Variant report

Variant	nsv1065198
Chromosome Location	chr20:25959162-26305567
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4400)
CpG islands
(count:1526)
Chromatin interactive
region (count:66)
LncRNA
region (count:220)
Mature miRNA
region (count: 1)
miRNA target
sites (count:0)

(count:4400 , 50 per page) page: 1 2 3 4 5 6 7 ... 88

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:26188670-26190654	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:25989422-25989527	HepG2	liver:	n/a	n/a
3	ARID3A	chr20:26188665-26190661	K562	blood:	n/a	n/a
4	ATF1	chr20:26201702-26201703	K562	blood:	n/a	n/a
5	ATF1	chr20:26202019-26202231	K562	blood:	n/a	n/a
6	ATF1	chr20:26204024-26204365	K562	blood:	n/a	n/a
7	ATF1	chr20:26293066-26293834	K562	blood:	n/a	n/a
8	ATF1	chr20:26207076-26207177	K562	blood:	n/a	n/a
9	ATF1	chr20:26207700-26208236	K562	blood:	n/a	n/a
10	ATF1	chr20:26212000-26212002	K562	blood:	n/a	n/a
11	ATF1	chr20:26210887-26211336	K562	blood:	n/a	n/a
12	ATF1	chr20:26302622-26302991	K562	blood:	n/a	n/a
13	ATF1	chr20:26300230-26300430	K562	blood:	n/a	n/a
14	ATF1	chr20:26206579-26206689	K562	blood:	n/a	n/a
15	ATF1	chr20:26209393-26209538	K562	blood:	n/a	n/a
16	ATF1	chr20:26200807-26200973	K562	blood:	n/a	n/a
17	ATF1	chr20:26210425-26210440	K562	blood:	n/a	n/a
18	ATF1	chr20:26269527-26269727	K562	blood:	n/a	n/a
19	ATF1	chr20:26202933-26202936	K562	blood:	n/a	n/a
20	ATF1	chr20:26213000-26213056	K562	blood:	n/a	n/a
21	ATF1	chr20:26259878-26260247	K562	blood:	n/a	n/a
22	ATF2	chr20:26188742-26189499	GM12878	blood:	n/a	n/a
23	ATF2	chr20:26188598-26189527	H1-hESC	embryonic stem cell:	n/a	n/a
24	ATF2	chr20:26189688-26190460	GM12878	blood:	n/a	n/a
25	ATF2	chr20:26188658-26189437	GM12878	blood:	n/a	n/a
26	ATF2	chr20:26189566-26190667	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF2	chr20:25990276-25990617	GM12878	blood:	n/a	n/a
28	ATF2	chr20:26189559-26190696	H1-hESC	embryonic stem cell:	n/a	n/a
29	ATF2	chr20:26189705-26190319	GM12878	blood:	n/a	n/a
30	ATF2	chr20:26190350-26190549	GM12878	blood:	n/a	n/a
31	ATF2	chr20:26188609-26189520	H1-hESC	embryonic stem cell:	n/a	n/a
32	ATF3	chr20:26188662-26189535	H1-hESC	embryonic stem cell:	n/a	n/a
33	ATF3	chr20:26188697-26190655	K562	blood:	n/a	chr20:26190344-26190352
34	ATF3	chr20:26189712-26190314	K562	blood:	n/a	n/a
35	ATF3	chr20:26189707-26190649	H1-hESC	embryonic stem cell:	n/a	chr20:26190344-26190352
36	ATF3	chr20:26188677-26189497	HepG2	liver:	n/a	n/a
37	ATF3	chr20:26190389-26190519	K562	blood:	n/a	n/a
38	ATF3	chr20:26189743-26190295	GM12878	blood:	n/a	n/a
39	ATF3	chr20:26190355-26190540	HepG2	liver:	n/a	n/a
40	ATF3	chr20:26189747-26190340	K562	blood:	n/a	n/a
41	ATF3	chr20:26189724-26190322	HepG2	liver:	n/a	n/a
42	ATF3	chr20:26189239-26189386	K562	blood:	n/a	n/a
43	ATF3	chr20:26188643-26190671	A549	lung:	n/a	chr20:26190344-26190352
44	ATF3	chr20:26188754-26189204	K562	blood:	n/a	n/a
45	ATF3	chr20:26188637-26190747	A549	lung:	n/a	chr20:26190344-26190352
46	ATF3	chr20:26189549-26190567	H1-hESC	embryonic stem cell:	n/a	chr20:26190344-26190352
47	ATF3	chr20:26188778-26189204	GM12878	blood:	n/a	n/a
48	BACH1	chr20:26277375-26277379	K562	blood:	n/a	n/a
49	BACH1	chr20:26203731-26203928	K562	blood:	n/a	n/a
50	BACH1	chr20:26268242-26268311	K562	blood:	n/a	n/a

