Variant report

Variant	nsv1283
Chromosome Location	chr14:56120059-56164729
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:215)
CpG islands
(count:122)
Chromatin interactive
region (count:27)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:215 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr14:56131774-56132158	GM12878	blood:	n/a	n/a
2	BATF	chr14:56131780-56132130	GM12878	blood:	n/a	chr14:56131921-56131930
3	BATF	chr14:56131730-56132108	GM12878	blood:	n/a	chr14:56131921-56131930
4	BCL11A	chr14:56131816-56132106	GM12878	blood:	n/a	n/a
5	BHLHE40	chr14:56131219-56131251	HepG2	liver:	n/a	n/a
6	CEBPB	chr14:56126681-56126897	HepG2	liver:	n/a	chr14:56126760-56126769 chr14:56126758-56126769
7	CEBPB	chr14:56143681-56143998	IMR90	lung:	n/a	chr14:56143854-56143863 chr14:56143853-56143864 chr14:56143852-56143863 chr14:56143852-56143865
8	CEBPB	chr14:56143754-56143928	H1-hESC	embryonic stem cell:	n/a	chr14:56143854-56143863 chr14:56143853-56143864 chr14:56143852-56143863 chr14:56143852-56143865
9	CEBPB	chr14:56143716-56143976	A549	lung:	n/a	chr14:56143854-56143863 chr14:56143853-56143864 chr14:56143852-56143863 chr14:56143852-56143865
10	CEBPB	chr14:56143724-56143964	K562	blood:	n/a	chr14:56143854-56143863 chr14:56143853-56143864 chr14:56143852-56143863 chr14:56143852-56143865
11	CEBPB	chr14:56143792-56143983	Hela-S3	cervix:	n/a	chr14:56143854-56143863 chr14:56143853-56143864 chr14:56143852-56143863 chr14:56143852-56143865
12	CEBPB	chr14:56152014-56152327	IMR90	lung:	n/a	n/a
13	CEBPB	chr14:56143674-56144007	HepG2	liver:	n/a	chr14:56143854-56143863 chr14:56143853-56143864 chr14:56143852-56143863 chr14:56143852-56143865
14	CTCF	chr14:56142300-56142450	HepG2	liver:	n/a	n/a
15	CTCF	chr14:56160671-56160688	GM10266	blood:	n/a	n/a
16	CTCF	chr14:56131340-56131490	A549	lung:	n/a	n/a
17	CTCF	chr14:56157040-56157190	AG09319	gingival:	n/a	n/a
18	CTCF	chr14:56157340-56157490	HRE	kidney:	n/a	n/a
19	CTCF	chr14:56131300-56131450	HPAF	blood vessel:	n/a	n/a
20	CTCF	chr14:56157349-56157389	A549	lung:	n/a	n/a
21	CTCF	chr14:56157345-56157399	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr14:56157320-56157470	A549	lung:	n/a	n/a
23	CTCF	chr14:56160397-56160462	MCF-7	breast:	n/a	n/a
24	CTCF	chr14:56131332-56131503	GM12878	blood:	n/a	n/a
25	CTCF	chr14:56131180-56131330	HVMF	connective:	n/a	n/a
26	CTCF	chr14:56160640-56160790	A549	lung:	n/a	n/a
27	CTCF	chr14:56157340-56157490	AG09319	gingival:	n/a	n/a
28	CTCF	chr14:56131300-56131450	HMF	breast:	n/a	n/a
29	CTCF	chr14:56157300-56157450	AG09319	gingival:	n/a	n/a
30	CTCF	chr14:56163240-56163390	Caco-2	colon:	n/a	n/a
31	CUX1	chr14:56150357-56150389	GM12878	blood:	n/a	n/a
32	E2F4	chr14:56139878-56140199	MCF10A-Er-Src	breast:	n/a	n/a
33	E2F4	chr14:56127145-56127413	MCF10A-Er-Src	breast:	n/a	n/a
34	E2F4	chr14:56131882-56132029	MCF10A-Er-Src	breast:	n/a	n/a
35	E2F4	chr14:56150881-56151022	MCF10A-Er-Src	breast:	n/a	n/a
36	EBF1	chr14:56131777-56132071	GM12878	blood:	n/a	n/a
37	EBF1	chr14:56157283-56157652	GM12878	blood:	n/a	n/a
38	EP300	chr14:56131804-56132190	GM12878	blood:	n/a	n/a
39	EP300	chr14:56130269-56130440	K562	blood:	n/a	n/a
40	EP300	chr14:56131858-56132119	GM12878	blood:	n/a	n/a
41	EP300	chr14:56164686-56165407	A549	lung:	n/a	n/a
42	EP300	chr14:56133743-56133862	K562	blood:	n/a	n/a
43	FAM48A	chr14:56138363-56138431	GM12878	blood:	n/a	n/a
44	FOS	chr14:56155425-56155537	MCF10A-Er-Src	breast:	n/a	chr14:56155479-56155490
45	FOS	chr14:56155467-56155650	MCF10A-Er-Src	breast:	n/a	chr14:56155479-56155490
46	FOS	chr14:56139854-56139948	MCF10A-Er-Src	breast:	n/a	n/a
47	FOS	chr14:56138495-56138605	MCF10A-Er-Src	breast:	n/a	n/a
48	FOS	chr14:56155304-56155850	HUVEC	blood vessel:	n/a	chr14:56155479-56155490
49	FOS	chr14:56156464-56157247	HUVEC	blood vessel:	n/a	n/a
50	FOSL2	chr14:56153291-56154020	HepG2	liver:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:56157197-56157247	K562	blood:	n/a
2	chr14:56157197-56157247	AG04450	lung:	fetal
3	chr14:56151250-56151300	HMEC	breast:	n/a
4	chr14:56151250-56151300	NH-A	brain:	n/a
5	chr14:56151250-56151300	SK-N-SH_RA	brain:	n/a
6	chr14:56157197-56157247	PANC-1	pancreas:	n/a
7	chr14:56151250-56151300	HCPEpiC	choroid plexus:	n/a
8	chr14:56151250-56151300	U87	brain:	n/a
9	chr14:56157197-56157247	HepG2	liver:	n/a
10	chr14:56151250-56151300	AG04450	lung:	fetal
11	chr14:56157197-56157247	SK-N-MC	brain:	n/a
