Variant report
Variant | nsv1051750 |
---|---|
Chromosome Location | chr15:30444264-30933522 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3118)
- CpG islands (count:2808)
- Chromatin interactive region (count:3)
- LncRNA region (count:54)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr15:30917841-30918381 | K562 | blood: | n/a | n/a |
2 | ARID3A | chr15:30917819-30918297 | HepG2 | liver: | n/a | n/a |
3 | ATF1 | chr15:30917774-30918461 | K562 | blood: | n/a | n/a |
4 | ATF2 | chr15:30917709-30918426 | GM12878 | blood: | n/a | n/a |
5 | ATF2 | chr15:30917808-30918347 | H1-hESC | embryonic stem cell: | n/a | n/a |
6 | ATF2 | chr15:30917694-30918103 | GM12878 | blood: | n/a | n/a |
7 | ATF2 | chr15:30918103-30918425 | H1-hESC | embryonic stem cell: | n/a | n/a |
8 | ATF3 | chr15:30917703-30918445 | A549 | lung: | n/a | n/a |
9 | BATF | chr15:30832414-30833216 | GM12878 | blood: | n/a | chr15:30833063-30833074 |
10 | BATF | chr15:30793866-30794121 | GM12878 | blood: | n/a | n/a |
11 | BATF | chr15:30626382-30626790 | GM12878 | blood: | n/a | chr15:30626595-30626606 |
12 | BATF | chr15:30765290-30765504 | GM12878 | blood: | n/a | n/a |
13 | BATF | chr15:30763589-30764924 | GM12878 | blood: | n/a | n/a |
14 | BATF | chr15:30678661-30679029 | GM12878 | blood: | n/a | chr15:30678848-30678858 chr15:30678844-30678854 |
15 | BATF | chr15:30832413-30833670 | GM12878 | blood: | n/a | chr15:30833063-30833074 |
16 | BATF | chr15:30717393-30718193 | GM12878 | blood: | n/a | n/a |
17 | BATF | chr15:30459001-30459247 | GM12878 | blood: | n/a | n/a |
18 | BATF | chr15:30871690-30872015 | GM12878 | blood: | n/a | chr15:30871822-30871833 chr15:30871827-30871837 chr15:30871823-30871833 |
19 | BATF | chr15:30720885-30721174 | GM12878 | blood: | n/a | n/a |
20 | BATF | chr15:30793879-30794120 | GM12878 | blood: | n/a | n/a |
21 | BATF | chr15:30691171-30691739 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr15:30458984-30459268 | GM12878 | blood: | n/a | n/a |
23 | BATF | chr15:30678631-30678956 | GM12878 | blood: | n/a | chr15:30678848-30678858 chr15:30678844-30678854 |
24 | BATF | chr15:30871617-30871985 | GM12878 | blood: | n/a | chr15:30871822-30871833 chr15:30871827-30871837 chr15:30871823-30871833 |
25 | BATF | chr15:30763776-30764872 | GM12878 | blood: | n/a | n/a |
26 | BATF | chr15:30765283-30765578 | GM12878 | blood: | n/a | n/a |
27 | BATF | chr15:30829434-30829723 | GM12878 | blood: | n/a | n/a |
28 | BATF | chr15:30917720-30918566 | GM12878 | blood: | n/a | n/a |
29 | BATF | chr15:30880957-30881265 | GM12878 | blood: | n/a | n/a |
30 | BATF | chr15:30881037-30881316 | GM12878 | blood: | n/a | n/a |
31 | BATF | chr15:30763002-30763213 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr15:30858799-30859444 | GM12878 | blood: | n/a | n/a |
33 | BATF | chr15:30626371-30626674 | GM12878 | blood: | n/a | chr15:30626595-30626606 |
34 | BATF | chr15:30716939-30717383 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr15:30717407-30718307 | GM12878 | blood: | n/a | n/a |
36 | BCL11A | chr15:30859004-30859344 | GM12878 | blood: | n/a | chr15:30859230-30859243 |
37 | BCL11A | chr15:30871637-30871932 | GM12878 | blood: | n/a | chr15:30871825-30871834 chr15:30871780-30871789 |
38 | BCL11A | chr15:30626396-30626697 | GM12878 | blood: | n/a | n/a |
39 | BCL11A | chr15:30717095-30717386 | GM12878 | blood: | n/a | n/a |
40 | BCL11A | chr15:30717383-30717989 | GM12878 | blood: | n/a | n/a |
41 | BCL11A | chr15:30465220-30465511 | GM12878 | blood: | n/a | n/a |
42 | BCL11A | chr15:30678698-30678949 | GM12878 | blood: | n/a | chr15:30678847-30678856 chr15:30678892-30678901 |
43 | BCL11A | chr15:30763746-30764847 | GM12878 | blood: | n/a | n/a |
44 | BCL11A | chr15:30858936-30859213 | GM12878 | blood: | n/a | n/a |
