Variant report

Variant	nsv1062976
Chromosome Location	chr19:53205373-53274297
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1223)
CpG islands
(count:1467)
Chromatin interactive
region (count:17)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:1223 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:53238204-53238593	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:53227580-53227746	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:53228598-53228749	K562	blood:	n/a	n/a
4	ARID3A	chr19:53228340-53228382	K562	blood:	n/a	n/a
5	ARID3A	chr19:53227189-53227366	K562	blood:	n/a	n/a
6	ATF1	chr19:53219224-53219418	K562	blood:	n/a	n/a
7	ATF1	chr19:53227069-53227523	K562	blood:	n/a	n/a
8	ATF1	chr19:53233027-53233245	K562	blood:	n/a	n/a
9	ATF1	chr19:53260119-53260246	K562	blood:	n/a	n/a
10	ATF1	chr19:53238100-53238672	K562	blood:	n/a	n/a
11	ATF2	chr19:53239019-53239370	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr19:53238937-53239428	H1-hESC	embryonic stem cell:	n/a	n/a
13	ATF3	chr19:53238046-53238465	K562	blood:	n/a	n/a
14	ATF3	chr19:53228814-53229132	K562	blood:	n/a	n/a
15	BACH1	chr19:53238107-53238408	H1-hESC	embryonic stem cell:	n/a	n/a
16	BATF	chr19:53243525-53243726	GM12878	blood:	n/a	n/a
17	BATF	chr19:53245915-53246089	GM12878	blood:	n/a	chr19:53245986-53245996 chr19:53245985-53245996 chr19:53245990-53246000
18	BATF	chr19:53218901-53219396	GM12878	blood:	n/a	chr19:53219199-53219209 chr19:53219203-53219213
19	BATF	chr19:53218901-53219394	GM12878	blood:	n/a	chr19:53219199-53219209 chr19:53219203-53219213
20	BATF	chr19:53245884-53246161	GM12878	blood:	n/a	chr19:53245986-53245996 chr19:53245985-53245996 chr19:53245990-53246000
21	BCL11A	chr19:53240555-53240723	GM12878	blood:	n/a	n/a
22	BCL11A	chr19:53219022-53219347	GM12878	blood:	n/a	chr19:53219201-53219210
23	BCL11A	chr19:53238080-53238304	GM12878	blood:	n/a	n/a
24	BCL11A	chr19:53219085-53219334	GM12878	blood:	n/a	chr19:53219201-53219210
25	BCL3	chr19:53235753-53236010	GM12878	blood:	n/a	n/a
26	BCLAF1	chr19:53237957-53238447	GM12878	blood:	n/a	chr19:53238422-53238435
27	BHLHE40	chr19:53229503-53229523	K562	blood:	n/a	n/a
28	BHLHE40	chr19:53228364-53229160	K562	blood:	n/a	n/a
29	BHLHE40	chr19:53238239-53238453	GM12878	blood:	n/a	n/a
30	BHLHE40	chr19:53238124-53238500	K562	blood:	n/a	n/a
31	BHLHE40	chr19:53227179-53227448	K562	blood:	n/a	n/a
32	BRCA1	chr19:53238114-53238309	GM12878	blood:	n/a	n/a
33	BRCA1	chr19:53219929-53220101	H1-hESC	embryonic stem cell:	n/a	n/a
34	BRCA1	chr19:53238025-53238612	Hela-S3	cervix:	n/a	n/a
35	CBX3	chr19:53269789-53270224	K562	blood:	n/a	n/a
36	CBX3	chr19:53226892-53227577	K562	blood:	n/a	n/a
37	CBX3	chr19:53208757-53209318	K562	blood:	n/a	n/a
38	CBX3	chr19:53238062-53238800	K562	blood:	n/a	n/a
39	CBX3	chr19:53269115-53269526	K562	blood:	n/a	n/a
40	CBX3	chr19:53228183-53229250	K562	blood:	n/a	n/a
41	CBX3	chr19:53238334-53238591	K562	blood:	n/a	n/a
42	CCNT2	chr19:53228944-53229189	K562	blood:	n/a	n/a
43	CCNT2	chr19:53228300-53228706	K562	blood:	n/a	n/a
44	CCNT2	chr19:53237915-53238524	K562	blood:	n/a	chr19:53238372-53238381
45	CEBPB	chr19:53232623-53232823	IMR90	lung:	n/a	n/a
46	CEBPB	chr19:53251834-53252159	HepG2	liver:	n/a	chr19:53251983-53251994
47	CEBPB	chr19:53251834-53252142	H1-hESC	embryonic stem cell:	n/a	chr19:53251983-53251994
48	CEBPB	chr19:53234633-53234653	K562	blood:	n/a	n/a
49	CEBPB	chr19:53251797-53252143	IMR90	lung:	n/a	chr19:53251983-53251994
50	CEBPB	chr19:53232598-53232808	Hela-S3	cervix:	n/a	n/a

