Variant report

Variant	nsv1053702
Chromosome Location	chr13:64212705-64242857
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PCDH20-9	chr13:64241750-64241972	XLOC_010643
2	lnc-PCDH20-9	chr13:64241814-64241972	XLOC_010643
3	lnc-PCDH20-9	chr13:64241815-64241966	XLOC_010643

Variant related genes	Relation type
DUSP2	miRNA target sites

Extended variants
information (count: 283 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:283 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576918878	chr13:64217419-64217420	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs571345923	chr13:64217448-64217449	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs527404447	chr13:64217459-64217460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs533821722	chr13:64217460-64217461	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs553504291	chr13:64217502-64217503	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs920981	chr13:64217523-64217524	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs564156195	chr13:64217543-64217544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs532796577	chr13:64217564-64217565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs112620761	chr13:64217570-64217571	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs569573279	chr13:64217582-64217583	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs190200913	chr13:64217597-64217598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs548578610	chr13:64217602-64217603	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs2810859	chr13:64217636-64217637	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs183844615	chr13:64217638-64217639	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs149148669	chr13:64217672-64217673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs2810860	chr13:64217688-64217689	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs2590930	chr13:64217694-64217695	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs143229173	chr13:64217701-64217702	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs9539831	chr13:64217719-64217720	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs186542731	chr13:64217750-64217751	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs148067546	chr13:64217798-64217799	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs559874129	chr13:64217802-64217803	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs140867893	chr13:64217803-64217804	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs192330076	chr13:64217826-64217827	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs564214589	chr13:64217844-64217845	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs17088658	chr13:64217882-64217883	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs114952190	chr13:64217920-64217921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs563035828	chr13:64217931-64217932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs530442933	chr13:64217934-64217935	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs548626842	chr13:64217978-64217979	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs544376923	chr13:64218005-64218006	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs75246393	chr13:64218013-64218014	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs527723780	chr13:64218098-64218099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs552108369	chr13:64218108-64218109	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs578043785	chr13:64218128-64218129	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs540691252	chr13:64218198-64218199	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs570623381	chr13:64218199-64218200	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs560286982	chr13:64218202-64218203	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs537917794	chr13:64218305-64218306	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs77883922	chr13:64218310-64218311	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs529245162	chr13:64218316-64218317	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs145988126	chr13:64218336-64218337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs535622580	chr13:64218363-64218364	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs2587601	chr13:64218393-64218394	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs576679370	chr13:64223221-64223222	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs146067680	chr13:64223226-64223227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs367959298	chr13:64223233-64223234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs549381065	chr13:64223240-64223241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs562310284	chr13:64223264-64223265	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs185239130	chr13:64223267-64223268	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	17245344	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Merkel cell carcinoma	19020549	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Colorectal cancer	16774939	CNVD
Adenoid cystic carcinoma	17372589	CNVD
abnormal development	18461090	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64217400-64218400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:64223200-64224400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:64223600-64224200	Enhancers	Brain Substantia Nigra	brain
4	chr13:64223800-64224200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:64224000-64224400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr13:64224400-64227200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:64227200-64227400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:64233000-64233600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:64235400-64235600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:64242800-64243600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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