45 | BCL11A | chr15:30832593-30833514 | GM12878 | blood: | n/a | n/a |
46 | BCL11A | chr15:30469390-30469696 | GM12878 | blood: | n/a | n/a |
47 | BCL11A | chr15:30832618-30833226 | GM12878 | blood: | n/a | n/a |
48 | BCL11A | chr15:30678714-30679009 | GM12878 | blood: | n/a | chr15:30678847-30678856 chr15:30678892-30678901 |
49 | BCL11A | chr15:30765257-30765493 | GM12878 | blood: | n/a | n/a |
50 | BCL11A | chr15:30692208-30692390 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:30918328-30918378 | MCF10A-Er-Src | breast: | n/a |
2 | chr15:30918595-30918645 | HRCEpiC | kidney: | n/a |
3 | chr15:30918328-30918378 | MCF10A-Er-Src | breast: | n/a |
4 | chr15:30918595-30918645 | HRCEpiC | kidney: | n/a |
5 | chr15:30930499-30930549 | HAEpiC | amniotic membrane: | n/a |
6 | chr15:30482157-30482207 | SAEC | small airway: | n/a |
7 | chr15:30483519-30483569 | AG04449 | skin: | fetal |
8 | chr15:30919014-30919064 | HUVEC | blood vessel: | n/a |
9 | chr15:30666736-30666786 | NT2-D1 | testis: | n/a |
10 | chr15:30919014-30919064 | SK-N-SH_RA | brain: | n/a |
11 | chr15:30919014-30919064 | T-47D | breast: | n/a |
12 | chr15:30920627-30920677 | K562 | blood: | n/a |
13 | chr15:30484753-30484803 | ECC-1 | luminal epithelium: | n/a |
14 | chr15:30896060-30896110 | BJ | skin: | n/a |
15 | chr15:30918313-30918363 | HRPEpiC | eye: | n/a |
16 | chr15:30515844-30515894 | MCF-7 | breast: | n/a |
17 | chr15:30654880-30654930 | LNCaP | prostate: | n/a |
18 | chr15:30487914-30487964 | NT2-D1 | testis: | n/a |
19 | chr15:30918328-30918378 | HIPEpiC | eye: | n/a |
20 | chr15:30844060-30844110 | GM12892 | blood: | n/a |
21 | chr15:30483647-30483697 | Hela-S3 | cervix: | n/a |
22 | chr15:30518064-30518114 | AG04450 | lung: | fetal |
23 | chr15:30917918-30917968 | CMK | blood: | n/a |
24 | chr15:30896060-30896110 | NHDF-neo | bronchial: | n/a |
25 | chr15:30484033-30484083 | GM12878 | blood: | n/a |
26 | chr15:30918328-30918378 | HCF | heart: | n/a |
27 | chr15:30918328-30918378 | GM12891 | blood: | n/a |
28 | chr15:30763484-30763534 | HMEC | breast: | n/a |
29 | chr15:30515844-30515894 | GM12891 | blood: | n/a |
30 | chr15:30483519-30483569 | HRPEpiC | eye: | n/a |
31 | chr15:30486767-30486817 | HIPEpiC | eye: | n/a |
32 | chr15:30520018-30520068 | GM12891 | blood: | n/a |
33 | chr15:30654880-30654930 | ECC-1 | luminal epithelium: | n/a |
34 | chr15:30865191-30865241 | T-47D | breast: | n/a |
35 | chr15:30930499-30930549 | GM06990 | blood: | n/a |
36 | chr15:30486767-30486817 | AG10803 | skin: | n/a |
37 | chr15:30511386-30511436 | AG09309 | skin: | n/a |
38 | chr15:30515162-30515212 | AG04450 | lung: | fetal |
39 | chr15:30763487-30763537 | AG09319 | gingival: | n/a |
40 | chr15:30918065-30918115 | U87 | brain: | n/a |
41 | chr15:30816232-30816282 | GM12892 | blood: | n/a |
42 | chr15:30865200-30865250 | AG09309 | skin: | n/a |
43 | chr15:30917958-30918008 | ECC-1 | luminal epithelium: | n/a |
44 | chr15:30919014-30919064 | PANC-1 | pancreas: | n/a |
45 | chr15:30685198-30685248 | HRE | kidney: | n/a |
46 | chr15:30489014-30489064 | Caco-2 | colon: | n/a |
47 | chr15:30520018-30520068 | CMK | blood: | n/a |
48 | chr15:30865200-30865250 | ProgFib | skin: | n/a |
49 | chr15:30919014-30919064 | HNPCEpiC | eye: | n/a |
50 | chr15:30516422-30516472 | Hepatocyte | liver: | n/a |
(count:3 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-AC026150.9.1-3 | chr15:30780166-30782516 | ENSG00000270055.1 |
2 | lnc-CHRNA7-2 | chr15:30871491-30871615 | NONHSAT140224 |
3 | lnc-AC026150.9.1-1 | chr15:30832296-30832742 | ENSG00000260693.1 |
4 | lnc-RP11-382B18.2.1-1 | chr15:30917254-30917976 | ENSG00000247728.2 |
5 | lnc-RP11-382B18.2.1-1 | chr15:30909201-30909447 | ENSG00000247728.2 |