(count:1467 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53269486-53269536	HEK293	kidney:	embryo
2	chr19:53238254-53238304	HEEpiC	esophagus:	n/a
3	chr19:53238445-53238495	RPTEC	kidney:	n/a
4	chr19:53269486-53269536	HEK293	kidney:	embryo
5	chr19:53238254-53238304	HEEpiC	esophagus:	n/a
6	chr19:53238445-53238495	RPTEC	kidney:	n/a
7	chr19:53238337-53238387	CMK	blood:	n/a
8	chr19:53238492-53238542	CMK	blood:	n/a
9	chr19:53233245-53233295	SK-N-SH_RA	brain:	n/a
10	chr19:53238445-53238495	HAEpiC	amniotic membrane:	n/a
11	chr19:53233368-53233418	Jurkat	blood:	n/a
12	chr19:53233083-53233133	MCF10A-Er-Src	breast:	n/a
13	chr19:53269486-53269536	T-47D	breast:	n/a
14	chr19:53238445-53238495	SK-N-MC	brain:	n/a
15	chr19:53238254-53238304	Hela-S3	cervix:	n/a
16	chr19:53238254-53238304	HRCEpiC	kidney:	n/a
17	chr19:53239146-53239196	IMR90	lung:	fetal
18	chr19:53233368-53233418	AG10803	skin:	n/a
19	chr19:53207899-53207949	IMR90	lung:	fetal
20	chr19:53238445-53238495	Caco-2	colon:	n/a
21	chr19:53229096-53229146	AoSMC	blood vessel:	n/a
22	chr19:53237862-53237912	GM12878	blood:	n/a
23	chr19:53207899-53207949	SAEC	small airway:	n/a
24	chr19:53229096-53229146	Jurkat	blood:	n/a
25	chr19:53237862-53237912	HCF	heart:	n/a
26	chr19:53229096-53229146	AG09309	skin:	n/a
27	chr19:53233164-53233214	PFSK-1	brain:	n/a
28	chr19:53233164-53233214	HRE	kidney:	n/a
29	chr19:53238445-53238495	HepG2	liver:	n/a
30	chr19:53238434-53238484	AoSMC	blood vessel:	n/a
31	chr19:53228974-53229024	SK-N-MC	brain:	n/a
32	chr19:53269486-53269536	ovcar-3	ovarian:	n/a
33	chr19:53207899-53207949	MCF10A-Er-Src	breast:	n/a
34	chr19:53225441-53225491	HRE	kidney:	n/a
35	chr19:53238434-53238484	HL-60	blood:	n/a
36	chr19:53237645-53237695	NHBE	bronchial:	n/a
37	chr19:53233368-53233418	AoSMC	blood vessel:	n/a
38	chr19:53233083-53233133	HPAEpiC	pulmonary alveolar:	n/a
39	chr19:53207899-53207949	AG09309	skin:	n/a
40	chr19:53234126-53234176	HRE	kidney:	n/a
41	chr19:53238413-53238463	HEK293	kidney:	embryo
42	chr19:53237862-53237912	BE2_C	brain:	n/a
43	chr19:53238413-53238463	AG09309	skin:	n/a
44	chr19:53225441-53225491	BE2_C	brain:	n/a
45	chr19:53207899-53207949	HRE	kidney:	n/a
46	chr19:53233245-53233295	H1-hESC	embryonic stem cell:	embryo
47	chr19:53237862-53237912	IMR90	lung:	fetal
48	chr19:53228974-53229024	HL-60	blood:	n/a
49	chr19:53237871-53237921	BE2_C	brain:	n/a
50	chr19:53233368-53233418	SAEC	small airway:	n/a

