Variant report

Variant	nsv1052528
Chromosome Location	chr15:99736977-99874210
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2087)
CpG islands
(count:1281)
Chromatin interactive
region (count:88)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2087 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:99813243-99813446	K562	blood:	n/a	n/a
2	ARID3A	chr15:99790922-99791899	HepG2	liver:	n/a	n/a
3	ARID3A	chr15:99826755-99826938	HepG2	liver:	n/a	n/a
4	ARID3A	chr15:99846228-99846789	HepG2	liver:	n/a	chr15:99846306-99846322
5	ARID3A	chr15:99808749-99809017	HepG2	liver:	n/a	n/a
6	ARID3A	chr15:99852295-99853142	K562	blood:	n/a	n/a
7	ARID3A	chr15:99797553-99797840	HepG2	liver:	n/a	n/a
8	ARID3A	chr15:99791850-99792363	K562	blood:	n/a	n/a
9	ATF1	chr15:99813211-99813447	K562	blood:	n/a	n/a
10	ATF1	chr15:99864437-99864834	K562	blood:	n/a	n/a
11	ATF1	chr15:99852443-99852972	K562	blood:	n/a	n/a
12	ATF1	chr15:99850971-99851292	K562	blood:	n/a	n/a
13	ATF1	chr15:99829160-99829174	K562	blood:	n/a	n/a
14	ATF1	chr15:99798217-99798327	K562	blood:	n/a	n/a
15	ATF1	chr15:99791001-99791616	K562	blood:	n/a	n/a
16	ATF2	chr15:99790825-99791768	GM12878	blood:	n/a	n/a
17	ATF2	chr15:99791049-99791639	GM12878	blood:	n/a	n/a
18	ATF2	chr15:99791342-99791717	H1-hESC	embryonic stem cell:	n/a	n/a
19	ATF2	chr15:99864341-99864893	GM12878	blood:	n/a	n/a
20	ATF2	chr15:99779778-99780446	GM12878	blood:	n/a	n/a
21	ATF2	chr15:99779751-99780513	GM12878	blood:	n/a	n/a
22	ATF2	chr15:99791241-99791627	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr15:99864284-99864957	GM12878	blood:	n/a	n/a
24	ATF3	chr15:99790726-99791552	A549	lung:	n/a	n/a
25	ATF3	chr15:99863947-99864628	A549	lung:	n/a	n/a
26	ATF3	chr15:99864085-99864956	A549	lung:	n/a	n/a
27	ATF3	chr15:99864139-99865019	HCT-116	colon:	n/a	n/a
28	BACH1	chr15:99792247-99792257	K562	blood:	n/a	n/a
29	BACH1	chr15:99791217-99792087	H1-hESC	embryonic stem cell:	n/a	n/a
30	BACH1	chr15:99856134-99856158	H1-hESC	embryonic stem cell:	n/a	n/a
31	BATF	chr15:99864228-99864489	GM12878	blood:	n/a	chr15:99864364-99864375
32	BCL11A	chr15:99780073-99780318	GM12878	blood:	n/a	n/a
33	BCL3	chr15:99863946-99865300	A549	lung:	n/a	n/a
34	BCL3	chr15:99790815-99791656	A549	lung:	n/a	n/a
35	BCL3	chr15:99790928-99791629	A549	lung:	n/a	n/a
36	BCL3	chr15:99864031-99864882	A549	lung:	n/a	n/a
37	BCLAF1	chr15:99790674-99791521	GM12878	blood:	n/a	n/a
38	BCLAF1	chr15:99864343-99864871	GM12878	blood:	n/a	n/a
39	BCLAF1	chr15:99790744-99791594	GM12878	blood:	n/a	n/a
40	BCLAF1	chr15:99826592-99827059	GM12878	blood:	n/a	n/a
41	BCLAF1	chr15:99753403-99753813	GM12878	blood:	n/a	n/a
42	BHLHE40	chr15:99852526-99852941	K562	blood:	n/a	n/a
43	BHLHE40	chr15:99790978-99792068	K562	blood:	n/a	chr15:99791430-99791446
44	BHLHE40	chr15:99850957-99851553	K562	blood:	n/a	n/a
45	BHLHE40	chr15:99752808-99753008	K562	blood:	n/a	n/a
46	BHLHE40	chr15:99791121-99791990	GM12878	blood:	n/a	chr15:99791430-99791446
47	BHLHE40	chr15:99813351-99813378	K562	blood:	n/a	n/a
48	BRCA1	chr15:99766180-99766214	GM12878	blood:	n/a	n/a
49	BRCA1	chr15:99791110-99791739	H1-hESC	embryonic stem cell:	n/a	n/a
50	BRCA1	chr15:99864143-99864788	Hela-S3	cervix:	n/a	n/a

(count:1281 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:99789622-99789672	H1-hESC	embryonic stem cell:	embryo
2	chr15:99791546-99791596	NHBE	bronchial:	n/a
3	chr15:99789637-99789687	A549	lung:	n/a
4	chr15:99789777-99789827	NT2-D1	testis:	n/a
5	chr15:99792144-99792194	HAEpiC	amniotic membrane:	n/a
6	chr15:99836575-99836625	H1-hESC	embryonic stem cell:	embryo
7	chr15:99864059-99864109	HepG2	liver:	n/a
8	chr15:99792144-99792194	HRPEpiC	eye:	n/a
9	chr15:99789622-99789672	ProgFib	skin:	n/a
10	chr15:99752192-99752242	GM12878	blood:	n/a
11	chr15:99789777-99789827	SK-N-MC	brain:	n/a
12	chr15:99836575-99836625	CMK	blood:	n/a
