Variant report

Variant	nsv2535
Chromosome Location	chr19:52580906-52625889
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:661)
CpG islands
(count:794)
Chromatin interactive
region (count:32)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:661 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:52603068-52603334	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:52598763-52599031	HepG2	liver:	n/a	n/a
3	ATF1	chr19:52594171-52594249	K562	blood:	n/a	n/a
4	ATF3	chr19:52603087-52603281	HepG2	liver:	n/a	n/a
5	BHLHE40	chr19:52598521-52599141	K562	blood:	n/a	n/a
6	BHLHE40	chr19:52598657-52599179	GM12878	blood:	n/a	n/a
7	BHLHE40	chr19:52623118-52623120	GM12878	blood:	n/a	n/a
8	BRCA1	chr19:52598777-52598972	GM12878	blood:	n/a	n/a
9	CBX3	chr19:52598773-52599297	K562	blood:	n/a	n/a
10	CBX3	chr19:52600264-52600535	K562	blood:	n/a	n/a
11	CBX3	chr19:52618495-52619228	K562	blood:	n/a	n/a
12	CBX3	chr19:52618714-52619203	K562	blood:	n/a	n/a
13	CBX3	chr19:52593906-52594352	K562	blood:	n/a	n/a
14	CBX3	chr19:52600229-52600621	K562	blood:	n/a	n/a
15	CCNT2	chr19:52598956-52599262	K562	blood:	n/a	chr19:52599057-52599066
16	CEBPB	chr19:52603104-52603238	HepG2	liver:	n/a	n/a
17	CEBPB	chr19:52622651-52622887	HepG2	liver:	n/a	chr19:52622720-52622731 chr19:52622719-52622730 chr19:52622719-52622732 chr19:52622719-52622730 chr19:52622719-52622732
18	CEBPB	chr19:52589789-52590049	IMR90	lung:	n/a	n/a
19	CEBPB	chr19:52615649-52615889	A549	lung:	n/a	chr19:52615715-52615726 chr19:52615717-52615726 chr19:52615716-52615727
20	CEBPB	chr19:52622575-52622875	IMR90	lung:	n/a	chr19:52622720-52622731 chr19:52622719-52622730 chr19:52622719-52622732 chr19:52622719-52622730 chr19:52622719-52622732
21	CEBPB	chr19:52594207-52594234	K562	blood:	n/a	n/a
22	CEBPB	chr19:52622657-52622857	K562	blood:	n/a	chr19:52622720-52622731 chr19:52622719-52622730 chr19:52622719-52622732 chr19:52622719-52622730 chr19:52622719-52622732
23	CEBPB	chr19:52587047-52587271	A549	lung:	n/a	chr19:52587164-52587175
24	CEBPB	chr19:52589737-52590079	Hela-S3	cervix:	n/a	n/a
25	CEBPB	chr19:52603046-52603311	HepG2	liver:	n/a	n/a
26	CEBPB	chr19:52615596-52615866	HepG2	liver:	n/a	chr19:52615715-52615726 chr19:52615717-52615726 chr19:52615716-52615727
27	CEBPB	chr19:52603009-52603411	Hela-S3	cervix:	n/a	n/a
28	CEBPB	chr19:52587032-52587304	IMR90	lung:	n/a	chr19:52587164-52587175
29	CEBPB	chr19:52603769-52603796	HepG2	liver:	n/a	n/a
30	CEBPB	chr19:52587087-52587287	HepG2	liver:	n/a	chr19:52587164-52587175
31	CEBPB	chr19:52590492-52590684	A549	lung:	n/a	n/a
32	CEBPB	chr19:52622597-52622840	A549	lung:	n/a	chr19:52622720-52622731 chr19:52622719-52622730 chr19:52622719-52622732 chr19:52622719-52622730 chr19:52622719-52622732
33	CEBPB	chr19:52589804-52590043	HepG2	liver:	n/a	n/a
34	CHD1	chr19:52598628-52598878	GM12878	blood:	n/a	n/a
35	CHD2	chr19:52598645-52599142	HepG2	liver:	n/a	n/a
36	CHD2	chr19:52598819-52599262	Hela-S3	cervix:	n/a	n/a
37	CHD2	chr19:52598859-52599030	GM12878	blood:	n/a	n/a