6 | lnc-RP5-1086D14.3.1-1 | chr15:30488239-30488317 | ENSG00000225930.2 |
7 | lnc-CHRFAM7A-1 | chr15:30471212-30471332 | ENSG00000259906.1 |
8 | lnc-CHRFAM7A-3 | chr15:30697514-30697792 | NONHSAT041354 |
9 | lnc-RP5-1086D14.3.1-1 | chr15:30491478-30491534 | ENSG00000225930.3 |
10 | lnc-AC026150.9.1-5 | chr15:30702037-30703662 | NONHSAT041356 |
11 | lnc-CHRNA7-2 | chr15:30878081-30878127 | NONHSAT041368 |
12 | lnc-AC026150.9.1-1 | chr15:30836768-30836863 | ENSG00000260693.1 |
13 | lnc-CHRFAM7A-1 | chr15:30471079-30472146 | ENSG00000259906.1 |
14 | lnc-RP11-382B18.2.1-3 | chr15:30899898-30900396 | ENSG00000270016.1 |
15 | lnc-RP11-382B18.2.1-2 | chr15:30673906-30674079 | NONHSAT041347 |
16 | lnc-RP5-1086D14.3.1-1 | chr15:30502620-30504471 | ENSG00000225930.2 |
17 | lnc-RP5-1086D14.3.1-1 | chr15:30491478-30491534 | ENSG00000225930.2 |
18 | lnc-ARHGAP11B-1 | chr15:30916697-30916815 | NONHSAT041376 |
19 | lnc-RP5-1086D14.3.1-1 | chr15:30502620-30506743 | ENSG00000225930.3 |
20 | lnc-AC026150.9.1-1 | chr15:30838015-30838172 | ENSG00000260693.1 |
21 | lnc-RP5-1086D14.3.1-1 | chr15:30502611-30503009 | ENSG00000225930.2 |
22 | lnc-CHRNA7-2 | chr15:30888863-30888941 | NONHSAT140224 |
23 | lnc-RP11-382B18.2.1-2 | chr15:30679087-30679190 | NONHSAT041347 |
24 | lnc-CHRNA7-2 | chr15:30865088-30865219 | NONHSAT041367 |
25 | lnc-CHRNA7-2 | chr15:30871491-30871615 | NONHSAT041367 |
26 | lnc-CHRNA7-2 | chr15:30892305-30892911 | NONHSAT041366 |
27 | lnc-RP11-382B18.2.1-2 | chr15:30675247-30675585 | NONHSAT041348 |
28 | lnc-CHRNA7-2 | chr15:30865172-30865219 | NONHSAT140224 |
29 | lnc-RP5-1086D14.3.1-1 | chr15:30488239-30488317 | ENSG00000225930.3 |
30 | lnc-CHRFAM7A-1 | chr15:30462766-30462831 | ENSG00000259906.1 |
31 | lnc-CHRNA7-2 | chr15:30888863-30888941 | NONHSAT041366 |
32 | lnc-RP11-382B18.2.1-1 | chr15:30857143-30857384 | ENSG00000247728 |
33 | lnc-ARHGAP11B-1 | chr15:30916926-30917019 | NONHSAT041376 |
34 | lnc-RP11-382B18.2.1-2 | chr15:30672556-30672602 | NONHSAT041347 |
35 | lnc-ARHGAP11B-1 | chr15:30917557-30918469 | NONHSAT041376 |
36 | lnc-GOLGA8H-1 | chr15:30909161-30909952 | ENSG00000269930.1 |
37 | lnc-CHRNA7-2 | chr15:30865172-30865219 | NONHSAT041368 |
38 | lnc-RP11-382B18.2.1-1 | chr15:30917254-30917976 | ENSG00000247728 |
39 | lnc-AC026150.9.1-4 | chr15:30749372-30751192 | ucscGeneNc_uc001zhb_2 |
40 | lnc-CHRNA7-2 | chr15:30888863-30888941 | NONHSAT041368 |
41 | lnc-CHRNA7-2 | chr15:30892305-30892900 | NONHSAT041368 |
42 | lnc-CHRFAM7A-1 | chr15:30462912-30462975 | ENSG00000259906.1 |
43 | lnc-RP11-382B18.2.1-2 | chr15:30679066-30679190 | NONHSAT041348 |
44 | lnc-CHRNA7-2 | chr15:30871491-30871615 | NONHSAT041368 |
45 | lnc-CHRNA7-2 | chr15:30865172-30865219 | NONHSAT041366 |
46 | lnc-CHRNA7-2 | chr15:30871491-30871615 | NONHSAT041366 |
47 | lnc-ARHGAP11B-2 | chr15:30904916-30905194 | NONHSAT041372 |
48 | lnc-CHRNA7-2 | chr15:30892305-30892850 | NONHSAT140224 |
49 | lnc-RP11-382B18.2.1-2 | chr15:30675522-30675585 | NONHSAT041347 |
50 | lnc-CHRFAM7A-2 | chr15:30649969-30650976 | ENSG00000270173.1 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000221593 | TF binding region |
ENSG00000207430 | TF binding region |
RN7SL196P | TF binding region |
RN7SL628P | TF binding region |
GOLGA8H | TF binding region |
ARHGAP11B | TF binding region |
RNU6-17P | TF binding region |
ENSG00000247728 | TF binding region |
ENSG00000238519 | TF binding region |
ENSG00000260693 | TF binding region |
GOLGA8R | TF binding region |
RN7SL796P | TF binding region |
DNM1P50 | TF binding region |
ENSG00000238783 | TF binding region |
ENSG00000263070 | TF binding region |
ENSG00000225930 | TF binding region |
ENSG00000260784 | TF binding region |
ENSG00000270173 | TF binding region |
ENSG00000252602 | TF binding region |
ENSG00000271333 | TF binding region |