13	chr15:99795399-99795449	NHDF-neo	bronchial:	n/a
14	chr15:99791546-99791596	SKMC	muscle:	n/a
15	chr15:99836575-99836625	MCF10A-Er-Src	breast:	n/a
16	chr15:99795399-99795449	SKMC	muscle:	n/a
17	chr15:99792144-99792194	RPTEC	kidney:	n/a
18	chr15:99791546-99791596	SK-N-SH_RA	brain:	n/a
19	chr15:99864059-99864109	HAEpiC	amniotic membrane:	n/a
20	chr15:99789622-99789672	HUVEC	blood vessel:	n/a
21	chr15:99789777-99789827	HCT-116	colon:	n/a
22	chr15:99791508-99791558	GM12878	blood:	n/a
23	chr15:99791508-99791558	HEK293	kidney:	embryo
24	chr15:99791109-99791159	NB4	blood:	n/a
25	chr15:99836575-99836625	AG04450	lung:	fetal
26	chr15:99791485-99791535	NB4	blood:	n/a
27	chr15:99791496-99791546	LNCaP	prostate:	n/a
28	chr15:99789855-99789905	HRE	kidney:	n/a
29	chr15:99791546-99791596	HCT-116	colon:	n/a
30	chr15:99792144-99792194	NHBE	bronchial:	n/a
31	chr15:99791485-99791535	NHBE	bronchial:	n/a
32	chr15:99752192-99752242	HNPCEpiC	eye:	n/a
33	chr15:99791569-99791619	HCPEpiC	choroid plexus:	n/a
34	chr15:99789637-99789687	GM12892	blood:	n/a
35	chr15:99791546-99791596	HCM	heart:	n/a
36	chr15:99792144-99792194	AG04450	lung:	fetal
37	chr15:99791336-99791386	HRCEpiC	kidney:	n/a
38	chr15:99752192-99752242	GM12892	blood:	n/a
39	chr15:99789637-99789687	Caco-2	colon:	n/a
40	chr15:99791508-99791558	PFSK-1	brain:	n/a
41	chr15:99791496-99791546	A549	lung:	n/a
42	chr15:99864059-99864109	HEEpiC	esophagus:	n/a
43	chr15:99789637-99789687	PrEC	prostate:	n/a
44	chr15:99795399-99795449	HMEC	breast:	n/a
45	chr15:99791508-99791558	HAEpiC	amniotic membrane:	n/a
46	chr15:99791485-99791535	NH-A	brain:	n/a
47	chr15:99789777-99789827	CMK	blood:	n/a
48	chr15:99791336-99791386	SKMC	muscle:	n/a
49	chr15:99789637-99789687	LNCaP	prostate:	n/a
50	chr15:99791496-99791546	AG10803	skin:	n/a

(count:88 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr15:99753444..99755273-chr15:99777428..99780031,2	MCF-7	breast:
2	chr15:99771022..99772727-chr15:99790064..99791793,2	MCF-7	breast:
3	chr15:99804185..99806716-chr15:99808711..99810346,2	MCF-7	breast:
4	chr15:99647521..99649996-chr15:99837108..99838795,2	MCF-7	breast:
5	chr15:99737190..99739756-chr15:99764410..99766560,2	K562	blood:
6	chr15:99856565..99859133-chr15:99884132..99886600,2	MCF-7	breast:
7	chr15:99812878..99813498-chr15:100243248..100244206,2	MCF-7	breast:
8	chr15:99846693..99847599-chr2:219395068..219395705,2	MCF-7	breast:
9	chr15:99856389..99859314-chr15:99863031..99866195,3	MCF-7	breast:
10	chr15:99753612..99755555-chr15:99762228..99764358,2	MCF-7	breast:
11	chr15:45003258..45003898-chr15:99790871..99791766,2	NB4	blood:
12	chr15:99790234..99792055-chr2:242088635..242090209,2	MCF-7	breast:
13	chr15:99788127..99791108-chr15:99792243..99793962,2	K562	blood:
14	chr15:99754641..99757075-chr15:99789848..99791775,2	MCF-7	breast:
15	chr15:99846877..99849995-chr15:99854925..99857345,3	MCF-7	breast:
16	chr15:99643948..99646697-chr15:99752022..99754887,3	MCF-7	breast:
17	chr15:99756826..99758963-chr15:99762396..99763956,2	MCF-7	breast:
18	chr15:99640426..99641482-chr15:99753072..99754322,8	K562	blood:
19	chr15:99745619..99748122-chr15:99752648..99755055,2	MCF-7	breast:
20	chr15:99710562..99711289-chr15:99753177..99753882,2	MCF-7	breast:
21	chr15:99826798..99828339-chr15:100272977..100274878,2	MCF-7	breast:
22	chr15:99790531..99793156-chr15:100244093..100247016,2	MCF-7	breast:
23	chr15:99753444..99755273-chr15:99777428..99780031,2	MCF-7	breast:
24	chr15:99737190..99739756-chr15:99764410..99766560,2	K562	blood:
25	chr15:99762009..99765655-chr15:99790108..99792308,4	MCF-7	breast:
26	chr15:99845791..99847734-chr15:99849228..99852501,3	K562	blood:
27	chr15:99784175..99787630-chr15:99790166..99793752,4	K562	blood:
28	chr15:99813220..99813808-chr15:100269972..100270827,2	K562	blood:
29	chr15:99813197..99813935-chr20:33427071..33428071,2	MCF-7	breast:
30	chr15:99776030..99778548-chr15:99795228..99797882,2	MCF-7	breast:
31	chr15:99845791..99847734-chr15:99849228..99852501,3	K562	blood:
32	chr15:99812901..99813825-chr15:100295748..100296397,4	K562	blood:
33	chr1:37939783..37940413-chr15:99790980..99791738,2	Hela-S3	cervix:
34	chr15:99791130..99791720-chr17:41465594..41466467,2	Hela-S3	cervix:
35	chr15:99812628..99814196-chr15:100244285..100245248,5	K562	blood:
36	chr15:99762009..99765655-chr15:99790108..99792308,4	MCF-7	breast:
37	chr15:99755485..99757956-chr15:99767073..99768603,2	MCF-7	breast:
38	chr15:99777487..99779238-chr15:99790707..99792491,2	MCF-7	breast:
39	chr15:99761212..99763784-chr15:99766463..99769175,2	MCF-7	breast:
40	chr15:99643946..99646615-chr15:99751647..99755247,3	MCF-7	breast:
41	chr15:99644709..99645655-chr15:99753141..99754071,8	MCF-7	breast:
42	chr15:99856389..99859314-chr15:99863031..99866195,3	MCF-7	breast:
43	chr15:99644031..99646464-chr15:99746513..99749494,3	MCF-7	breast:
44	chr15:99773963..99776603-chr15:99777623..99779591,2	MCF-7	breast:
45	chr15:99791782..99793591-chr15:99794191..99796456,2	K562	blood:
46	chr15:99639243..99641590-chr15:99753533..99755577,2	MCF-7	breast:
47	chr15:99791320..99794083-chr15:99831622..99834139,2	K562	blood:
48	chr15:99644725..99645445-chr15:99748047..99748658,2	MCF-7	breast:
49	chr15:99644580..99645568-chr15:99753087..99754058,10	MCF-7	breast:
50	chr15:99644709..99645388-chr15:99791744..99792284,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MEF2A-7	chr15:99847900-99848768	l_1246_chr15:99847899-99851046_liver
2	lnc-MEF2A-7	chr15:99848897-99851046	l_1246_chr15:99847899-99851046_liver

No data

Variant related genes	Relation type
ENSG00000264771	TF binding region
ENSG00000268730	TF binding region
LRRC28	TF binding region
ENSG00000259257	TF binding region
TTC23	TF binding region
HSP90B2P	TF binding region
HNRNPA1P62	TF binding region
ENSG00000264771	CpG island
ENSG00000268730	CpG island
LRRC28	CpG island
ENSG00000259257	CpG island
TTC23	CpG island
HSP90B2P	CpG island
HNRNPA1P62	CpG island
ENSG00000184825	chromatin interactions
ENSG00000229474	chromatin interactions
ENSG00000182253	chromatin interactions
ENSG00000233621	chromatin interactions
ENSG00000263053	chromatin interactions
ENSG00000115687	chromatin interactions
ENSG00000166710	chromatin interactions
ENSG00000103852	chromatin interactions
ENSG00000197903	chromatin interactions
ENSG00000068305	chromatin interactions
ENSG00000240972	chromatin interactions
ENSG00000134297	chromatin interactions
ENSG00000259228	chromatin interactions
ENSG00000264771	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000183060	chromatin interactions
ENSG00000168904	chromatin interactions
ENSG00000259706	chromatin interactions
ENSG00000163874	chromatin interactions
ENSG00000115685	chromatin interactions
ENSG00000221511	chromatin interactions
ENSG00000259475	chromatin interactions
ENSG00000177119	chromatin interactions

Extended variants
information (count: 5222 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:5222 , 50 per page) page: 1 2 3 4 5 6 7 ... 105

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527365654	chr15:99737053-99737054	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs548842899	chr15:99737064-99737065	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs189038144	chr15:99737077-99737078	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs542759541	chr15:99737100-99737101	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs143831833	chr15:99737120-99737121	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs556719892	chr15:99737183-99737184	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs148134463	chr15:99737248-99737249	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs539381615	chr15:99737256-99737257	