Variant report
Variant | nsv1060654 |
---|---|
Chromosome Location | chr19:43228125-43451808 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3670)
- CpG islands (count:2077)
- Chromatin interactive region (count:7)
- LncRNA region (count:32)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ATF3 | chr19:43335307-43336092 | A549 | lung: | n/a | n/a |
2 | ATF3 | chr19:43355412-43355889 | A549 | lung: | n/a | n/a |
3 | ATF3 | chr19:43336336-43336928 | A549 | lung: | n/a | n/a |
4 | ATF3 | chr19:43336349-43336838 | A549 | lung: | n/a | n/a |
5 | ATF3 | chr19:43335349-43336094 | A549 | lung: | n/a | n/a |
6 | ATF3 | chr19:43355048-43355947 | A549 | lung: | n/a | n/a |
7 | BATF | chr19:43361555-43361754 | GM12878 | blood: | n/a | n/a |
8 | BATF | chr19:43271446-43271728 | GM12878 | blood: | n/a | n/a |
9 | BATF | chr19:43246213-43246502 | GM12878 | blood: | n/a | n/a |
10 | BATF | chr19:43302238-43302533 | GM12878 | blood: | n/a | chr19:43302344-43302355 |
11 | BATF | chr19:43442962-43443231 | GM12878 | blood: | n/a | n/a |
12 | BCL3 | chr19:43354910-43356058 | A549 | lung: | n/a | n/a |
13 | BCL3 | chr19:43336972-43337663 | A549 | lung: | n/a | n/a |
14 | BCL3 | chr19:43323095-43323355 | GM12878 | blood: | n/a | n/a |
15 | BCL3 | chr19:43402518-43403428 | A549 | lung: | n/a | n/a |
16 | BCL3 | chr19:43336159-43337656 | A549 | lung: | n/a | chr19:43336227-43336234 |
17 | BCL3 | chr19:43335292-43335990 | A549 | lung: | n/a | chr19:43335602-43335611 chr19:43335603-43335612 |
18 | BCL3 | chr19:43297507-43298116 | A549 | lung: | n/a | n/a |
19 | BCL3 | chr19:43335242-43336126 | A549 | lung: | n/a | chr19:43335602-43335611 chr19:43335603-43335612 |
20 | BCL3 | chr19:43354946-43356043 | A549 | lung: | n/a | n/a |
21 | BCL3 | chr19:43336292-43336877 | A549 | lung: | n/a | n/a |
22 | BHLHE40 | chr19:43427453-43427512 | GM12878 | blood: | n/a | n/a |
23 | BHLHE40 | chr19:43355572-43355890 | A549 | lung: | n/a | n/a |
24 | BHLHE40 | chr19:43385480-43385517 | K562 | blood: | n/a | n/a |
25 | BRCA1 | chr19:43436723-43436914 | Hela-S3 | cervix: | n/a | n/a |
26 | BRCA1 | chr19:43355288-43355847 | Hela-S3 | cervix: | n/a | n/a |
27 | BRCA1 | chr19:43297623-43297950 | Hela-S3 | cervix: | n/a | n/a |
28 | BRCA1 | chr19:43265411-43265577 | Hela-S3 | cervix: | n/a | n/a |
29 | CBX3 | chr19:43385505-43385738 | K562 | blood: | n/a | n/a |
30 | CBX3 | chr19:43385431-43385838 | K562 | blood: | n/a | n/a |
31 | CEBPB | chr19:43265127-43265827 | Hela-S3 | cervix: | n/a | n/a |
32 | CEBPB | chr19:43355051-43355897 | A549 | lung: | n/a | n/a |
33 | CEBPB | chr19:43401993-43402212 | Hela-S3 | cervix: | n/a | n/a |
34 | CEBPB | chr19:43335392-43336031 | A549 | lung: | n/a | n/a |
35 | CEBPB | chr19:43297755-43297993 | A549 | lung: | n/a | n/a |
36 | CEBPB | chr19:43393825-43394224 | Hela-S3 | cervix: | n/a | n/a |
37 | CEBPB | chr19:43379142-43379806 | Hela-S3 | cervix: | n/a | n/a |
38 | CEBPB | chr19:43335389-43335855 | A549 | lung: | n/a | n/a |
39 | CEBPB | chr19:43239891-43240238 | IMR90 | lung: | n/a | n/a |
40 | CEBPB | chr19:43401903-43402263 | A549 | lung: | n/a | n/a |
41 | CEBPB | chr19:43335339-43335868 | A549 | lung: | n/a | n/a |
42 | CEBPB | chr19:43335434-43335820 | Hela-S3 | cervix: | n/a | n/a |
43 | CEBPB | chr19:43436540-43437331 | IMR90 | lung: | n/a | n/a |
44 | CEBPB | chr19:43355109-43355962 | IMR90 | lung: | n/a | n/a |
45 | CEBPB | chr19:43335425-43335832 | MCF-7 | breast: | n/a | n/a |
46 | CEBPB | chr19:43329328-43329348 | IMR90 | lung: | n/a | n/a |
47 | CEBPB | chr19:43326599-43326799 | A549 | lung: | n/a | n/a |
48 | CEBPB | chr19:43336488-43336863 | Hela-S3 | cervix: | n/a | n/a |
49 | CEBPB | chr19:43436593-43437171 | Hela-S3 | cervix: | n/a | n/a |
50 | CEBPB | chr19:43239908-43240549 | Hela-S3 | cervix: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43360755-43360805 | BJ | skin: | n/a |
2 | chr19:43385100-43385150 | HMEC | breast: | n/a |
