Variant report

Variant	nsv1057390
Chromosome Location	chr19:43003323-43173028
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2595)
CpG islands
(count:672)
Chromatin interactive
region (count:39)
LncRNA
region (count:25)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2595 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:43071213-43071350	K562	blood:	n/a	n/a
2	ARID3A	chr19:43043390-43043643	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:43033404-43033697	HepG2	liver:	n/a	n/a
4	ARID3A	chr19:43032733-43033111	HepG2	liver:	n/a	n/a
5	ARID3A	chr19:43061956-43062073	HepG2	liver:	n/a	n/a
6	ATF1	chr19:43010783-43010973	K562	blood:	n/a	n/a
7	ATF1	chr19:43071854-43072090	K562	blood:	n/a	n/a
8	ATF2	chr19:43016945-43017555	GM12878	blood:	n/a	n/a
9	ATF2	chr19:43017006-43017450	GM12878	blood:	n/a	n/a
10	BACH1	chr19:43139260-43139326	K562	blood:	n/a	n/a
11	BACH1	chr19:43100672-43101041	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr19:43082922-43083098	K562	blood:	n/a	n/a
13	BACH1	chr19:43033574-43033649	K562	blood:	n/a	n/a
14	BACH1	chr19:43059655-43059806	H1-hESC	embryonic stem cell:	n/a	n/a
15	BACH1	chr19:43073712-43073803	K562	blood:	n/a	n/a
16	BATF	chr19:43017239-43017523	GM12878	blood:	n/a	n/a
17	BATF	chr19:43132976-43133178	GM12878	blood:	n/a	chr19:43133094-43133104
18	BATF	chr19:43019663-43019875	GM12878	blood:	n/a	n/a
19	BATF	chr19:43016857-43017236	GM12878	blood:	n/a	n/a
20	BCLAF1	chr19:43033389-43033746	GM12878	blood:	n/a	n/a
21	BCLAF1	chr19:43016927-43017552	GM12878	blood:	n/a	n/a
22	BCLAF1	chr19:43017085-43017455	GM12878	blood:	n/a	n/a
23	BHLHE40	chr19:43067557-43067815	GM12878	blood:	n/a	n/a
24	BHLHE40	chr19:43033374-43033739	GM12878	blood:	n/a	n/a
25	BHLHE40	chr19:43071184-43071299	K562	blood:	n/a	n/a
26	BHLHE40	chr19:43106732-43106880	GM12878	blood:	n/a	n/a
27	BHLHE40	chr19:43032441-43032956	GM12878	blood:	n/a	n/a
28	BHLHE40	chr19:43064834-43065281	K562	blood:	n/a	n/a
29	BHLHE40	chr19:43100628-43100974	K562	blood:	n/a	n/a
30	BHLHE40	chr19:43110839-43111090	K562	blood:	n/a	n/a
31	BHLHE40	chr19:43013074-43013437	GM12878	blood:	n/a	n/a
32	BHLHE40	chr19:43071110-43071282	HepG2	liver:	n/a	n/a
33	BHLHE40	chr19:43033456-43033732	K562	blood:	n/a	n/a
34	BHLHE40	chr19:43016039-43017543	GM12878	blood:	n/a	n/a
35	BHLHE40	chr19:43064904-43065169	GM12878	blood:	n/a	n/a
36	BHLHE40	chr19:43139176-43139401	K562	blood:	n/a	n/a
37	BHLHE40	chr19:43110883-43111176	GM12878	blood:	n/a	n/a
38	BHLHE40	chr19:43064896-43065270	HepG2	liver:	n/a	n/a
39	BHLHE40	chr19:43138971-43139294	HepG2	liver:	n/a	n/a
40	BRCA1	chr19:43111388-43111484	GM12878	blood:	n/a	n/a
41	BRCA1	chr19:43168346-43168356	GM12878	blood:	n/a	n/a
42	BRCA1	chr19:43033495-43033697	HepG2	liver:	n/a	n/a
43	CBX3	chr19:43156238-43156476	K562	blood:	n/a	n/a
44	CBX3	chr19:43020999-43021348	HCT-116	colon:	n/a	n/a
45	CEBPB	chr19:43156174-43156554	A549	lung:	n/a	chr19:43156349-43156360
46	CEBPB	chr19:43076011-43076056	HepG2	liver:	n/a	chr19:43076033-43076044
47	CEBPB	chr19:43097919-43098273	A549	lung:	n/a	chr19:43098079-43098092 chr19:43098079-43098090
48	CEBPB	chr19:43045819-43046087	H1-hESC	embryonic stem cell:	n/a	n/a
49	CEBPB	chr19:43139178-43139417	Hela-S3	cervix:	n/a	n/a
50	CEBPB	chr19:43152306-43152361	IMR90	lung:	n/a	n/a

(count:672 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:43099046-43099096	SK-N-SH	brain:	n/a
2	chr19:43099046-43099096	SK-N-SH	brain:	n/a
3	chr19:43099845-43099895	HRE	kidney:	n/a
4	chr19:43099795-43099845	HCT-116	colon:	n/a
5	chr19:43099845-43099895	HRCEpiC	kidney:	n/a
6	chr19:43033362-43033412	GM06990	blood:	n/a
7	chr19:43033362-43033412	Jurkat	blood:	n/a
8	chr19:43012255-43012305	IMR90	lung:	fetal
9	chr19:43085416-43085466	Caco-2	colon:	n/a
