Variant report

Variant	nsv1059447
Chromosome Location	chr20:25941928-26305567
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4442)
CpG islands
(count:1527)
Chromatin interactive
region (count:66)
LncRNA
region (count:224)
Mature miRNA
region (count: 1)
miRNA target
sites (count:0)

(count:4442 , 50 per page) page: 1 2 3 4 5 6 7 ... 89

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:26188670-26190654	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:26188665-26190661	K562	blood:	n/a	n/a
3	ARID3A	chr20:25989422-25989527	HepG2	liver:	n/a	n/a
4	ATF1	chr20:26201702-26201703	K562	blood:	n/a	n/a
5	ATF1	chr20:26302622-26302991	K562	blood:	n/a	n/a
6	ATF1	chr20:26293066-26293834	K562	blood:	n/a	n/a
7	ATF1	chr20:26210425-26210440	K562	blood:	n/a	n/a
8	ATF1	chr20:26269527-26269727	K562	blood:	n/a	n/a
9	ATF1	chr20:26259878-26260247	K562	blood:	n/a	n/a
10	ATF1	chr20:26202933-26202936	K562	blood:	n/a	n/a
11	ATF1	chr20:26207076-26207177	K562	blood:	n/a	n/a
12	ATF1	chr20:26206579-26206689	K562	blood:	n/a	n/a
13	ATF1	chr20:26207700-26208236	K562	blood:	n/a	n/a
14	ATF1	chr20:26212000-26212002	K562	blood:	n/a	n/a
15	ATF1	chr20:26204024-26204365	K562	blood:	n/a	n/a
16	ATF1	chr20:26300230-26300430	K562	blood:	n/a	n/a
17	ATF1	chr20:26209393-26209538	K562	blood:	n/a	n/a
18	ATF1	chr20:26210887-26211336	K562	blood:	n/a	n/a
19	ATF1	chr20:26213000-26213056	K562	blood:	n/a	n/a
20	ATF1	chr20:26202019-26202231	K562	blood:	n/a	n/a
21	ATF1	chr20:26200807-26200973	K562	blood:	n/a	n/a
22	ATF2	chr20:26189688-26190460	GM12878	blood:	n/a	n/a
23	ATF2	chr20:26189705-26190319	GM12878	blood:	n/a	n/a
24	ATF2	chr20:26188609-26189520	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF2	chr20:26189566-26190667	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF2	chr20:26188658-26189437	GM12878	blood:	n/a	n/a
27	ATF2	chr20:26189559-26190696	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF2	chr20:26188598-26189527	H1-hESC	embryonic stem cell:	n/a	n/a
29	ATF2	chr20:26188742-26189499	GM12878	blood:	n/a	n/a
30	ATF2	chr20:26190350-26190549	GM12878	blood:	n/a	n/a
31	ATF2	chr20:25990276-25990617	GM12878	blood:	n/a	n/a
32	ATF3	chr20:26189549-26190567	H1-hESC	embryonic stem cell:	n/a	chr20:26190344-26190352
33	ATF3	chr20:26188778-26189204	GM12878	blood:	n/a	n/a
34	ATF3	chr20:26188662-26189535	H1-hESC	embryonic stem cell:	n/a	n/a
35	ATF3	chr20:26188637-26190747	A549	lung:	n/a	chr20:26190344-26190352
36	ATF3	chr20:26189743-26190295	GM12878	blood:	n/a	n/a
37	ATF3	chr20:26190355-26190540	HepG2	liver:	n/a	n/a
38	ATF3	chr20:26188697-26190655	K562	blood:	n/a	chr20:26190344-26190352
39	ATF3	chr20:26190389-26190519	K562	blood:	n/a	n/a
40	ATF3	chr20:26189712-26190314	K562	blood:	n/a	n/a
41	ATF3	chr20:26189239-26189386	K562	blood:	n/a	n/a
42	ATF3	chr20:26188677-26189497	HepG2	liver:	n/a	n/a
43	ATF3	chr20:26189724-26190322	HepG2	liver:	n/a	n/a
44	ATF3	chr20:26188643-26190671	A549	lung:	n/a	chr20:26190344-26190352
45	ATF3	chr20:26188754-26189204	K562	blood:	n/a	n/a
46	ATF3	chr20:26189747-26190340	K562	blood:	n/a	n/a
47	ATF3	chr20:26189707-26190649	H1-hESC	embryonic stem cell:	n/a	chr20:26190344-26190352
48	BACH1	chr20:26266555-26266850	K562	blood:	n/a	n/a
49	BACH1	chr20:26203731-26203928	K562	blood:	n/a	n/a
50	BACH1	chr20:26188668-26190665	K562	blood:	n/a	n/a