(count:1526 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:26190328-26190378	Jurkat	blood:	n/a
2	chr20:26190328-26190378	Jurkat	blood:	n/a
3	chr20:26186545-26186595	HAEpiC	amniotic membrane:	n/a
4	chr20:25989032-25989082	MCF10A-Er-Src	breast:	n/a
5	chr20:26186908-26186958	PANC-1	pancreas:	n/a
6	chr20:26188919-26188969	HCT-116	colon:	n/a
7	chr20:26188919-26188969	ECC-1	luminal epithelium:	n/a
8	chr20:26062310-26062360	LNCaP	prostate:	n/a
9	chr20:25988587-25988637	HepG2	liver:	n/a
10	chr20:25989032-25989082	NH-A	brain:	n/a
11	chr20:25989674-25989724	AG10803	skin:	n/a
12	chr20:25989032-25989082	NHDF-neo	bronchial:	n/a
13	chr20:26188963-26189013	AG10803	skin:	n/a
14	chr20:25989775-25989825	HAEpiC	amniotic membrane:	n/a
15	chr20:25989674-25989724	IMR90	lung:	fetal
16	chr20:26189240-26189290	SKMC	muscle:	n/a
17	chr20:26186545-26186595	MCF-7	breast:	n/a
18	chr20:26190328-26190378	HRCEpiC	kidney:	n/a
19	chr20:26188963-26189013	HUVEC	blood vessel:	n/a
20	chr20:25991114-25991164	MCF-7	breast:	n/a
21	chr20:26189665-26189715	HMEC	breast:	n/a
22	chr20:26189240-26189290	HIPEpiC	eye:	n/a
23	chr20:26062310-26062360	MCF-7	breast:	n/a
24	chr20:26188943-26188993	HCT-116	colon:	n/a
25	chr20:26189510-26189560	AG10803	skin:	n/a
26	chr20:26192541-26192591	Jurkat	blood:	n/a
27	chr20:26188976-26189026	BJ	skin:	n/a
28	chr20:26188997-26189047	GM12891	blood:	n/a
29	chr20:25989674-25989724	Caco-2	colon:	n/a
30	chr20:26188943-26188993	LNCaP	prostate:	n/a
31	chr20:26188919-26188969	HAEpiC	amniotic membrane:	n/a
32	chr20:25990680-25990730	NHDF-neo	bronchial:	n/a
33	chr20:26188943-26188993	GM06990	blood:	n/a
34	chr20:25989775-25989825	K562	blood:	n/a
35	chr20:26189240-26189290	BJ	skin:	n/a
36	chr20:26188943-26188993	HCPEpiC	choroid plexus:	n/a
37	chr20:26189510-26189560	SK-N-MC	brain:	n/a
38	chr20:25988587-25988637	SK-N-SH_RA	brain:	n/a
39	chr20:26188963-26189013	RPTEC	kidney:	n/a
40	chr20:26188639-26188689	NHDF-neo	bronchial:	n/a
41	chr20:25988266-25988316	HEEpiC	esophagus:	n/a
42	chr20:26188639-26188689	NHBE	bronchial:	n/a
43	chr20:26189240-26189290	HPAEpiC	pulmonary alveolar:	n/a
44	chr20:26189510-26189560	HIPEpiC	eye:	n/a
45	chr20:26190354-26190404	HEK293	kidney:	embryo
46	chr20:26188639-26188689	Caco-2	colon:	n/a
47	chr20:26190354-26190404	HNPCEpiC	eye:	n/a
48	chr20:26188976-26189026	GM12892	blood:	n/a
49	chr20:25989674-25989724	SK-N-SH_RA	brain:	n/a
50	chr20:26188639-26188689	ProgFib	skin:	n/a