12	chr14:56157197-56157247	IMR90	lung:	fetal
13	chr14:56151250-56151300	CMK	blood:	n/a
14	chr14:56157197-56157247	AoSMC	blood vessel:	n/a
15	chr14:56151250-56151300	PANC-1	pancreas:	n/a
16	chr14:56151250-56151300	A549	lung:	n/a
17	chr14:56157197-56157247	A549	lung:	n/a
18	chr14:56151250-56151300	ECC-1	luminal epithelium:	n/a
19	chr14:56151250-56151300	AoSMC	blood vessel:	n/a
20	chr14:56157197-56157247	RPTEC	kidney:	n/a
21	chr14:56157197-56157247	ECC-1	luminal epithelium:	n/a
22	chr14:56151250-56151300	HCT-116	colon:	n/a
23	chr14:56151250-56151300	Jurkat	blood:	n/a
24	chr14:56157197-56157247	HMEC	breast:	n/a
25	chr14:56151250-56151300	HRPEpiC	eye:	n/a
26	chr14:56151250-56151300	SK-N-MC	brain:	n/a
27	chr14:56157197-56157247	NH-A	brain:	n/a
28	chr14:56151250-56151300	GM12878	blood:	n/a
29	chr14:56151250-56151300	LNCaP	prostate:	n/a
30	chr14:56151250-56151300	HepG2	liver:	n/a
31	chr14:56151250-56151300	RPTEC	kidney:	n/a
32	chr14:56151250-56151300	HIPEpiC	eye:	n/a
33	chr14:56157197-56157247	NHBE	bronchial:	n/a
34	chr14:56151250-56151300	BJ	skin:	n/a
35	chr14:56151250-56151300	HCM	heart:	n/a
36	chr14:56157197-56157247	LNCaP	prostate:	n/a
37	chr14:56151250-56151300	H1-hESC	embryonic stem cell:	embryo
38	chr14:56151250-56151300	HL-60	blood:	n/a
39	chr14:56151250-56151300	AG09309	skin:	n/a
40	chr14:56157197-56157247	HCPEpiC	choroid plexus:	n/a
41	chr14:56151250-56151300	ovcar-3	ovarian:	n/a
42	chr14:56157197-56157247	CMK	blood:	n/a
43	chr14:56157197-56157247	NHDF-neo	bronchial:	n/a
44	chr14:56157197-56157247	HCT-116	colon:	n/a
45	chr14:56157197-56157247	BJ	skin:	n/a
46	chr14:56151250-56151300	NHDF-neo	bronchial:	n/a
47	chr14:56157197-56157247	HNPCEpiC	eye:	n/a
48	chr14:56157197-56157247	HEEpiC	esophagus:	n/a
49	chr14:56151250-56151300	PrEC	prostate:	n/a
50	chr14:56157197-56157247	SK-N-SH_RA	brain:	n/a

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:144533498..144535527-chr14:56140284..56141806,2	K562	blood:
2	chr14:56135769..56139247-chr14:56140208..56143081,3	K562	blood:
3	chr14:56133519..56136072-chr14:56136743..56138846,2	MCF-7	breast:
4	chr14:56133519..56136072-chr14:56136743..56138846,2	MCF-7	breast:
5	chr14:56126633..56128204-chr14:56129295..56131290,2	K562	blood:
6	chr14:56123511..56126228-chr14:56130259..56133014,2	K562	blood:
7	chr14:56109854..56112064-chr14:56118999..56121625,2	K562	blood:
8	chr14:56136295..56138118-chr14:56139376..56142156,3	K562	blood:
9	chr14:56120266..56122635-chr14:56124757..56126273,2	K562	blood:
10	chr14:56120614..56122257-chr14:56126744..56128626,2	MCF-7	breast:
11	chr14:56120266..56122635-chr14:56124757..56126273,2	K562	blood:
12	chr14:56102256..56103857-chr14:56152714..56154637,2	K562	blood:
13	chr14:56135769..56139247-chr14:56140208..56143081,3	K562	blood:
14	chr14:56127727..56129684-chr14:56130205..56132063,2	MCF-7	breast:
15	chr14:56149406..56151839-chr14:56154721..56157088,2	K562	blood:
16	chr14:56145095..56147248-chr14:56151830..56154443,3	K562	blood:
17	chr14:56135952..56138303-chr14:56139128..56140660,2	MCF-7	breast:
18	chr14:56123511..56126228-chr14:56130259..56133014,2	K562	blood:
19	chr14:56149406..56151839-chr14:56154721..56157088,2	K562	blood:
20	chr14:56118646..56123000-chr14:56124614..56127350,4	MCF-7	breast:
21	chr14:56136295..56138118-chr14:56139376..56142156,3	K562	blood:
22	chr14:56152134..56154942-chr14:56705477..56707691,2	K562	blood:
23	chr1:144531660..144535087-chr14:56140285..56143287,3	K562	blood:
24	chr14:56135952..56138303-chr14:56139128..56140660,2	MCF-7	breast:
25	chr14:56145481..56148002-chr14:56152406..56155008,3	K562	blood:
26	chr14:56113692..56116512-chr14:56123800..56126287,2	MCF-7	breast:
27	chr14:56126633..56128204-chr14:56129295..56131290,2	K562	blood:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBXO34-2	chr14:56126384-56126421	NONHSAT037019
2	lnc-FBXO34-2	chr14:56128240-56128575	NONHSAT037019
3	lnc-FBXO34-2	chr14:56122760-56123065	NONHSAT037017
4	lnc-FBXO34-2	chr14:56139647-56141022	NONHSAT037020
5	lnc-FBXO34-2	chr14:56139348-56139419	NONHSAT037020
6	lnc-FBXO34-2	chr14:56138580-56138595	NONHSAT037020
7	lnc-FBXO34-2	chr14:56120277-56120314	NONHSAT037017
8	lnc-FBXO34-2	chr14:56122818-56122850	NONHSAT037019
9	lnc-FBXO34-2	chr14:56125264-56125332	NONHSAT037019

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	KTN1	hsa-miR-34a-5p	chr14:56151185-56151206

Variant related genes	Relation type