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:53233250..53234773-chr19:53236233..53238057,2	K562	blood:
2	chr19:53215678..53217452-chr19:53219568..53222029,2	K562	blood:
3	chr19:53226674..53228672-chr19:53232730..53234940,2	K562	blood:
4	chr19:53233250..53234773-chr19:53236233..53238057,2	K562	blood:
5	chr19:53236450..53239197-chr19:53240698..53243642,2	K562	blood:
6	chr19:53236244..53237950-chr19:53242142..53244901,2	K562	blood:
7	chr19:53115970..53118193-chr19:53236786..53238588,2	K562	blood:
8	chr19:53227707..53230460-chr19:53236213..53239636,6	K562	blood:
9	chr19:53236244..53237950-chr19:53242142..53244901,2	K562	blood:
10	chr19:53215678..53217452-chr19:53219568..53222029,2	K562	blood:
11	chr19:53226674..53228672-chr19:53232730..53234940,2	K562	blood:
12	chr19:53227707..53230460-chr19:53236213..53239636,6	K562	blood:
13	chr19:53199473..53201886-chr19:53208932..53211700,2	K562	blood:
14	chr14:93214475..93215046-chr19:53237894..53238692,2	Hela-S3	cervix:
15	chr19:53227642..53230112-chr19:53236849..53239461,2	K562	blood:
16	chr19:53227642..53230112-chr19:53236849..53239461,2	K562	blood:
17	chr19:53237008..53239147-chr19:53540786..53542527,2	MCF-7	breast:

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF83-5	chr19:53226674-53227917	NONHSAT067581
2	lnc-ZNF83-5	chr19:53231983-53232084	NONHSAT067580
3	lnc-ZNF83-5	chr19:53224436-53224520	NONHSAT067580
4	lnc-ZNF83-5	chr19:53238254-53238326	NONHSAT067579
5	lnc-ZNF83-5	chr19:53238254-53238268	NONHSAT067580
6	lnc-ZNF83-3	chr19:53211674-53212084	NONHSAT067577
7	lnc-ZNF83-3	chr19:53211457-53211582	NONHSAT067577
8	lnc-ZNF83-5	chr19:53224406-53224520	NONHSAT067579
9	lnc-ZNF83-5	chr19:53231983-53232084	NONHSAT067579
10	lnc-ZNF83-5	chr19:53227124-53227242	NONHSAT067579
11	lnc-ZNF83-5	chr19:53233159-53233258	NONHSAT067580
12	lnc-ZNF83-5	chr19:53233159-53233258	NONHSAT067579

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ZNF611	hsa-miR-155-5p	chr19:53207486-53207509

Variant related genes	Relation type
ZNF611	TF binding region
ZNF611	CpG island
ENSG00000242779	chromatin interactions
ENSG00000100600	chromatin interactions
ENSG00000167766	chromatin interactions
ENSG00000213020	chromatin interactions

Extended variants
information (count: 3892 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:3892 , 50 per page) page: 1 2 3 4 5 6 7 ... 78