(count:66 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr20:26188251..26190477-chr21:9825050..9827838,61	MCF-7	breast:
2	chr20:26188395..26190565-chr6:74228700..74231505,2	MCF-7	breast:
3	chr12:20703907..20704890-chr20:26188413..26189402,2	MCF-7	breast:
4	chr20:26192921..26195094-chr20:26197740..26199404,2	K562	blood:
5	chr20:26189053..26190595-chr8:67624606..67626126,2	MCF-7	breast:
6	chr20:26206073..26206971-chr3:75991464..75992265,2	MCF-7	breast:
7	chr2:133014709..133015762-chr20:26188882..26190143,12	MCF-7	breast:
8	chr2:75937839..75938339-chr20:26189314..26190135,2	MCF-7	breast:
9	chr13:63647679..63650483-chr20:26148365..26151073,2	K562	blood:
10	chr20:26199924..26201625-chr3:75995563..75997738,2	MCF-7	breast:
11	chr20:26187251..26191978-chr21:9823998..9829001,56	K562	blood:
12	chr20:26188275..26190975-chr21:9824996..9827903,45	K562	blood:
13	chr12:20704427..20705972-chr20:26188595..26190576,2	MCF-7	breast:
14	chr2:133014681..133015764-chr20:26189070..26190458,26	MCF-7	breast:
15	chr16:33961300..33961956-chr20:26188840..26189578,6	MCF-7	breast:
16	chr2:133014633..133016102-chr20:26188637..26190095,17	MCF-7	breast:
17	chr20:26188947..26190833-chr6:26156720..26159562,2	MCF-7	breast:
18	chr16:33959793..33967555-chr20:26187372..26191632,15	K562	blood:
19	chr20:26188275..26190944-chr21:9825018..9827152,38	MCF-7	breast:
20	chr2:133014718..133015708-chr20:26189240..26189953,2	MCF-7	breast:
21	chr2:133011277..133016757-chr20:26187363..26191986,20	K562	blood:
22	chr20:26188413..26189362-chr8:101964386..101965001,2	MCF-7	breast:
23	chr20:26190004..26190733-chr8:67687205..67687727,4	MCF-7	breast:
24	chr20:26130778..26134198-chr7:57619861..57623955,5	K562	blood:
25	chr16:33960878..33961871-chr20:26188853..26189656,7	MCF-7	breast:
26	chr20:26131190..26134756-chr7:57619861..57622623,3	K562	blood:
27	chr16:33961325..33966193-chr20:26187372..26191793,13	K562	blood:
28	chr13:63637188..63639152-chr20:26145559..26148373,3	K562	blood:
29	chr20:26208071..26209607-chr3:75987301..75988916,2	K562	blood:
30	chr16:33964537..33965670-chr20:26188912..26190067,3	K562	blood:
31	chr2:133013729..133016735-chr20:26188305..26190826,4	MCF-7	breast:
32	chr20:26187273..26191752-chr21:9823988..9828758,49	MCF-7	breast:
33	chr2:133015211..133015762-chr20:26189170..26190019,2	MCF-7	breast:
34	chr20:26188254..26190671-chr21:9824984..9827890,92	MCF-7	breast:
35	chr16:33961286..33962956-chr20:26188880..26190564,2	MCF-7	breast:
36	chr20:26188271..26189555-chr21:9824988..9827433,58	MCF-7	breast:
37	chr17:73256462..73259302-chr20:26189013..26191624,2	MCF-7	breast:
38	chr20:26187252..26191975-chr21:9823984..9828995,56	MCF-7	breast:
39	chr2:133014727..133015757-chr20:26189158..26190413,12	MCF-7	breast:
40	chr1:109756113..109757974-chr20:26187645..26190102,2	MCF-7	breast:
41	chr13:63647812..63648534-chr20:26148535..26149113,2	MCF-7	breast:
42	chr2:133013667..133017081-chr20:26187658..26190834,11	MCF-7	breast:
43	chr20:26201915..26204776-chr3:75992954..75996738,5	MCF-7	breast:
44	chr20:26187350..26191964-chr21:9824053..9828992,54	K562	blood:
45	chr13:63637281..63639152-chr20:26145559..26147940,2	K562	blood:
46	chr20:26188341..26189368-chr21:9825099..9826092,4	MCF-7	breast:
47	chr16:33961305..33961892-chr20:26188839..26189533,2	MCF-7	breast:
48	chr20:26189322..26189965-chr3:72495919..72496919,2	MCF-7	breast:
49	chr19:56154889..56155389-chr20:26189706..26190477,2	K562	blood:
50	chr12:127649141..127652032-chr20:26188488..26190208,4	K562	blood:

(count:220 , 50 per page) page: 1 2 3 4 5

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182B-6	chr20:26188781-26188874	ENSG00000227195.4
2	lnc-FAM182B-2	chr20:25982850-25982935	XLOC_013711
3	lnc-FAM182B-6	chr20:26167655-26168473	ENSG00000227195
4	lnc-FAM182B-6	chr20:26180085-26180159	ENSG00000227195.4
5	lnc-FAM182B-6	chr20:26167556-26168177	ENSG00000227195.4
6	lnc-FAM182A-4	chr20:26054406-26054505	ENSG00000125804.9
7	lnc-FAM182B-6	chr20:26180085-26180159	ENSG00000227195.4
8	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
9	lnc-FAM182B-6	chr20:26168268-26168473	ENSG00000227195.4
10	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
11	lnc-FAM182B-6	chr20:26167655-26168473	ENSG00000227195
12	lnc-FAM182B-6	chr20:26174934-26175080	ENSG00000227195.4
13	lnc-FAM182B-6	chr20:26168268-26168473	ENSG00000227195.4
14	lnc-FAM182B-6	chr20:26180085-26180159	ENSG00000227195.4
15	lnc-FAM182B-6	chr20:26189783-26189882	ENSG00000227195.4
16	lnc-FAM182B-6	chr20:26168268-26168473	ENSG00000227195.4
17	lnc-FAM182B-6	chr20:26168475-26168735	ENSG00000227195.4
18	lnc-FAM182A-4	chr20:26072148-26072255	ENSG00000125804.9
19	lnc-FAM182A-6	chr20:26001272-26001320	NONHSAT147161
20	lnc-FAM182A-4	chr20:26038034-26038238	ENSG00000125804.9
21	lnc-FAM182B-6	chr20:26172429-26172497	ENSG00000227195.4
22	lnc-FAM182B-6	chr20:26231899-26232162	ENSG00000227195.4
23	lnc-FAM182A-4	chr20:26047620-26047810	ENSG00000125804.9
24	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
25	lnc-FAM182B-6	chr20:26189900-26190098	ENSG00000227195.4
26	lnc-FAM182B-6	chr20:26189900-26189978	ENSG00000227195.4
27	lnc-FAM182B-6	chr20:26190379-26190480	ENSG00000227195.4
28	lnc-FAM182B-6	chr20:26174934-26175080	ENSG00000227195.4
29	lnc-FAM182B-6	chr20:26180832-26180952	ENSG00000227195.4
30	lnc-FAM182A-6	chr20:26002406-26002505	ucscGeneNc_uc010gdq_1
31	lnc-FAM182A-6	chr20:25999468-25999548	NONHSAT147161
32	lnc-FAM182B-6	chr20:26188939-26189080	ENSG00000227195.4
33	lnc-FAM182B-6	chr20:26231899-26232141	ENSG00000227195.4
34	lnc-FAM182B-3	chr20:25990891-25991167	XLOC_013712
35	lnc-FAM182A-4	chr20:26049553-26049796	ENSG00000125804.9
36	lnc-FAM182B-6	chr20:26168268-26168473	ENSG00000227195.4
37	lnc-FAM182A-4	chr20:26049573-26049840	ENSG00000125804.9
38	lnc-FAM182B-6	chr20:26172429-26172532	ENSG00000227195.4
39	lnc-FAM182B-6	chr20:26189501-26189527	ENSG00000227195
40	lnc-FAM182B-6	chr20:26170599-26170755	ENSG00000227195.4
41	lnc-FAM182B-6	chr20:26167632-26168219	XLOC_013715
42	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
43	lnc-FAM182B-6	chr20:26168389-26168714	ENSG00000227195.4
44	lnc-FAM182B-6	chr20:26168346-26168473	ENSG00000227195.4
45	lnc-FAM182B-6	chr20:26189783-26189825	ENSG00000227195.4
46	lnc-FAM182B-2	chr20:25982172-25982528	XLOC_013711
47	lnc-FAM182B-6	chr20:26172769-26172868	XLOC_013715
48	lnc-FAM182B-6	chr20:26172307-26172399	ENSG00000227195.4
49	lnc-FAM182A-2	chr20:26171625-26171691	XLOC_013504
50	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195