10	chr19:43099845-43099895	HMEC	breast:	n/a
11	chr19:43099795-43099845	ovcar-3	ovarian:	n/a
12	chr19:43099046-43099096	LNCaP	prostate:	n/a
13	chr19:43099845-43099895	CMK	blood:	n/a
14	chr19:43032683-43032733	K562	blood:	n/a
15	chr19:43099046-43099096	HPAEpiC	pulmonary alveolar:	n/a
16	chr19:43085416-43085466	AG04449	skin:	fetal
17	chr19:43099124-43099174	Jurkat	blood:	n/a
18	chr19:43085416-43085466	Hepatocyte	liver:	n/a
19	chr19:43032587-43032637	HCM	heart:	n/a
20	chr19:43099124-43099174	MCF10A-Er-Src	breast:	n/a
21	chr19:43033362-43033412	Hela-S3	cervix:	n/a
22	chr19:43085416-43085466	AoSMC	blood vessel:	n/a
23	chr19:43099124-43099174	NB4	blood:	n/a
24	chr19:43099795-43099845	AG04449	skin:	fetal
25	chr19:43099482-43099532	CMK	blood:	n/a
26	chr19:43032683-43032733	ProgFib	skin:	n/a
27	chr19:43033801-43033851	MCF-7	breast:	n/a
28	chr19:43085416-43085466	HL-60	blood:	n/a
29	chr19:43032683-43032733	Jurkat	blood:	n/a
30	chr19:43085416-43085466	SAEC	small airway:	n/a
31	chr19:43085416-43085466	SK-N-MC	brain:	n/a
32	chr19:43032683-43032733	ovcar-3	ovarian:	n/a
33	chr19:43099845-43099895	HCPEpiC	choroid plexus:	n/a
34	chr19:43099046-43099096	NHDF-neo	bronchial:	n/a
35	chr19:43032587-43032637	K562	blood:	n/a
36	chr19:43032683-43032733	NT2-D1	testis:	n/a
37	chr19:43033362-43033412	IMR90	lung:	fetal
38	chr19:43033801-43033851	HEK293	kidney:	embryo
39	chr19:43033801-43033851	HCM	heart:	n/a
40	chr19:43099482-43099532	GM12891	blood:	n/a
41	chr19:43033362-43033412	HRPEpiC	eye:	n/a
42	chr19:43099482-43099532	HEEpiC	esophagus:	n/a
43	chr19:43099795-43099845	A549	lung:	n/a
44	chr19:43099046-43099096	GM12891	blood:	n/a
45	chr19:43099482-43099532	LNCaP	prostate:	n/a
46	chr19:43033362-43033412	HPAEpiC	pulmonary alveolar:	n/a
47	chr19:43012255-43012305	A549	lung:	n/a
48	chr19:43099482-43099532	BJ	skin:	n/a
49	chr19:43012255-43012305	BE2_C	brain:	n/a
50	chr19:43099124-43099174	CMK	blood:	n/a

(count:39 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:43167897..43169449-chr19:43169988..43172834,2	MCF-7	breast:
2	chr19:43139154..43139986-chr19:43246322..43246897,2	MCF-7	breast:
3	chr19:43092830..43095599-chr19:43097248..43100120,2	K562	blood:
4	chr19:43167897..43169449-chr19:43169988..43172834,2	MCF-7	breast:
5	chr19:43138891..43139734-chr19:43166436..43166942,2	MCF-7	breast:
6	chr19:43110594..43111450-chr19:43197610..43198160,2	MCF-7	breast:
7	chr19:43015384..43018230-chr19:43027270..43028930,2	MCF-7	breast:
8	chr19:42633464..42636070-chr19:43108015..43110975,2	K562	blood:
9	chr19:42942358..42943244-chr19:43033307..43034019,3	MCF-7	breast:
10	chr19:43067242..43067993-chr19:43100482..43101078,2	MCF-7	breast:
11	chr19:43139185..43139985-chr19:43166999..43167914,2	MCF-7	breast:
12	chr19:42954321..42955243-chr19:43033178..43034138,5	MCF-7	breast:
13	chr19:42954315..42955211-chr19:43033063..43034067,7	K562	blood:
14	chr19:43086009..43087735-chr19:43091658..43093226,2	MCF-7	breast:
15	chr19:43070688..43071772-chr19:43100056..43100921,4	MCF-7	breast:
16	chr19:43149390..43151656-chr19:43158079..43159963,2	MCF-7	breast:
17	chr19:43068025..43070729-chr19:43097303..43100270,2	MCF-7	breast:
18	chr19:42954441..42955205-chr19:43100309..43101289,2	MCF-7	breast:
19	chr19:43118862..43121094-chr19:43122600..43124613,2	K562	blood:
20	chr19:43027445..43029182-chr19:43031157..43032882,2	MCF-7	breast:
21	chr19:43068393..43071134-chr19:43075524..43077066,2	MCF-7	breast:
22	chr19:42954317..42955251-chr19:43045554..43046465,4	K562	blood:
23	chr19:43023426..43026592-chr19:43026629..43028829,3	K562	blood:
24	chr19:43070787..43071783-chr19:43100383..43100953,3	MCF-7	breast:
25	chr19:43139185..43139985-chr19:43166999..43167914,2	MCF-7	breast:
26	chr19:43086009..43087735-chr19:43091658..43093226,2	MCF-7	breast:
27	chr19:42965246..42967758-chr19:43079335..43081443,2	MCF-7	breast:
28	chr19:43118862..43121094-chr19:43122600..43124613,2	K562	blood:
29	chr19:42954301..42955305-chr19:43033122..43034033,12	MCF-7	breast:
30	chr19:43110921..43111495-chr19:43166501..43167328,2	MCF-7	breast:
31	chr19:43067242..43067993-chr19:43100482..43101078,2	MCF-7	breast:
32	chr19:43070688..43071772-chr19:43100056..43100921,4	MCF-7	breast:
33	chr19:43026349..43028606-chr19:43031972..43033644,2	K562	blood:
34	chr19:43138891..43139734-chr19:43166436..43166942,2	MCF-7	breast:
35	chr19:43110921..43111495-chr19:43166501..43167328,2	MCF-7	breast:
36	chr19:43148558..43149434-chr20:53015100..53015659,2	MCF-7	breast:
37	chr19:43068393..43071134-chr19:43075524..43077066,2	MCF-7	breast:
38	chr19:43070787..43071783-chr19:43100383..43100953,3	MCF-7	breast:
39	chr19:42954288..42955082-chr19:43045565..43046131,2	MCF-7	breast:

(count:25 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC011497.1-2	chr19:43015049-43015126	ENSG00000213904.4
2	lnc-AC011497.1-2	chr19:43155239-43156507	NONHSAT066551
3	lnc-CXCL17-3	chr19:43016503-43016631	NONHSAT066562
4	lnc-CXCL17-3	chr19:43013252-43013380	NONHSAT066560
5	lnc-CXCL17-3	chr19:43015042-43015072	NONHSAT066562
6	lnc-CXCL17-3	chr19:43015729-43015780	NONHSAT066562
7	lnc-CXCL17-3	chr19:43011547-43014396	refGeneNc_4167_NR_033747
8	lnc-CEACAM8-1	chr19:43064585-43064946	NONHSAT066563
9	lnc-AC011497.1-2	chr19:43155239-43156507	ENSG00000213904.4
10	lnc-CXCL17-3	chr19:43013360-43013380	NONHSAT066562
11	lnc-CXCL17-3	chr19:43015410-43015562	NONHSAT066560
12	lnc-CXCL17-3	chr19:43015041-43015236	NONHSAT066561
13	lnc-AC011497.1-2	chr19:43155239-43156507	NONHSAT066548
14	lnc-AC011497.1-2	chr19:43026144-43026250	ENSG00000213904.4
15	lnc-AC011497.1-2	chr19:43155869-43156816	NONHSAT066564
16	lnc-AC011497.1-2	chr19:43155239-43156171	ENSG00000213904.4
17	lnc-AC011497.1-2	chr19:43155388-43155602	NONHSAT066564
18	lnc-CXCL17-3	chr19:43013256-43013380	NONHSAT066561
19	lnc-CXCL17-3	chr19:43025420-43025500	NONHSAT066562
20	lnc-CXCL17-3	chr19:43015041-43015072	NONHSAT066560
21	lnc-CXCL17-3	chr19:43016502-43016563	NONHSAT066560
22	lnc-AC011497.1-2	chr19:43029770-43030021	ENSG00000213904.4
23	lnc-CXCL17-3	chr19:43019164-43019255	NONHSAT066562
24	lnc-CEACAM8-1	chr19:43065825-43065902	NONHSAT066563
25	lnc-CXCL17-3	chr19:43015728-43015780	NONHSAT066560

No data

Variant related genes	Relation type
CEACAMP1	TF binding region
RPS10P28	TF binding region
CEACAM8	TF binding region
CEACAMP5	TF binding region
CEACAM1	TF binding region
CEACAMP2	TF binding region
CEACAMP1	CpG island
RPS10P28	CpG island
CEACAM8	CpG island
CEACAMP5	CpG island
CEACAM1	CpG island
CEACAMP2	CpG island
ENSG00000231561	chromatin interactions
ENSG00000124469	chromatin interactions
ENSG00000079385	chromatin interactions

Extended variants
information (count: 5369 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:5369 , 50 per page) page: 1 2 3 4 5 6 7 ... 108

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs151317206	chr19:43003364-43003365	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs188617106	chr19:43003418-43003419	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs578019159	chr19:43003478-43003479	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs540735034	chr19:43003479-43003480	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs560438281	chr19:43003634-43003635	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs140707750	chr19:43003664-43003665	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs543287973	chr19:43003669-43003670	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs372583220	