ENSG00000215302 | TF binding region |
CHRFAM7A | TF binding region |
ENSG00000261747 | TF binding region |
ENSG00000270016 | TF binding region |
ENSG00000221723 | TF binding region |
ULK4P2 | TF binding region |
DNM1P30 | TF binding region |
ENSG00000269930 | TF binding region |
ENSG00000259906 | TF binding region |
ENSG00000270055 | TF binding region |
ENSG00000270955 | TF binding region |
ENSG00000221358 | TF binding region |
ENSG00000259993 | TF binding region |
GOLGA8Q | TF binding region |
ENSG00000221593 | CpG island |
ENSG00000207430 | CpG island |
RN7SL196P | CpG island |
RN7SL628P | CpG island |
GOLGA8H | CpG island |
ARHGAP11B | CpG island |
RNU6-17P | CpG island |
ENSG00000247728 | CpG island |
ENSG00000238519 | CpG island |
ENSG00000260693 | CpG island |
GOLGA8R | CpG island |
RN7SL796P | CpG island |
DNM1P50 | CpG island |
ENSG00000238783 | CpG island |
ENSG00000263070 | CpG island |
ENSG00000225930 | CpG island |
ENSG00000260784 | CpG island |
ENSG00000270173 | CpG island |
ENSG00000252602 | CpG island |
ENSG00000271333 | CpG island |
ENSG00000215302 | CpG island |
CHRFAM7A | CpG island |
ENSG00000261747 | CpG island |
ENSG00000270016 | CpG island |
ENSG00000221723 | CpG island |
ULK4P2 | CpG island |
DNM1P30 | CpG island |
ENSG00000269930 | CpG island |
ENSG00000259906 | CpG island |
ENSG00000270055 | CpG island |
ENSG00000270955 | CpG island |
ENSG00000221358 | CpG island |
ENSG00000259993 | CpG island |
GOLGA8Q | CpG island |
ENSG00000244952 | chromatin interactions |
ENSG00000262728 | chromatin interactions |
ENSG00000198826 | chromatin interactions |
ENSG00000135916 | chromatin interactions |
PRKAB2 | miRNA target sites |
TGFB2 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs536948056 | chr15:30446836-30446837 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
2 | rs559428327 | chr15:30446842-30446843 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
3 | rs368956199 | chr15:30446846-30446847 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
4 | rs556518900 | chr15:30446856-30446857 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
5 | rs529739394 | chr15:30446871-30446872 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
6 | rs538382524 | chr15:30446877-30446878 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
7 | rs558705722 | chr15:30446890-30446891 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
8 | rs572134773 | chr15:30446910-30446911 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
9 | rs529220141 | chr15:30455216-30455217 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs147891250 | chr15:30455225-30455226 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs569107387 | chr15:30455234-30455235 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs181361420 | chr15:30455237-30455238 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs371759050 | chr15:30455241-30455242 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs537662962 | chr15:30455280-30455281 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs150131515 | chr15:30455289-30455290 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs376235771 | chr15:30455307-30455308 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs570961131 | chr15:30455362-30455363 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs539936921 | chr15:30455392-30455393 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs553444790 | chr15:30455411-30455412 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs2554217 | chr15:30455419-30455420 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs143466504 | chr15:30455440-30455441 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs137887506 | chr15:30455441-30455442 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs62017027 | chr15:30455461-30455462 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs555800690 | chr15:30455504-30455505 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs575853491 | chr15:30455513-30455514 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs544482211 | chr15:30455578-30455579 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs564334030 | chr15:30455584-30455585 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs369630568 | chr15:30455597-30455598 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs200438703 | chr15:30455652-30455653 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs577356346 | chr15:30455657-30455658 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs540250296 | chr15:30455900-30455901 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs62017028 | chr15:30455911-30455912 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs112340202 | chr15:30456193-30456194 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs539922539 | chr15:30456351-30456352 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs559743506 | chr15:30456374-30456375 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs113654331 | chr15:30456384-30456385 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs528905007 | chr15:30456413-30456414 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs548932257 | chr15:30456573-30456574 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs562652331 | chr15:30456662-30456663 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs531590628 | chr15:30456673-30456674 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs551649107 | chr15:30456768-30456769 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs571458816 | chr15:30456773-30456774 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs62017029 | chr15:30456796-30456797 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs201492866 | chr15:30457025-30457026 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs562573560 | chr15:30457086-30457087 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs199547275 | chr15:30457088-30457089 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs547136420 | chr15:30457136-30457137 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs566922526 | chr15:30457529-30457530 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs535489791 | chr15:30457530-30457531 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs555686065 | chr15:30457569-30457570 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Ovarian cancer | 21720365 | CNVD |
HDAC8 | 0 | CNVD |
NIPBL | 0 | CNVD |
RAD21 | 0 | CNVD |
SMC1A | 0 | CNVD |
SMC3 | 0 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Schizophrenia | 19415332 | CNVD |
Breast cancer | 22522925 | CNVD |
Autism | 22495311 | CNVD |
Wilms tumour | 21544195 | CNVD |
Prader-willi syndrome | 21504564 | CNVD |
The inv dup or idic syndrome | 19019226 | CNVD |
Prader-willi syndrome | 21233802 | CNVD |
Angelman syndrome | 16617304 | CNVD |
Angelman syndrome | 20970697 | CNVD |
Autism | 22958593 | CNVD |
Prader-willi syndrome | 16617304 | CNVD |
Prader-willi syndrome | 18923514 | CNVD |
Prader-willi syndrome | 20970697 | CNVD |
Angelman syndrome | 16183798 | CNVD |
Angelman syndrome | 18923514 | CNVD |
Prader-willi syndrome | 22241247 | CNVD |
Epilepsy | 20970697 | CNVD |
Autism | 20970697 | CNVD |
Autism | 19935738 | CNVD |
Autism | 22930557 | CNVD |
Autism | 19966786 | CNVD |
Autism | 18923514 | CNVD |
Autism | 18925931 | CNVD |
Autism | 18835857 | CNVD |
Prader-willi syndrome | 18835857 | CNVD |
Prader-willi syndrome | 22152151 | CNVD |
Autism | 22241247 | CNVD |
15q-syndrome | 21725066 | CNVD |
Prader-willi syndrome | 21503198 | CNVD |
Autism | 21956041 | CNVD |
Prader-willi syndrome | 16760730 | CNVD |