3 | chr19:43245921-43245971 | SK-N-MC | brain: | n/a |
4 | chr19:43360755-43360805 | BJ | skin: | n/a |
5 | chr19:43385100-43385150 | HMEC | breast: | n/a |
6 | chr19:43245921-43245971 | SK-N-MC | brain: | n/a |
7 | chr19:43423176-43423226 | MCF-7 | breast: | n/a |
8 | chr19:43423115-43423165 | SK-N-SH | brain: | n/a |
9 | chr19:43269832-43269882 | HAEpiC | amniotic membrane: | n/a |
10 | chr19:43423115-43423165 | NB4 | blood: | n/a |
11 | chr19:43442804-43442854 | MCF10A-Er-Src | breast: | n/a |
12 | chr19:43442484-43442534 | HEEpiC | esophagus: | n/a |
13 | chr19:43441294-43441344 | HAEpiC | amniotic membrane: | n/a |
14 | chr19:43271004-43271054 | HAEpiC | amniotic membrane: | n/a |
15 | chr19:43355659-43355709 | HL-60 | blood: | n/a |
16 | chr19:43442484-43442534 | Hela-S3 | cervix: | n/a |
17 | chr19:43410455-43410505 | AG09309 | skin: | n/a |
18 | chr19:43269832-43269882 | HRPEpiC | eye: | n/a |
19 | chr19:43271058-43271108 | BE2_C | brain: | n/a |
20 | chr19:43385100-43385150 | BJ | skin: | n/a |
21 | chr19:43355659-43355709 | HRCEpiC | kidney: | n/a |
22 | chr19:43271058-43271108 | HRCEpiC | kidney: | n/a |
23 | chr19:43240516-43240566 | HEEpiC | esophagus: | n/a |
24 | chr19:43245921-43245971 | BJ | skin: | n/a |
25 | chr19:43421584-43421634 | Hepatocyte | liver: | n/a |
26 | chr19:43265778-43265828 | IMR90 | lung: | fetal |
27 | chr19:43240516-43240566 | PANC-1 | pancreas: | n/a |
28 | chr19:43360229-43360279 | SK-N-SH | brain: | n/a |
29 | chr19:43383799-43383849 | Hela-S3 | cervix: | n/a |
30 | chr19:43244680-43244730 | HPAEpiC | pulmonary alveolar: | n/a |
31 | chr19:43442693-43442743 | HepG2 | liver: | n/a |
32 | chr19:43355659-43355709 | MCF-7 | breast: | n/a |
33 | chr19:43385047-43385097 | K562 | blood: | n/a |
34 | chr19:43271004-43271054 | GM12878 | blood: | n/a |
35 | chr19:43271058-43271108 | AG04450 | lung: | fetal |
36 | chr19:43360755-43360805 | HEK293 | kidney: | embryo |
37 | chr19:43360229-43360279 | BE2_C | brain: | n/a |
38 | chr19:43245860-43245910 | U87 | brain: | n/a |
39 | chr19:43385100-43385150 | GM06990 | blood: | n/a |
40 | chr19:43384780-43384830 | AG09319 | gingival: | n/a |
41 | chr19:43442804-43442854 | SK-N-MC | brain: | n/a |
42 | chr19:43265778-43265828 | HL-60 | blood: | n/a |
43 | chr19:43269877-43269927 | Hepatocyte | liver: | n/a |
44 | chr19:43355659-43355709 | SK-N-SH | brain: | n/a |
45 | chr19:43442809-43442859 | BJ | skin: | n/a |
46 | chr19:43385047-43385097 | ProgFib | skin: | n/a |
47 | chr19:43269877-43269927 | Caco-2 | colon: | n/a |
48 | chr19:43421584-43421634 | Caco-2 | colon: | n/a |
49 | chr19:43271112-43271162 | PrEC | prostate: | n/a |
50 | chr19:43265778-43265828 | NHBE | bronchial: | n/a |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43139154..43139986-chr19:43246322..43246897,2 | MCF-7 | breast: | |
2 | chr19:43197647..43198196-chr19:43280850..43281744,2 | MCF-7 | breast: | |
3 | chr19:43265768..43266290-chr19:43769932..43770473,2 | MCF-7 | breast: | |
4 | chr19:43197619..43198590-chr19:43246174..43246898,3 | MCF-7 | breast: | |
5 | chr19:43197633..43198568-chr19:43280847..43281639,2 | K562 | blood: | |
6 | chr19:43297087..43297875-chr19:43423005..43423976,2 | MCF-7 | breast: | |
7 | chr19:43197626..43198528-chr19:43245881..43246809,2 | MCF-7 | breast: |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PSG1-1 | chr19:43341149-43341602 | NONHSAT066570 |
2 | lnc-PSG6-1 | chr19:43439556-43439921 | NR_073194 |
3 | lnc-PSG6-1 | chr19:43433594-43433872 | NR_073194 |
4 | lnc-PSG8-1 | chr19:43290505-43290747 | NONHSAT066567 |
5 | lnc-PSG6-1 | chr19:43441165-43441330 | NR_073194 |
6 | lnc-PSG6-1 | chr19:43429925-43430179 | NR_073194 |
7 | lnc-PSG1-1 | chr19:43349168-43349446 | NONHSAT146988 |
8 | lnc-PSG6-3 | chr19:43372253-43372507 | NONHSAT066572 |
9 | lnc-PSG1-1 | chr19:43358101-43358466 | NONHSAT066571 |
10 | lnc-PSG6-1 | chr19:43430590-43430868 | NR_073194 |
11 | lnc-PSG6-1 | chr19:43441165-43441330 | NONHSAT066574 |