(count:1527 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:26186908-26186958	H1-hESC	embryonic stem cell:	embryo
2	chr20:25988266-25988316	HIPEpiC	eye:	n/a
3	chr20:26186908-26186958	H1-hESC	embryonic stem cell:	embryo
4	chr20:25988266-25988316	HIPEpiC	eye:	n/a
5	chr20:26186908-26186958	BE2_C	brain:	n/a
6	chr20:26062310-26062360	K562	blood:	n/a
7	chr20:25989775-25989825	NT2-D1	testis:	n/a
8	chr20:26188997-26189047	SK-N-MC	brain:	n/a
9	chr20:26189665-26189715	MCF-7	breast:	n/a
10	chr20:26188971-26189021	HUVEC	blood vessel:	n/a
11	chr20:26188908-26188958	AoSMC	blood vessel:	n/a
12	chr20:26189240-26189290	GM19239	blood:	n/a
13	chr20:26062310-26062360	GM12878	blood:	n/a
14	chr20:25989674-25989724	HCF	heart:	n/a
15	chr20:26188997-26189047	AG04449	skin:	fetal
16	chr20:26189510-26189560	HNPCEpiC	eye:	n/a
17	chr20:26190354-26190404	HAEpiC	amniotic membrane:	n/a
18	chr20:26188919-26188969	PrEC	prostate:	n/a
19	chr20:26188943-26188993	PrEC	prostate:	n/a
20	chr20:26188908-26188958	H1-hESC	embryonic stem cell:	embryo
21	chr20:26188997-26189047	HCM	heart:	n/a
22	chr20:26188943-26188993	NHDF-neo	bronchial:	n/a
23	chr20:26188919-26188969	ECC-1	luminal epithelium:	n/a
24	chr20:26189510-26189560	GM12891	blood:	n/a
25	chr20:26192541-26192591	GM06990	blood:	n/a
26	chr20:26190347-26190397	AG04450	lung:	fetal
27	chr20:26189665-26189715	HepG2	liver:	n/a
28	chr20:25990680-25990730	AG10803	skin:	n/a
29	chr20:26190347-26190397	HEEpiC	esophagus:	n/a
30	chr20:26189510-26189560	SKMC	muscle:	n/a
31	chr20:26189240-26189290	PANC-1	pancreas:	n/a
32	chr20:26186545-26186595	HCF	heart:	n/a
33	chr20:26189240-26189290	HAEpiC	amniotic membrane:	n/a
34	chr20:25988266-25988316	AG09319	gingival:	n/a
35	chr20:26186908-26186958	HepG2	liver:	n/a
36	chr20:26192541-26192591	GM12892	blood:	n/a
37	chr20:25989674-25989724	NH-A	brain:	n/a
38	chr20:26190347-26190397	H1-hESC	embryonic stem cell:	embryo
39	chr20:26188976-26189026	NHBE	bronchial:	n/a
40	chr20:25989032-25989082	PANC-1	pancreas:	n/a
41	chr20:25989674-25989724	SK-N-SH	brain:	n/a
42	chr20:26189665-26189715	AG04449	skin:	fetal
43	chr20:26186545-26186595	PrEC	prostate:	n/a
44	chr20:26062310-26062360	SK-N-MC	brain:	n/a
45	chr20:26192541-26192591	HIPEpiC	eye:	n/a
46	chr20:26188639-26188689	HUVEC	blood vessel:	n/a
47	chr20:26189240-26189290	RPTEC	kidney:	n/a
48	chr20:26190347-26190397	AG10803	skin:	n/a
49	chr20:26188919-26188969	AG09309	skin:	n/a
50	chr20:26189665-26189715	NB4	blood:	n/a