miRNA name	Chromosome Location	mirBase accession
hsa-miR-663a	chr20:26188879-26188900	MIMAT0003326

No data

Variant related genes	Relation type
ENSG00000230440	TF binding region
ENSG00000231081	TF binding region
ENSG00000204556	TF binding region
ENSG00000238129	TF binding region
FAM182A	TF binding region
MIR663A	TF binding region
NCOR1P1	TF binding region
ENSG00000230440	CpG island
ENSG00000231081	CpG island
ENSG00000204556	CpG island
ENSG00000238129	CpG island
FAM182A	CpG island
MIR663A	CpG island
NCOR1P1	CpG island
ENSG00000031698	chromatin interactions
ENSG00000074964	chromatin interactions
ENSG00000171425	chromatin interactions
ENSG00000221288	chromatin interactions
ENSG00000156508	chromatin interactions
ENSG00000104205	chromatin interactions
ENSG00000188130	chromatin interactions
ENSG00000207986	chromatin interactions
ENSG00000256642	chromatin interactions
ENSG00000163602	chromatin interactions
ENSG00000256663	chromatin interactions
ENSG00000005436	chromatin interactions
ENSG00000164924	chromatin interactions
ENSG00000163046	chromatin interactions
ENSG00000158373	chromatin interactions
ENSG00000264063	chromatin interactions
ENSG00000230102	chromatin interactions
ENSG00000239776	chromatin interactions
ENSG00000125445	chromatin interactions
ENSG00000200434	chromatin interactions
ENSG00000264462	chromatin interactions
ENSG00000125447	chromatin interactions
ENSG00000263970	chromatin interactions
JUNB	Mature miRNA region
TCEAL1	Mature miRNA region
JUND	Mature miRNA region
CDK1	Mature miRNA region
HSPG2	Mature miRNA region
NXT2	miRNA target sites
MUC17	miRNA target sites
SLC16A1	miRNA target sites
LIMCH1	miRNA target sites

Extended variants
information (count: 12287 )
Associated
traits (count: 49 )

Variant overlapped rSNPs/rCNVs (count:12287 , 50 per page) page: 1 2 3 4 5 6 7 ... 246

