Variant report

Variant	nsv1057466
Chromosome Location	chr20:26266086-26305567
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4747 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:4747 , 50 per page) page: 1 2 3 4 5 6 7 ... 95

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554140144	chr20:26266101-26266102	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs189532889	chr20:26266125-26266126	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs566869213	chr20:26266145-26266146	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs545526903	chr20:26266175-26266176	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200803892	chr20:26266190-26266191	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201826268	chr20:26266267-26266268	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs202024585	chr20:26266270-26266271	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs527613705	chr20:26266287-26266288	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs371457952	chr20:26266296-26266297	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs199948928	chr20:26266306-26266307	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs200495777	chr20:26266311-26266312	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs1307632	chr20:26266313-26266314	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs561418978	chr20:26266315-26266316	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs202046345	chr20:26266320-26266321	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs200022626	chr20:26266345-26266346	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs530247323	chr20:26266366-26266367	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201174116	chr20:26266373-26266374	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs546775956	chr20:26266384-26266385	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs202021960	chr20:26266400-26266401	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs369882136	chr20:26266414-26266415	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs561203360	chr20:26266430-26266431	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs567079754	chr20:26266446-26266447	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs532840936	chr20:26266471-26266472	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs552332601	chr20:26266472-26266473	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs569245425	chr20:26266475-26266476	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs181071561	chr20:26266524-26266525	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs75554968	chr20:26266540-26266541	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs555114299	chr20:26266550-26266551	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201019904	chr20:26266553-26266554	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs76837370	chr20:26266559-26266560	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs75104432	chr20:26266561-26266562	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs76250266	chr20:26266586-26266587	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs74552100	chr20:26266588-26266589	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs568548498	chr20:26266604-26266605	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs112733568	chr20:26266606-26266607	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs531413874	chr20:26266612-26266613	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs534003168	chr20:26266624-26266625	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs78704005	chr20:26266630-26266631	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs62196895	chr20:26266635-26266636	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs376696435	chr20:26266642-26266643	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs367632257	chr20:26266648-26266649	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs192413780	chr20:26266649-26266650	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs150800955	chr20:26266663-26266664	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs111361558	chr20:26266667-26266668	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs62196896	chr20:26266670-26266671	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs79054492	chr20:26266675-26266676	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs139859172	chr20:26266679-26266680	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs80151482	chr20:26266682-26266683	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs146718530	chr20:26266685-26266686	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs200600975	chr20:26266694-26266695	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:311 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:26262600-26266800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr20:26262600-26266800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr20:26263400-26266800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr20:26264400-26266800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr20:26264400-26268400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr20:26264600-26269400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr20:26265200-26267000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr20:26265800-26266400	Weak transcription	GM12878-XiMat	blood
9	chr20:26265800-26274400	Weak transcription	NH-A	brain
10	chr20:26266000-26266200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr20:26266000-26266200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr20:26266000-26266400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr20:26266000-26266800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr20:26266000-26267600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr20:26266400-26266600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr20:26266600-26267000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr20:26266600-26267200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr20:26266600-26267200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
19	chr20:26266800-26267000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr20:26266800-26267200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr20:26266800-26267600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr20:26266800-26268400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr20:26266800-26268800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr20:26267000-26267200	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr20:26267000-26268800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr20:26267200-26267400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr20:26267200-26267600	ZNF genes & repeats	HUVEC	blood vessel
28	chr20:26267400-26267800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr20:26267400-26268600	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr20:26267800-26268600	Weak transcription	GM12878-XiMat	blood
31	chr20:26267800-26270200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr20:26268400-26269400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr20:26268400-26270000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr20:26268400-26270600	Enhancers	Dnd41	blood
35	chr20:26268600-26268800	ZNF genes & repeats	GM12878-XiMat	blood
36	chr20:26268600-26269800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr20:26268800-26269800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr20:26268800-26270000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr20:26269400-26269800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr20:26269400-26269800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr20:26269400-26270600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr20:26269800-26270400	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr20:26269800-26270600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr20:26269800-26270800	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr20:26270000-26270200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
46	chr20:26270000-26270400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr20:26270000-26270400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr20:26270400-26275000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr20:26270400-26275200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr20:26270600-26272000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links