12 | lnc-PSG6-1 | chr19:43428286-43428976 | NONHSAT066573 |
13 | lnc-PSG1-1 | chr19:43341149-43341534 | NONHSAT066571 |
14 | lnc-PSG1-1 | chr19:43348511-43348765 | NONHSAT146988 |
15 | lnc-PSG8-1 | chr19:43289879-43290117 | NONHSAT066567 |
16 | lnc-PSG3-1 | chr19:43256843-43257528 | NONHSAT066566 |
17 | lnc-PSG6-1 | chr19:43440309-43440647 | NONHSAT066574 |
18 | lnc-PSG1-1 | chr19:43358101-43358466 | NONHSAT146988 |
19 | lnc-PSG8-1 | chr19:43285358-43285449 | NONHSAT066567 |
20 | lnc-PSG3-1 | chr19:43258485-43260276 | NONHSAT066566 |
21 | lnc-PSG6-1 | chr19:43428284-43428976 | NR_073194 |
22 | lnc-PSG1-1 | chr19:43359708-43359870 | NONHSAT066571 |
23 | lnc-PSG6-3 | chr19:43370618-43371302 | NONHSAT066572 |
24 | lnc-PSG1-1 | chr19:43348511-43348765 | NONHSAT066571 |
25 | lnc-PSG1-1 | chr19:43343447-43343530 | NONHSAT066571 |
26 | lnc-PSG1-1 | chr19:43349168-43349446 | NONHSAT066571 |
27 | lnc-PSG1-1 | chr19:43359708-43359870 | NONHSAT146988 |
28 | lnc-PSG1-1 | chr19:43343520-43343530 | NONHSAT146988 |
29 | lnc-PSG1-1 | chr19:43343708-43343916 | NONHSAT066571 |
30 | lnc-PSG6-1 | chr19:43429925-43431729 | NONHSAT066573 |
31 | lnc-PSG6-3 | chr19:43372908-43374797 | NONHSAT066572 |
32 | lnc-PSG1-1 | chr19:43343708-43343916 | NONHSAT146988 |
No data |
No data |
Variant related genes | Relation type |
---|---|
PSG8 | TF binding region |
ENSG00000225877 | TF binding region |
PSG6 | TF binding region |
CEACAMP6 | TF binding region |
PSG1 | TF binding region |
PSG7 | TF binding region |
PSG3 | TF binding region |
PSG10P | TF binding region |
PSG8 | CpG island |
ENSG00000225877 | CpG island |
PSG6 | CpG island |
CEACAMP6 | CpG island |
PSG1 | CpG island |
PSG7 | CpG island |
PSG3 | CpG island |
PSG10P | CpG island |
ENSG00000170848 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs201068330 | chr19:43228126-43228127 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs566095700 | chr19:43228129-43228130 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs148710819 | chr19:43228154-43228155 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs540905867 | chr19:43228186-43228187 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs369138541 | chr19:43228226-43228227 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs377449269 | chr19:43228232-43228233 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs376213533 | chr19:43228261-43228262 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs73932790 | chr19:43228292-43228293 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs554769661 | chr19:43228314-43228315 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs376126407 | chr19:43228315-43228316 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs551827884 | chr19:43228337-43228338 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs145343087 | chr19:43228379-43228380 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs557619763 | chr19:43228381-43228382 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs530897988 | chr19:43228385-43228386 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs577148794 | chr19:43228454-43228455 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs8110455 | chr19:43228458-43228459 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
17 | rs139621474 | chr19:43228478-43228479 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs11668763 | chr19:43228525-43228526 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs185450943 | chr19:43228544-43228545 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs10421041 | chr19:43228549-43228550 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs540721709 | chr19:43228555-43228556 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs114835548 | chr19:43228561-43228562 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs34413662 | chr19:43228581-43228582 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs529883376 | chr19:43228636-43228637 