chr19:43003758-43003759	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs563166678	chr19:43003774-43003775	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs532078054	chr19:43003791-43003792	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs550572324	chr19:43003898-43003899	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs570988607	chr19:43003909-43003910	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs564129954	chr19:43003911-43003912	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs538311440	chr19:43003965-43003966	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs532854544	chr19:43003969-43003970	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs546684331	chr19:43004011-43004012	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs192796402	chr19:43004027-43004028	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs12461441	chr19:43004063-43004064	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs182478815	chr19:43004096-43004097	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs186885802	chr19:43004108-43004109	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs568063476	chr19:43004117-43004118	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs568798614	chr19:43004147-43004148	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs189006047	chr19:43004152-43004153	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs112570580	chr19:43004161-43004162	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs201292772	chr19:43004185-43004186	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs369317374	chr19:43004191-43004192	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs17340417	chr19:43004265-43004266	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs571959762	chr19:43004266-43004267	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs577976575	chr19:43004347-43004348	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs4802138	chr19:43004398-43004399	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs542401256	chr19:43004450-43004451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs554233811	chr19:43004502-43004503	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs573075383	chr19:43004511-43004512	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs191368062	chr19:43004518-43004519	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs183468405	chr19:43004555-43004556	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs563103000	chr19:43004584-43004585	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs531260051	chr19:43004654-43004655	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs34584562	chr19:43004677-43004678	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs376400793	chr19:43004741-43004742	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs138407679	chr19:43004756-43004757	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs563887407	chr19:43004766-43004767	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs76165857	chr19:43004777-43004778	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs576979653	chr19:43004797-43004798	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs560186384	chr19:43004854-43004855	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs528992115	chr19:43004880-43004881	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs548748339	chr19:43004899-43004900	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs568735257	chr19:43004908-43004909	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs531460680	chr19:43004909-43004910	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs190436025	chr19:43004945-43004946	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs534515831	chr19:43005012-43005013	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Astrocytoma	22246337	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	17550852	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:1315 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42997000-43003800	Enhancers	Fetal Intestine Small	intestine