Prader-willi syndrome | 22470819 | CNVD |
prenatal diagnosis | 20453657 | CNVD |
Prader-willi syndrome | 17867985 | CNVD |
Angelman syndrome | 21072004 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
cataract | 16735990 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Medulloblastoma | 21979893 | CNVD |
spastic paraplegia with thinning of corpus callosum | 19105190 | CNVD |
Schizophrenia | 21324950 | CNVD |
Astrocytoma | 17387387 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Disease | 21824424 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Prader-willi syndrome | 18781185 | CNVD |
Melanoma | 18172304 | CNVD |
Autism | 17322880 | CNVD |
Prader-willi syndrome | 19329560 | CNVD |
Autism | 17999366 | CNVD |
Autism | 17901113 | CNVD |
Neurodevelopmental disorder | 17015230 | CNVD |
Autism | 18414403 | CNVD |
Neurocytoma | 17123091 | CNVD |
Mental retardation | 18923513 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Gastric cancer | 17167181 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Intellectual disability | 22102821 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Breast cancer | 21509527 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Breast cancer | 17133270 | CNVD |
Prostate cancer | 16573809 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21858162 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 21785460 | CNVD |
Prostate cancer | 18632612 | CNVD |
Angelman syndrome | 18787571 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Abnormal corpus callosum | 21572526 | CNVD |
idiopathic generalized epilepsy | 19843651 | CNVD |
Neuropsychiatric disorder | 20506139 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Autism | 19204725 | CNVD |
Schizophrenia | 19204725 | CNVD |
Schizophrenia | 19149910 | CNVD |
Schizophrenia | 20967226 | CNVD |
Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
Epilepsy | 22499536 | CNVD |
Schizophrenia | 22499536 | CNVD |
Schizophrenia | 18923514 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Schizophrenia | 20587603 | CNVD |
Schizophrenia | 22958593 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 21956041 | CNVD |
Schizophrenia | 20970697 | CNVD |
Mental retardation | 19951919 | CNVD |
Mental retardation | 21956041 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Mental retardation | 21062444 | CNVD |
Autism | 21269290 | CNVD |
Intellectual disability | 21269290 | CNVD |
Schizophrenia | 21269290 | CNVD |
Colorectal cancer | 21128281 | CNVD |
Epilepsy | 19289393 | CNVD |
Epilepsy | 20643615 | CNVD |
Mental retardation | 19289393 | CNVD |
Mental retardation | 20152051 | CNVD |
Schizophrenia | 19289393 | CNVD |
dysmorphic features | 19289393 | CNVD |
idiopathic epilepsies | 19341504 | CNVD |
idiopathic generalized epilepsy | 19592580 | CNVD |
idiopathic generalized epilepsy | 19136953 | CNVD |
Autism | 22094647 | CNVD |
Developmental delay | 19898479 | CNVD |
Mental retardation | 18278044 | CNVD |
Mental retardation | 19898479 | CNVD |
Prader-willi syndrome | 18854863 | CNVD |
Schizophrenia | 19855392 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Epilepsy | 20502679 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Intellectual disability | 21811512 | CNVD |
Glioma | 20126413 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:30455200-30455400 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr15:30455200-30455600 | Enhancers | Primary Natural Killer cells fromperipheralblood | blood |
3 | chr15:30455200-30455600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
4 | chr15:30455200-30455600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
5 | chr15:30455400-30465000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
6 | chr15:30455600-30456000 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