KTN1	TF binding region
KTN1	CpG island
ENSG00000201699	chromatin interactions
ENSG00000126777	chromatin interactions

Extended variants
information (count: 1825 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:1825 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558350781	chr14:56120061-56120062	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs532462675	chr14:56120090-56120091	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs115959124	chr14:56120176-56120177	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs3736876	chr14:56120178-56120179	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs574670025	chr14:56120183-56120184	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs368578094	chr14:56120184-56120185	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs541462871	chr14:56120188-56120189	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs560394308	chr14:56120209-56120210	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs563233738	chr14:56120227-56120228	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs530637127	chr14:56120238-56120239	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs369814243	chr14:56120250-56120251	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs373796242	chr14:56120314-56120315	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
13	rs545887203	chr14:56120333-56120334	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs201831734	chr14:56120355-56120356	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs528714646	chr14:56120404-56120405	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs571654628	chr14:56120407-56120408	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs533937030	chr14:56120442-56120443	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs529547141	chr14:56120446-56120447	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs373948358	chr14:56120447-56120448	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs376855978	chr14:56120460-56120461	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs550709909	chr14:56120508-56120509	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs568879026	chr14:56120509-56120510	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs539423992	chr14:56120514-56120515	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs551492097	chr14:56120549-56120550	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs369511379	chr14:56120576-56120577	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs372856292	chr14:56120586-56120587	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs566614255	chr14:56120593-56120594	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs6573051	chr14:56120600-56120601	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs369222562	chr14:56120607-56120608	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs574653063	chr14:56120650-56120651	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs567769623	chr14:56120738-56120739	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs535705291	chr14:56120740-56120741	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs539036321	chr14:56120811-56120812	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs144465688	chr14:56120819-56120820	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs575341784	chr14:56120861-56120862	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs374802068	chr14:56120877-56120878	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs188464569	chr14:56120909-56120910	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs118116507	chr14:56120910-56120911	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs55650823	chr14:56120944-56120945	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs572894295	chr14:56121005-56121006	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs180971928	chr14:56121014-56121015	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs562271086	chr14:56121048-56121049	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs200497603	chr14:56121063-56121064	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs150443565	chr14:56121064-56121065	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs10699254	chr14:56121066-56121067	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs35949095	chr14:56121067-56121068	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs201962900	chr14:56121069-56121070	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs184442852	chr14:56121103-56121104	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs115911769	chr14:56121129-56121130	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs190581859	chr14:56121142-56121143	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Colorectal cancer	16272173	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Breast cancer	21633010	CNVD