(count:66 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr2:133015237..133015768-chr20:26189161..26190454,3	K562	blood:
2	chr2:133015211..133015762-chr20:26189170..26190019,2	MCF-7	breast:
3	chr16:33961325..33966193-chr20:26187372..26191793,13	K562	blood:
4	chr2:133014681..133015764-chr20:26189070..26190458,26	MCF-7	breast:
5	chr12:20703970..20704942-chr20:26190011..26190793,2	K562	blood:
6	chr2:133014709..133015762-chr20:26188882..26190143,12	MCF-7	breast:
7	chr20:26188344..26189679-chr21:9825010..9826530,20	HCT-116	colon:
8	chr18:8406500..8407500-chr20:26188735..26189378,2	MCF-7	breast:
9	chr20:26188341..26189368-chr21:9825099..9826092,4	MCF-7	breast:
10	chr20:26188413..26189362-chr8:101964386..101965001,2	MCF-7	breast:
11	chr17:73256462..73259302-chr20:26189013..26191624,2	MCF-7	breast:
12	chr20:26192921..26195094-chr20:26197740..26199404,2	K562	blood:
13	chr13:63637281..63639152-chr20:26145559..26147940,2	K562	blood:
14	chr12:20704427..20705972-chr20:26188595..26190576,2	MCF-7	breast:
15	chr20:26201915..26204776-chr3:75992954..75996738,5	MCF-7	breast:
16	chr2:75937839..75938339-chr20:26189314..26190135,2	MCF-7	breast:
17	chr20:26187350..26191964-chr21:9824053..9828992,54	K562	blood:
18	chr12:20703907..20704890-chr20:26188413..26189402,2	MCF-7	breast:
19	chr1:109756113..109757974-chr20:26187645..26190102,2	MCF-7	breast:
20	chr16:33960878..33961871-chr20:26188853..26189656,7	MCF-7	breast:
21	chr20:26188395..26190565-chr6:74228700..74231505,2	MCF-7	breast:
22	chr13:63647812..63648534-chr20:26148535..26149113,2	MCF-7	breast:
23	chr20:26201563..26203476-chr3:75993448..75995749,2	K562	blood:
24	chr20:26187251..26191978-chr21:9823998..9829001,56	K562	blood:
25	chr20:26206073..26206971-chr3:75991464..75992265,2	MCF-7	breast:
26	chr20:26208095..26209894-chr3:75988198..75990401,2	MCF-7	breast:
27	chr20:26188947..26190833-chr6:26156720..26159562,2	MCF-7	breast:
28	chr2:133013667..133017081-chr20:26187658..26190834,11	MCF-7	breast:
29	chr20:26131190..26134756-chr7:57619861..57622623,3	K562	blood:
30	chr2:133011277..133016757-chr20:26187363..26191986,20	K562	blood:
31	chr16:33960778..33961976-chr20:26188545..26190262,6	K562	blood:
32	chr20:26189053..26190595-chr8:67624606..67626126,2	MCF-7	breast:
33	chr16:33959793..33967555-chr20:26187372..26191632,15	K562	blood:
34	chr12:127649141..127652032-chr20:26188488..26190208,4	K562	blood:
35	chr20:26188254..26190671-chr21:9824984..9827890,92	MCF-7	breast:
36	chr20:26199924..26201625-chr3:75995563..75997738,2	MCF-7	breast:
37	chr20:26130778..26134198-chr7:57619861..57623955,5	K562	blood:
38	chr20:26192921..26195094-chr20:26197740..26199404,2	K562	blood:
39	chr20:26208071..26209607-chr3:75987301..75988916,2	K562	blood:
40	chr13:63647679..63650483-chr20:26148365..26151073,2	K562	blood:
41	chr20:26188271..26189555-chr21:9824988..9827433,58	MCF-7	breast:
42	chr1:17866319..17866839-chr20:26189992..26190745,2	MCF-7	breast:
43	chr19:56154889..56155389-chr20:26189706..26190477,2	K562	blood:
44	chr2:133011277..133017359-chr20:26187383..26191986,21	K562	blood:
45	chr16:33960780..33961953-chr20:26188513..26190294,8	MCF-7	breast:
46	chr20:26188275..26190944-chr21:9825018..9827152,38	MCF-7	breast:
47	chr2:133014633..133016102-chr20:26188637..26190095,17	MCF-7	breast:
48	chr20:26188275..26190975-chr21:9824996..9827903,45	K562	blood:
49	chr16:33961305..33961892-chr20:26188839..26189533,2	MCF-7	breast:
50	chr20:26190004..26190733-chr8:67687205..67687727,4	MCF-7	breast:

(count:224 , 50 per page) page: 1 2 3 4 5

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182B-3	chr20:25989427-25989691	XLOC_013712
2	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
3	lnc-FAM182A-4	chr20:26054406-26054495	ENSG00000125804.9
4	lnc-FAM182B-6	chr20:26168271-26168473	ENSG00000227195.4
5	lnc-FAM182B-6	chr20:26189783-26189858	ENSG00000227195.4
6	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
7	lnc-FAM182B-6	chr20:26188781-26188874	ENSG00000227195.4
8	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
9	lnc-FAM182B-6	chr20:26167632-26168473	XLOC_013715
10	lnc-FAM182B-6	chr20:26168268-26168473	ENSG00000227195.4
11	lnc-FAM182B-6	chr20:26189783-26189825	ENSG00000227195.4
12	lnc-FAM182B-6	chr20:26172769-26172868	XLOC_013715
13	lnc-FAM182A-4	chr20:26061824-26062026	ENSG00000125804.9
14	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
15	lnc-FAM182A-6	chr20:25968084-25968225	NONHSAT079206
16	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195
17	lnc-FAM182A-1	chr20:25943698-25943832	XLOC_013502
18	lnc-FAM182B-6	chr20:26180832-26180952	ENSG00000227195.4
19	lnc-FAM182B-6	chr20:26180085-26180159	ENSG00000227195
20	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195
21	lnc-FAM182B-6	chr20:26189635-26189731	ENSG00000227195.4
22	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
23	lnc-FAM182B-6	chr20:26172769-26172868	XLOC_013715
24	lnc-FAM182B-6	chr20:26189900-26189993	ENSG00000227195.4
25	lnc-FAM182B-6	chr20:26180085-26180159	ENSG00000227195.4
26	lnc-FAM182B-6	chr20:26189900-26189942	ENSG00000227195.4
27	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
28	lnc-FAM182B-6	chr20:26170599-26170755	ENSG00000227195.4
29	lnc-FAM182B-6	chr20:26172307-26172399	ENSG00000227195.4
30	lnc-FAM182A-2	chr20:26171625-26171691	XLOC_013504
31	lnc-FAM182B-6	chr20:26189783-26189897	ENSG00000227195.4
32	lnc-FAM182B-6	chr20:26172429-26172532	ENSG00000227195.4
33	lnc-FAM182A-5	chr20:26122024-26122582	NONHSAT079227
34	lnc-FAM182B-6	chr20:26231899-26232102	ENSG00000227195.4
35	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
36	lnc-FAM182B-6	chr20:26180085-26180159	ENSG00000227195.4
37	lnc-FAM182B-6	chr20:26168346-26168473	ENSG00000227195.4
38	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
39	lnc-FAM182B-6	chr20:26180832-26180952	ENSG00000227195.4
40	lnc-FAM182B-5	chr20:26157211-26157741	XLOC_013714
41	lnc-FAM182B-6	chr20:26189783-26189897	ENSG00000227195.4
42	lnc-FAM182B-6	chr20:26188310-26188679	ENSG00000227195.4
43	lnc-FAM182B-6	chr20:26180085-26180159	ENSG00000227195.4
44	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
45	lnc-FAM182B-6	chr20:26167655-26168473	ENSG00000227195
46	lnc-FAM182B-6	chr20:26172429-26172497	ENSG00000227195.4
47	lnc-FAM182B-6	chr20:26180085-26180159	ENSG00000227195.4
48	lnc-FAM182B-6	chr20:26180085-26180159	ENSG00000227195.4
49	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
50	lnc-FAM182B-6	chr20:26180085-26180161	ENSG00000227195.4