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs371075969 | chr19:43228653-43228654 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs149720486 | chr19:43228654-43228655 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs145543237 | chr19:43228682-43228683 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs73932791 | chr19:43228707-43228708 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs567970080 | chr19:43228708-43228709 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs34120961 | chr19:43228716-43228717 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs535372816 | chr19:43228719-43228720 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs190305490 | chr19:43228742-43228743 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs8111662 | chr19:43228743-43228744 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs8110683 | chr19:43228749-43228750 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
35 | rs537632538 | chr19:43228768-43228769 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs557247441 | chr19:43228798-43228799 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs181679058 | chr19:43228823-43228824 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs375170812 | chr19:43228859-43228860 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs4802139 | chr19:43228916-43228917 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
40 | rs571696005 | chr19:43228923-43228924 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs540703943 | chr19:43228925-43228926 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs561016576 | chr19:43228936-43228937 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs574419324 | chr19:43228938-43228939 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs186689887 | chr19:43228965-43228966 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs576073607 | chr19:43228972-43228973 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs143022053 | chr19:43229014-43229015 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs542715083 | chr19:43229026-43229027 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs372425297 | chr19:43229027-43229028 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs58707411 | chr19:43229040-43229041 | Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
50 | rs555410453 | chr19:43229054-43229055 | Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Cancer | 20164919 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Prostate cancer | 18632612 | CNVD |
Autism | 22495311 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Congenital nephrotic syndrome | 18421352 | CNVD |
Astrocytoma | 17934521 | CNVD |
Leukemia | 17361228 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Breast cancer | 21858162 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
renal disease | 20603712 | CNVD |
Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Breast cancer | 21364760 | CNVD |
Invasive pancreatic ductal carcinoma | 18765526 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Chordoma | 18071362 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Bladder cancer | 21909424 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Gastric cancer | 18160780 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Basal cell lymphoma | 19029149 | CNVD |
Breast cancer | 20409316 | CNVD |
Diffuse large b-cell lymphoma | 19029149 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Lung cancer | 18438408 | CNVD |
Ovarian clear cell carcinoma | 19293255 | CNVD |
Astrocytoma | 22246337 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 21509527 | CNVD |
Cancer | 20164920 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Ependymoma | 20639864 | CNVD |
Autism | 19492091 | CNVD |
Ovarian cancer | 20800559 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 16272173 | CNVD |
Spondylocostal dysostosis | 21085971 | CNVD |