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs12899112	chr15:99737301-99737302	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs78509681	chr15:99737307-99737308	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs554205289	chr15:99737325-99737326	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs572500198	chr15:99737346-99737347	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs529519545	chr15:99737359-99737360	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs373746811	chr15:99737377-99737378	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs181602530	chr15:99737393-99737394	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs556802191	chr15:99737401-99737402	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs575264778	chr15:99737404-99737405	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs141062679	chr15:99737426-99737427	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs562351224	chr15:99737433-99737434	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs577504904	chr15:99737442-99737443	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs544932848	chr15:99737453-99737454	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs150321391	chr15:99737456-99737457	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs138007295	chr15:99737462-99737463	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs386787177	chr15:99737463-99737464	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs548985605	chr15:99737464-99737465	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs560775761	chr15:99737482-99737483	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs71403431	chr15:99737493-99737494	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs28554146	chr15:99737499-99737500	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs28584682	chr15:99737505-99737506	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs113008813	chr15:99737509-99737510	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs545563614	chr15:99737513-99737514	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186595790	chr15:99737520-99737521	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs189878346	chr15:99737522-99737523	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571916019	chr15:99737526-99737527	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs59545422	chr15:99737528-99737529	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs548142967	chr15:99737542-99737543	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566391419	chr15:99737550-99737551	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs536221419	chr15:99737554-99737555	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs554949907	chr15:99737578-99737579	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs576417006	chr15:99737586-99737587	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs138680734	chr15:99737592-99737593	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs181099455	chr15:99737597-99737598	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs577451593	chr15:99737602-99737603	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs117926259	chr15:99737603-99737604	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs559990024	chr15:99737608-99737609	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs572308272	chr15:99737630-99737631	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs117801118	chr15:99737650-99737651	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs573870774	chr15:99737660-99737661	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs560979965	chr15:99737669-99737670	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs530881421	chr15:99737680-99737681	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	20811773	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	21364760	CNVD