miRNA name	Chromosome Location	mirBase accession
hsa-miR-663a	chr20:26188879-26188900	MIMAT0003326

No data

Variant related genes	Relation type
ENSG00000230440	TF binding region
ENSG00000238129	TF binding region
FAM182A	TF binding region
ENSG00000231081	TF binding region
ENSG00000204556	TF binding region
MIR663A	TF binding region
NCOR1P1	TF binding region
ENSG00000230440	CpG island
ENSG00000238129	CpG island
FAM182A	CpG island
ENSG00000231081	CpG island
ENSG00000204556	CpG island
MIR663A	CpG island
NCOR1P1	CpG island
ENSG00000200434	chromatin interactions
ENSG00000074964	chromatin interactions
ENSG00000164924	chromatin interactions
ENSG00000163046	chromatin interactions
ENSG00000239776	chromatin interactions
ENSG00000125445	chromatin interactions
ENSG00000207986	chromatin interactions
ENSG00000230102	chromatin interactions
ENSG00000221288	chromatin interactions
ENSG00000158373	chromatin interactions
ENSG00000188130	chromatin interactions
ENSG00000264462	chromatin interactions
ENSG00000156508	chromatin interactions
ENSG00000104205	chromatin interactions
ENSG00000163602	chromatin interactions
ENSG00000125447	chromatin interactions
ENSG00000005436	chromatin interactions
ENSG00000171425	chromatin interactions
ENSG00000263970	chromatin interactions
ENSG00000031698	chromatin interactions
ENSG00000256663	chromatin interactions
ENSG00000256642	chromatin interactions
ENSG00000264063	chromatin interactions
JUND	Mature miRNA region
CDK1	Mature miRNA region
JUNB	Mature miRNA region
TCEAL1	Mature miRNA region
HSPG2	Mature miRNA region
NXT2	miRNA target sites
SLC16A1	miRNA target sites
LIMCH1	miRNA target sites
MUC17	miRNA target sites

Extended variants
information (count: 12675 )
Associated
traits (count: 49 )

Variant overlapped rSNPs/rCNVs (count:12675 , 50 per page) page: 1 2 3 4 5 6 7 ... 254