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs187005954	chr19:53205481-53205482	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs533282764	chr19:53205496-53205497	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs555762089	chr19:53205500-53205501	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs574247282	chr19:53205509-53205510	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs541239661	chr19:53205538-53205539	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs368865063	chr19:53205555-53205556	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs56261671	chr19:53205563-53205564	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs532865038	chr19:53205564-53205565	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs11670453	chr19:53205569-53205570	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs115280748	chr19:53205581-53205582	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs376543203	chr19:53205588-53205589	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs146113132	chr19:53205589-53205590	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs376120794	chr19:53205598-53205599	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs372955722	chr19:53205651-53205652	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs141850782	chr19:53205656-53205657	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs147259380	chr19:53205672-53205673	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs371148050	chr19:53205697-53205698	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs528364114	chr19:53205707-53205708	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs536844582	chr19:53205710-53205711	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs374489613	chr19:53205746-53205747	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs184255898	chr19:53205774-53205775	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs140826581	chr19:53205793-53205794	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs570058223	chr19:53205803-53205804	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs537070463	chr19:53205815-53205816	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs375494720	chr19:53205821-53205822	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs555696010	chr19:53205826-53205827	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs144760210	chr19:53205830-53205831	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs189311804	chr19:53205836-53205837	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs112884414	chr19:53205846-53205847	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs553196718	chr19:53205860-53205861	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs577807781	chr19:53205861-53205862	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs140533840	chr19:53205889-53205890	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs563216057	chr19:53205890-53205891	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs114114455	chr19:53205905-53205906	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs534634150	chr19:53205921-53205922	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs553038637	chr19:53205923-53205924	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs560901912	chr19:53205924-53205925	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs528401358	chr19:53205925-53205926	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs577691243	chr19:53205928-53205929	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs565109608	chr19:53205935-53205936	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs532321625	chr19:53205944-53205945	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs56360235	chr19:53205973-53205974	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs182203610	chr19:53205993-53205994	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs371020216	chr19:53206008-53206009	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs557083579	chr19:53206011-53206012	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs185487535	chr19:53206028-53206029	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs567318194	chr19:53206043-53206044	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs535024082	chr19:53206097-53206098	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs553237558	chr19:53206103-53206104	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs114743519	chr19:53206107-53206108	Weak transcription ZNF genes & repeats Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Adrenocortical carcinoma	18281524	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2188 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53194200-53207200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:53194600-53208400	Weak transcription	Hela-S3	cervix
3	chr19:53194600-53208800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr19:53194800-53207600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr19:53194800-53207600	Weak transcription	Brain Anterior Caudate	brain
6	chr19:53194800-53208400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr19:53194800-53218800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:53195000-53207800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr19:53195000-53210600	Weak transcription	Fetal Stomach	stomach
10	chr19:53195200-53207200	Weak transcription	Brain Germinal Matrix	brain
11	chr19:53195200-53207400	Weak transcription	Dnd41	blood
12	chr19:53195200-53207800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr19:53199600-53207800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr19:53199600-53208800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr19:53199800-53207400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr19:53202800-53209000	Weak transcription	Fetal Heart	heart
17	chr19:53202800-53217400	ZNF genes & repeats	Liver	Liver
18	chr19:53203200-53207600	Enhancers	HepG2	liver
19	chr19:53203200-53208200	Weak transcription	Left Ventricle	heart
20	chr19:53203400-53207400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr19:53203400-53207800	Weak transcription	Fetal Lung	lung
22	chr19:53203600-53207800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr19:53203600-53207800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr19:53203800-53208000	Weak transcription	Fetal Muscle Leg	muscle
25	chr19:53204200-53205400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr19:53204200-53208200	Weak transcription	Colon Smooth Muscle	Colon
27	chr19:53204400-53205400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr19:53204400-53206600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr19:53204400-53207600	Weak transcription	Adipose Nuclei	Adipose
30	chr19:53204400-53207800	Weak transcription	Brain Substantia Nigra	brain
31	chr19:53204400-53207800	Weak transcription	Fetal Kidney	kidney
32	chr19:53204600-53206000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr19:53204600-53207200	Weak transcription	Placenta	Placenta
34	chr19:53204800-53208200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr19:53205000-53205400	Strong transcription	Fetal Brain Female	brain
36	chr19:53205200-53205600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr19:53205200-53205800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr19:53205200-53206400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr19:53205200-53207600	Weak transcription	Fetal Brain Male	brain
40	chr19:53205200-53208000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr19:53205400-53205600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr19:53205400-53205800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr19:53205400-53207600	Weak transcription	Fetal Brain Female	brain
44	chr19:53205400-53208000	Weak transcription	Brain Angular Gyrus	brain
45	chr19:53205400-53208000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr19:53205600-53206400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr19:53205600-53207200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr19:53205600-53217400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
49	chr19:53205800-53206600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr19:53205800-53206800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links