2	chr19:42998000-43004800	Enhancers	Fetal Intestine Large	intestine
3	chr19:42999600-43003400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr19:43000600-43003600	Enhancers	Fetal Kidney	kidney
5	chr19:43000600-43003800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:43000800-43003400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr19:43000800-43003400	Enhancers	Small Intestine	intestine
8	chr19:43001000-43003600	Enhancers	Brain Hippocampus Middle	brain
9	chr19:43001200-43003800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr19:43001400-43003600	Enhancers	Brain Anterior Caudate	brain
11	chr19:43001400-43003600	Enhancers	Brain Cingulate Gyrus	brain
12	chr19:43001400-43003600	Enhancers	Stomach Mucosa	stomach
13	chr19:43001800-43003400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr19:43001800-43003600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr19:43001800-43003600	Enhancers	Brain Angular Gyrus	brain
16	chr19:43001800-43003600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr19:43001800-43003600	Enhancers	Brain Substantia Nigra	brain
18	chr19:43001800-43003600	Enhancers	Colonic Mucosa	Colon
19	chr19:43001800-43009400	Weak transcription	Aorta	Aorta
20	chr19:43002000-43003400	Enhancers	Placenta	Placenta
21	chr19:43002000-43008600	Weak transcription	Right Ventricle	heart
22	chr19:43002200-43015000	Weak transcription	Spleen	Spleen
23	chr19:43002200-43025200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr19:43002400-43004000	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr19:43002400-43022400	Weak transcription	Lung	lung
26	chr19:43002600-43003400	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr19:43002600-43004000	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr19:43002600-43010200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr19:43002800-43003600	Enhancers	Liver	Liver
30	chr19:43002800-43014800	Weak transcription	Adipose Nuclei	Adipose
31	chr19:43002800-43014800	Weak transcription	Left Ventricle	heart
32	chr19:43002800-43023000	Weak transcription	Gastric	stomach
33	chr19:43003000-43003400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr19:43003000-43003600	Enhancers	A549	lung
35	chr19:43003000-43005400	Enhancers	HepG2	liver
36	chr19:43003000-43013400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr19:43003200-43003400	Enhancers	Esophagus	oesophagus
38	chr19:43003200-43003600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr19:43003200-43003600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr19:43003200-43003600	Enhancers	Duodenum Mucosa	Duodenum
41	chr19:43003200-43008400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr19:43003200-43014600	Weak transcription	Primary B cells from cord blood	blood
43	chr19:43003200-43030600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr19:43003400-43003600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr19:43003400-43009400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr19:43003400-43012800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr19:43003400-43014600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr19:43003400-43015200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr19:43003400-43019000	Weak transcription	Placenta	Placenta
50	chr19:43003400-43028400	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links