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535910691	chr20:25943699-25943700	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs571954590	chr20:25943710-25943711	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs555951960	chr20:25943746-25943747	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs566096164	chr20:25943783-25943784	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs6037301	chr20:25943792-25943793	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs535339169	chr20:25943798-25943799	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs542581282	chr20:25943807-25943808	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs558208034	chr20:25943814-25943815	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs4085280	chr20:25943817-25943818	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs8125097	chr20:25943826-25943827	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs531174158	chr20:25945644-25945645	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs73599900	chr20:25945680-25945681	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs551170697	chr20:25945710-25945711	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs376269620	chr20:25945711-25945712	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs577025061	chr20:25945712-25945713	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs370362849	chr20:25945720-25945721	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs534848401	chr20:25945721-25945722	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs536916658	chr20:25945730-25945731	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs546698104	chr20:25945742-25945743	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs374120849	chr20:25945745-25945746	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs151028537	chr20:25945776-25945777	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs533247267	chr20:25945779-25945780	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs146432255	chr20:25945791-25945792	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs73599901	chr20:25945807-25945808	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs370382978	chr20:25945808-25945809	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
26	rs569006826	chr20:25945817-25945818	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs56787461	chr20:25945841-25945842	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs73599902	chr20:25945853-25945854	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs66738921	chr20:25945865-25945866	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs73601703	chr20:25945906-25945907	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs554329416	chr20:25945908-25945909	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs73620349	chr20:25945931-25945932	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs73601704	chr20:25945974-25945975	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
34	rs73601705	chr20:25945979-25945980	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs73601706	chr20:25945995-25945996	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
36	rs574661442	chr20:25946037-25946038	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
37	rs6132908	chr20:25946058-25946059	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs73601707	chr20:25946075-25946076	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
39	rs6107111	chr20:25946090-25946091	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
40	rs73601708	chr20:25946093-25946094	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
41	rs553496263	chr20:25946112-25946113	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
42	rs73601709	chr20:25946115-25946116	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
43	rs149264147	chr20:25946133-25946134	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
44	rs545809748	chr20:25946134-25946135	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
45	rs4815489	chr20:25946153-25946154	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs4815490	chr20:25946160-25946161	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs73601710	chr20:25946161-25946162	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
48	rs377491289	chr20:25946162-25946163	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
49	rs4813593	chr20:25946165-25946166	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs188915495	chr20:25946171-25946172	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:49)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:1382 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25945800-25946200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr20:25946000-25946400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr20:25956000-25956400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:25957200-25957600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr20:25957600-25964200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr20:25961000-25961400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr20:25964200-25964400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr20:25964200-25965400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr20:25964400-25965400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr20:25965000-25965600	Enhancers	Fetal Stomach	stomach
11	chr20:25965000-25968600	Active TSS	Brain Germinal Matrix	brain
12	chr20:25965200-25965800	Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr20:25965200-25966600	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr20:25965200-25966600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr20:25965200-25966800	Active TSS	Fetal Brain Female	brain
16	chr20:25965400-25965600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr20:25965400-25965600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr20:25965400-25965600	Active TSS	Fetal Muscle Trunk	muscle
19	chr20:25965400-25965600	Bivalent Enhancer	Placenta	Placenta
20	chr20:25965400-25965800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr20:25965400-25965800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr20:25965400-25965800	Active TSS	Muscle Satellite Cultured Cells	--
23	chr20:25965400-25966000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr20:25965400-25966000	Active TSS	Left Ventricle	heart
25	chr20:25965400-25966000	Active TSS	Ovary	ovary
26	chr20:25965400-25966000	Active TSS	Psoas Muscle	Psoas
27	chr20:25965400-25966000	Active TSS	HSMM	muscle
28	chr20:25965400-25966000	Active TSS	NH-A	brain
29	chr20:25965400-25966000	Active TSS	Osteobl	bone
30	chr20:25965400-25966200	Active TSS	Primary T cells fromperipheralblood	blood
31	chr20:25965400-25966200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr20:25965400-25966200	Active TSS	Colon Smooth Muscle	Colon
33	chr20:25965400-25966200	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr20:25965400-25966200	Active TSS	Right Ventricle	heart
35	chr20:25965400-25966200	Active TSS	Stomach Smooth Muscle	stomach
36	chr20:25965400-25966200	Active TSS	Thymus	Thymus
37	chr20:25965400-25966400	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr20:25965400-25966400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr20:25965400-25966400	Active TSS	Brain Anterior Caudate	brain
40	chr20:25965400-25966400	Active TSS	Brain Hippocampus Middle	brain
41	chr20:25965400-25966400	Active TSS	Brain Substantia Nigra	brain
42	chr20:25965400-25966600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr20:25965400-25966800	Active TSS	Brain Cingulate Gyrus	brain
44	chr20:25965600-25965800	Enhancers	Esophagus	oesophagus
45	chr20:25965600-25965800	Active TSS	Fetal Stomach	stomach
46	chr20:25965600-25965800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr20:25965600-25966000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr20:25965600-25966000	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr20:25965600-25966000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr20:25965600-25966000	Active TSS	Aorta	Aorta

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