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4815493	chr20:25959162-25959163	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs568784581	chr20:25959165-25959166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs138843052	chr20:25959189-25959190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs118144580	chr20:25959253-25959254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs113685544	chr20:25959281-25959282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs557704880	chr20:25959282-25959283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs4815494	chr20:25959298-25959299	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs139752420	chr20:25959300-25959301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs187570007	chr20:25959370-25959371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs534076364	chr20:25959448-25959449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs143068372	chr20:25959470-25959471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs562977091	chr20:25959473-25959474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs531450281	chr20:25959478-25959479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs146107771	chr20:25959479-25959480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs191904445	chr20:25959481-25959482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs574089680	chr20:25959496-25959497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs527558388	chr20:25959547-25959548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs547433427	chr20:25959573-25959574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs570388959	chr20:25959592-25959593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs539398323	chr20:25959594-25959595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs556033368	chr20:25959625-25959626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs4813595	chr20:25959716-25959717	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs556916419	chr20:25959728-25959729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs148775993	chr20:25959741-25959742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs569566003	chr20:25959743-25959744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs199943423	chr20:25959773-25959774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs574814418	chr20:25959809-25959810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs150953302	chr20:25959818-25959819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs578256739	chr20:25959881-25959882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs554026606	chr20:25959895-25959896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139541599	chr20:25959932-25959933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs546173486	chr20:25959954-25959955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs183811741	chr20:25959983-25959984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs576438153	chr20:25959986-25959987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs188331596	chr20:25959995-25959996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190421029	chr20:25959996-25959997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs4813596	chr20:25960007-25960008	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs547743748	chr20:25960060-25960061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs182685513	chr20:25960116-25960117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs532829875	chr20:25960117-25960118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs549709925	chr20:25960132-25960133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs6107119	chr20:25960135-25960136	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs187005214	chr20:25960153-25960154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs112697103	chr20:25960174-25960175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111976959	chr20:25960179-25960180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs548388720	chr20:25960208-25960209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs4813597	chr20:25960234-25960235	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs4467345	chr20:25960249-25960250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs13039394	chr20:25960274-25960275	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs554212407	chr20:25960322-25960323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:49)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Breast cancer	22522925	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:1378 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25957600-25964200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr20:25961000-25961400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr20:25964200-25964400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr20:25964200-25965400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr20:25964400-25965400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr20:25965000-25965600	Enhancers	Fetal Stomach	stomach
7	chr20:25965000-25968600	Active TSS	Brain Germinal Matrix	brain
8	chr20:25965200-25965800	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr20:25965200-25966600	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr20:25965200-25966600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr20:25965200-25966800	Active TSS	Fetal Brain Female	brain
12	chr20:25965400-25965600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr20:25965400-25965600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
14	chr20:25965400-25965600	Active TSS	Fetal Muscle Trunk	muscle
15	chr20:25965400-25965600	Bivalent Enhancer	Placenta	Placenta
16	chr20:25965400-25965800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr20:25965400-25965800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr20:25965400-25965800	Active TSS	Muscle Satellite Cultured Cells	--
19	chr20:25965400-25966000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr20:25965400-25966000	Active TSS	Left Ventricle	heart
21	chr20:25965400-25966000	Active TSS	Ovary	ovary
22	chr20:25965400-25966000	Active TSS	Psoas Muscle	Psoas
23	chr20:25965400-25966000	Active TSS	HSMM	muscle
24	chr20:25965400-25966000	Active TSS	NH-A	brain
25	chr20:25965400-25966000	Active TSS	Osteobl	bone
26	chr20:25965400-25966200	Active TSS	Primary T cells fromperipheralblood	blood
27	chr20:25965400-25966200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr20:25965400-25966200	Active TSS	Colon Smooth Muscle	Colon
29	chr20:25965400-25966200	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr20:25965400-25966200	Active TSS	Right Ventricle	heart
31	chr20:25965400-25966200	Active TSS	Stomach Smooth Muscle	stomach
32	chr20:25965400-25966200	Active TSS	Thymus	Thymus
33	chr20:25965400-25966400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr20:25965400-25966400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr20:25965400-25966400	Active TSS	Brain Anterior Caudate	brain
36	chr20:25965400-25966400	Active TSS	Brain Hippocampus Middle	brain
37	chr20:25965400-25966400	Active TSS	Brain Substantia Nigra	brain
38	chr20:25965400-25966600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr20:25965400-25966800	Active TSS	Brain Cingulate Gyrus	brain
40	chr20:25965600-25965800	Enhancers	Esophagus	oesophagus
41	chr20:25965600-25965800	Active TSS	Fetal Stomach	stomach
42	chr20:25965600-25965800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr20:25965600-25966000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr20:25965600-25966000	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr20:25965600-25966000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr20:25965600-25966000	Active TSS	Aorta	Aorta
47	chr20:25965600-25966000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr20:25965600-25966000	Flanking Active TSS	Fetal Muscle Trunk	muscle
49	chr20:25965600-25966000	Flanking Bivalent TSS/Enh	Placenta	Placenta
50	chr20:25965600-25966000	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links