7 | chr15:30455600-30456000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
8 | chr15:30455600-30456000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
9 | chr15:30456000-30457000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
10 | chr15:30456000-30457000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
11 | chr15:30456000-30457800 | Enhancers | Primary Natural Killer cells fromperipheralblood | blood |
12 | chr15:30456400-30456800 | Enhancers | Primary T helper memory cells from peripheral blood 1 | blood |
13 | chr15:30456400-30457000 | Enhancers | Primary T cells fromperipheralblood | blood |
14 | chr15:30456400-30457000 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
15 | chr15:30456400-30457000 | Enhancers | Primary T helper cells fromperipheralblood | blood |
16 | chr15:30456600-30457000 | Enhancers | Primary T regulatory cells fromperipheralblood | blood |
17 | chr15:30458800-30459200 | Enhancers | Pancreas | Pancrea |
18 | chr15:30459200-30465000 | Weak transcription | Pancreas | Pancrea |
19 | chr15:30463800-30465000 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
20 | chr15:30464800-30465000 | Weak transcription | Spleen | Spleen |
21 | chr15:30465000-30465200 | Flanking Active TSS | H1 Derived Mesenchymal Stem Cells | ES cell derived |
22 | chr15:30465000-30465200 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
23 | chr15:30465000-30465200 | Enhancers | Primary T helper naive cells fromperipheralblood | blood |
24 | chr15:30465000-30465200 | Enhancers | Primary T killer memory cells from peripheral blood | blood |
25 | chr15:30465000-30465400 | Bivalent Enhancer | Brain Anterior Caudate | brain |
26 | chr15:30465000-30465400 | Enhancers | Placenta Amnion | Placenta Amnion |
27 | chr15:30465000-30465400 | Transcr. at gene 5' and 3' | Spleen | Spleen |
28 | chr15:30465000-30465600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
29 | chr15:30465000-30465600 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
30 | chr15:30465000-30465600 | ZNF genes & repeats | H9 Cell Line | embryonic stem cell |
31 | chr15:30465000-30465600 | ZNF genes & repeats | iPS DF 6.9 Cell Line | embryonic stem cell |
32 | chr15:30465000-30465600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
33 | chr15:30465000-30465600 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
34 | chr15:30465000-30465600 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
35 | chr15:30465000-30465600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
36 | chr15:30465000-30465600 | Enhancers | Esophagus | oesophagus |
37 | chr15:30465000-30465600 | ZNF genes & repeats | Fetal Kidney | kidney |
38 | chr15:30465000-30465600 | ZNF genes & repeats | Gastric | stomach |
39 | chr15:30465000-30465600 | ZNF genes & repeats | Lung | lung |
40 | chr15:30465000-30465600 | Transcr. at gene 5' and 3' | Pancreas | Pancrea |
41 | chr15:30465200-30465400 | Bivalent Enhancer | Primary T cells fromperipheralblood | blood |
42 | chr15:30465200-30465400 | Active TSS | Fetal Brain Male | brain |
43 | chr15:30465200-30465400 | Flanking Bivalent TSS/Enh | Fetal Lung | lung |
44 | chr15:30465200-30465400 | Bivalent Enhancer | Skeletal Muscle Male | skeletal muscle |
45 | chr15:30465200-30465400 | Bivalent/Poised TSS | Stomach Mucosa | stomach |
46 | chr15:30465200-30465400 | ZNF genes & repeats | NHLF | lung |
47 | chr15:30465200-30465600 | Transcr. at gene 5' and 3' | H1 Derived Mesenchymal Stem Cells | ES cell derived |
48 | chr15:30465200-30465600 | Enhancers | Primary B cells from peripheral blood | blood |
49 | chr15:30465200-30465600 | Enhancers | Primary T cells from cord blood | blood |
50 | chr15:30465200-30465600 | Enhancers | Primary hematopoietic stem cells | blood |