Breast cancer	22032731	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
small cell lung cancer	20016488	CNVD
Ovarian cancer	21720365	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Breast cancer	17603634	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Neuroblastoma	18923191	CNVD
Medulloblastoma	21163964	CNVD
Cancer	20164919	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1162 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56078600-56148600	Weak transcription	Stomach Mucosa	stomach
2	chr14:56087400-56132200	Strong transcription	Dnd41	blood
3	chr14:56087600-56145200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:56088200-56129400	Weak transcription	Spleen	Spleen
5	chr14:56088200-56132200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:56088400-56121600	Weak transcription	Aorta	Aorta
7	chr14:56088400-56121800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:56088400-56153200	Weak transcription	Gastric	stomach
9	chr14:56092800-56135400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:56094400-56132600	Strong transcription	HSMM	muscle
11	chr14:56095000-56142200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:56097600-56145200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:56097600-56155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:56098600-56121600	Weak transcription	Small Intestine	intestine
15	chr14:56099000-56128000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:56100200-56131000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:56101000-56132800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr14:56101800-56121600	Weak transcription	Pancreas	Pancrea
19	chr14:56101800-56123200	Weak transcription	Fetal Intestine Small	intestine
20	chr14:56101800-56128800	Weak transcription	Fetal Stomach	stomach
21	chr14:56101800-56162800	Weak transcription	Brain Germinal Matrix	brain
22	chr14:56102400-56121600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:56102400-56121600	Weak transcription	Esophagus	oesophagus
24	chr14:56102400-56145200	Weak transcription	Lung	lung
25	chr14:56102400-56185400	Weak transcription	Right Ventricle	heart
26	chr14:56103400-56130600	Weak transcription	Thymus	Thymus
27	chr14:56104600-56121600	Weak transcription	Ovary	ovary
28	chr14:56104600-56127600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr14:56104800-56121600	Weak transcription	Left Ventricle	heart
30	chr14:56104800-56128800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr14:56104800-56157400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr14:56105000-56122600	Weak transcription	NHLF	lung
33	chr14:56105000-56129200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr14:56105000-56138200	Weak transcription	Psoas Muscle	Psoas
35	chr14:56106000-56150200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:56107000-56121600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:56108400-56120800	Weak transcription	NHEK	skin
38	chr14:56109200-56132000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr14:56109200-56141800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr14:56109200-56164000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr14:56109600-56131400	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr14:56109800-56128000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr14:56109800-56139600	Weak transcription	Colonic Mucosa	Colon
44	chr14:56109800-56145400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr14:56110800-56125000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:56111800-56121400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr14:56111800-56127200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:56112800-56131200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr14:56113200-56120400	Strong transcription	GM12878-XiMat	blood
50	chr14:56113200-56131400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links