Breast cancer	20409316	CNVD
Emphysema	19352772	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Prostate cancer	18632612	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	17142309	CNVD
Aortic dissecting aneurysms	22263138	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	21215367	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:2855 , 50 per page) page: 1 2 3 4 5 6 7 ... 58

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99673200-99789400	Weak transcription	Small Intestine	intestine
2	chr15:99697000-99756400	Weak transcription	Stomach Mucosa	stomach
3	chr15:99711600-99738600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:99715600-99738600	Weak transcription	Hela-S3	cervix
5	chr15:99717400-99761000	Weak transcription	Gastric	stomach
6	chr15:99717800-99758000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:99718200-99749200	Weak transcription	HUVEC	blood vessel
8	chr15:99721200-99738600	Weak transcription	HSMMtube	muscle
9	chr15:99721200-99758400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:99721800-99742400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:99722000-99758400	Weak transcription	Right Ventricle	heart
12	chr15:99722200-99739800	Weak transcription	NHLF	lung
13	chr15:99722400-99752200	Weak transcription	Osteobl	bone
14	chr15:99722600-99757600	Weak transcription	Psoas Muscle	Psoas
15	chr15:99722800-99738200	Weak transcription	HSMM	muscle
16	chr15:99723000-99749000	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:99723200-99738400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:99724400-99769600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:99726000-99749400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:99726400-99742600	Weak transcription	Brain Anterior Caudate	brain
21	chr15:99726600-99758200	Weak transcription	HMEC	breast
22	chr15:99728400-99760000	Weak transcription	NHDF-Ad	bronchial
23	chr15:99730400-99739000	Weak transcription	Left Ventricle	heart
24	chr15:99731000-99740200	Strong transcription	Fetal Lung	lung
25	chr15:99731800-99739800	Weak transcription	HepG2	liver
26	chr15:99732800-99739200	Weak transcription	Placenta	Placenta
27	chr15:99732800-99758000	Weak transcription	Spleen	Spleen
28	chr15:99732800-99761000	Weak transcription	Lung	lung
29	chr15:99733000-99738400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:99733000-99739800	Weak transcription	Brain Substantia Nigra	brain
31	chr15:99733000-99740200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:99733000-99758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:99733000-99760400	Weak transcription	Esophagus	oesophagus
34	chr15:99733200-99738400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:99733200-99740600	Strong transcription	Fetal Stomach	stomach
36	chr15:99733200-99742400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr15:99733200-99751800	Weak transcription	A549	lung
38	chr15:99733200-99756800	Weak transcription	Aorta	Aorta
39	chr15:99733200-99758200	Weak transcription	Colonic Mucosa	Colon
40	chr15:99733400-99738200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:99733400-99738400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr15:99733400-99738400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:99733400-99739400	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:99733400-99739800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:99733400-99742600	Weak transcription	Brain Hippocampus Middle	brain
46	chr15:99733400-99749000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr15:99733400-99752800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:99733400-99787400	Weak transcription	NHEK	skin
49	chr15:99733600-99737200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:99733600-99738400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links