Aorta	Aorta
4	chr10:50929400-50929800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
5	chr10:50929800-50934400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:50934800-50935400	ZNF genes & repeats	Fetal Brain Female	brain
7	chr10:50934800-50944000	Weak transcription	Brain Angular Gyrus	brain
8	chr10:50935000-50935200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:50935200-50943000	Weak transcription	Brain Anterior Caudate	brain
10	chr10:50935200-50949600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:50935400-50943600	Weak transcription	Fetal Brain Female	brain
12	chr10:50939000-50941000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:50939000-50944200	Weak transcription	Pancreas	Pancrea
14	chr10:50939400-50943600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:50940000-50940200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:50940000-50942800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:50940200-50943200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:50940400-50949600	Weak transcription	Fetal Heart	heart
19	chr10:50940400-50953400	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:50940600-50966000	Strong transcription	Liver	Liver
21	chr10:50940800-50941600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr10:50941000-50941200	Enhancers	Spleen	Spleen
23	chr10:50941000-50941400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:50941000-50941400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:50941000-50942800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:50941000-50946400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:50941000-50951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:50941200-50941400	Enhancers	H9 Cell Line	embryonic stem cell
29	chr10:50941200-50943000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:50941200-50943800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:50941200-50945000	Weak transcription	Spleen	Spleen
32	chr10:50941200-50965400	Weak transcription	Brain Germinal Matrix	brain
33	chr10:50941400-50942000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr10:50941400-50942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:50941400-50942800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr10:50941600-50943200	Weak transcription	Ovary	ovary
37	chr10:50941600-50943400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:50941600-50943400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr10:50941800-50943400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:50941800-50943400	Weak transcription	Brain Substantia Nigra	brain
41	chr10:50941800-50943600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:50942000-50943400	Enhancers	Fetal Intestine Large	intestine
43	chr10:50942000-50946400	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr10:50942000-50949600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr10:50942400-50943200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:50942600-50943000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:50942600-50943200	Enhancers	NHEK	skin
48	chr10:50942800-50943000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:50942800-50943200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr10:50942800-50944400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links