Nicotine metabolism | 21956041 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Breast cancer | 17133270 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Melanoma | 20877625 | CNVD |
Ovarian cancer | 21240255 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:43227200-43229200 | Strong transcription | Placenta | Placenta |
2 | chr19:43229200-43233600 | Weak transcription | Placenta | Placenta |
3 | chr19:43232400-43233600 | Enhancers | Brain Hippocampus Middle | brain |
4 | chr19:43232600-43233200 | Enhancers | Brain Cingulate Gyrus | brain |
5 | chr19:43232800-43233200 | Enhancers | Brain Substantia Nigra | brain |
6 | chr19:43233200-43236800 | Weak transcription | Brain Substantia Nigra | brain |
7 | chr19:43233600-43233800 | Genic enhancers | Placenta | Placenta |
8 | chr19:43233800-43234200 | Weak transcription | Placenta | Placenta |
9 | chr19:43234200-43235000 | Genic enhancers | Placenta | Placenta |
10 | chr19:43235000-43236600 | Weak transcription | Placenta | Placenta |
11 | chr19:43236600-43237600 | Genic enhancers | Placenta | Placenta |
12 | chr19:43236800-43237200 | Active TSS | Brain Substantia Nigra | brain |
13 | chr19:43237600-43238400 | Weak transcription | Placenta | Placenta |
14 | chr19:43238400-43241600 | Active TSS | Placenta | Placenta |
15 | chr19:43239000-43240400 | Enhancers | NHDF-Ad | bronchial |
16 | chr19:43239000-43242200 | Enhancers | Osteobl | bone |
17 | chr19:43239000-43242800 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
18 | chr19:43239200-43242000 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
19 | chr19:43239400-43240400 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
20 | chr19:43239400-43242000 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
21 | chr19:43239400-43242200 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
22 | chr19:43239400-43242400 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
23 | chr19:43239400-43242400 | Enhancers | HMEC | breast |
24 | chr19:43239400-43242800 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
25 | chr19:43239800-43240400 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
26 | chr19:43239800-43242000 | Enhancers | NH-A | brain |
27 | chr19:43239800-43242600 | Enhancers | NHEK | skin |
28 | chr19:43240000-43240200 | Enhancers | Foreskin Fibroblast Primary Cells skin02 | Skin |
29 | chr19:43240000-43240200 | Enhancers | HSMM | muscle |
30 | chr19:43240000-43240200 | Enhancers | NHLF | lung |
31 | chr19:43240000-43241000 | Enhancers | Muscle Satellite Cultured Cells | -- |
32 | chr19:43240000-43241200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
33 | chr19:43240000-43242000 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
34 | chr19:43240200-43241000 | Weak transcription | NHLF | lung |
35 | chr19:43240200-43241600 | Weak transcription | HSMM | muscle |
36 | chr19:43240400-43240800 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
37 | chr19:43240400-43240800 | Weak transcription | NHDF-Ad | bronchial |
38 | chr19:43240400-43241400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
39 | chr19:43240400-43241800 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
40 | chr19:43240800-43242200 | Enhancers | NHDF-Ad | bronchial |
41 | chr19:43240800-43242400 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
42 | chr19:43241000-43241400 | Weak transcription | Muscle Satellite Cultured Cells | -- |
43 | chr19:43241000-43242000 | Enhancers | NHLF | lung |
44 | chr19:43241400-43242000 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
45 | chr19:43241400-43242200 | Enhancers | Muscle Satellite Cultured Cells | -- |
46 | chr19:43241600-43242000 | Enhancers | HSMM | muscle |
47 | chr19:43241600-43243400 | Transcr. at gene 5' and 3' | Placenta | Placenta |
48 | chr19:43241800-43242200 | Enhancers | Foreskin Fibroblast Primary Cells skin02 | Skin |
49 | chr19:43242800-43243200 | Active TSS | Brain Substantia Nigra | brain |
50 | chr19:43243400-43244600 | Active TSS | Placenta | Placenta |