38	CREB1	chr19:52598816-52599233	A549	lung:	n/a	n/a
39	CTCF	chr19:52599094-52599164	GM12891	blood:	n/a	n/a
40	CTCF	chr19:52598926-52599197	K562	blood:	n/a	chr19:52599051-52599064 chr19:52599151-52599167
41	CTCF	chr19:52599060-52599210	HCPEpiC	choroid plexus:	n/a	chr19:52599151-52599167
42	CTCF	chr19:52598444-52598550	GM12891	blood:	n/a	chr19:52598502-52598518
43	CTCF	chr19:52599140-52599290	AG09309	skin:	n/a	chr19:52599151-52599167 chr19:52599212-52599221
44	CTCF	chr19:52598620-52598770	HepG2	liver:	n/a	n/a
45	CTCF	chr19:52598457-52598486	ProgFib	skin:	n/a	n/a
46	CTCF	chr19:52598460-52598610	HCFaa	heart:	n/a	chr19:52598502-52598518
47	CTCF	chr19:52598380-52598530	GM12871	blood:	n/a	chr19:52598502-52598518
48	CTCF	chr19:52599040-52599190	SK-N-SH_RA	brain:	n/a	chr19:52599051-52599064 chr19:52599151-52599167
49	CTCF	chr19:52599020-52599170	Caco-2	colon:	n/a	chr19:52599051-52599064 chr19:52599151-52599167
50	CTCF	chr19:52599060-52599210	AG04449	skin:	n/a	chr19:52599151-52599167

(count:794 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:52599256-52599306	PrEC	prostate:	n/a
2	chr19:52599256-52599306	PrEC	prostate:	n/a
3	chr19:52599256-52599306	HIPEpiC	eye:	n/a
4	chr19:52598653-52598703	A549	lung:	n/a
5	chr19:52602607-52602657	LNCaP	prostate:	n/a
6	chr19:52618714-52618764	SK-N-MC	brain:	n/a
7	chr19:52598983-52599033	HL-60	blood:	n/a
8	chr19:52599226-52599276	AG09309	skin:	n/a
9	chr19:52599190-52599240	A549	lung:	n/a
10	chr19:52617816-52617866	HL-60	blood:	n/a
11	chr19:52599226-52599276	SKMC	muscle:	n/a
12	chr19:52599232-52599282	AG09309	skin:	n/a
13	chr19:52599329-52599379	U87	brain:	n/a
14	chr19:52599232-52599282	HepG2	liver:	n/a
15	chr19:52599232-52599282	SK-N-MC	brain:	n/a
16	chr19:52599232-52599282	H1-hESC	embryonic stem cell:	embryo
17	chr19:52595995-52596045	BE2_C	brain:	n/a
18	chr19:52599232-52599282	HCPEpiC	choroid plexus:	n/a
19	chr19:52595995-52596045	SAEC	small airway:	n/a
20	chr19:52595995-52596045	GM06990	blood:	n/a
21	chr19:52602607-52602657	PFSK-1	brain:	n/a
22	chr19:52599256-52599306	IMR90	lung:	fetal
23	chr19:52599190-52599240	HEEpiC	esophagus:	n/a
24	chr19:52599232-52599282	HMEC	breast:	n/a
25	chr19:52598999-52599049	PFSK-1	brain:	n/a
26	chr19:52617816-52617866	HEK293	kidney:	embryo
27	chr19:52595995-52596045	HAEpiC	amniotic membrane:	n/a
28	chr19:52599329-52599379	NT2-D1	testis:	n/a
29	chr19:52598653-52598703	MCF10A-Er-Src	breast:	n/a
30	chr19:52618714-52618764	HEEpiC	esophagus:	n/a
31	chr19:52618714-52618764	HPAEpiC	pulmonary alveolar:	n/a
32	chr19:52598999-52599049	HEEpiC	esophagus:	n/a
33	chr19:52598715-52598765	PrEC	prostate:	n/a
34	chr19:52599329-52599379	A549	lung:	n/a
35	chr19:52598715-52598765	U87	brain:	n/a
36	chr19:52599329-52599379	CMK	blood:	n/a
37	chr19:52618714-52618764	SK-N-SH	brain:	n/a
38	chr19:52598653-52598703	HepG2	liver:	n/a
39	chr19:52618714-52618764	GM12891	blood:	n/a
40	chr19:52598983-52599033	HRPEpiC	eye:	n/a
41	chr19:52599256-52599306	AG09309	skin:	n/a
42	chr19:52599190-52599240	BJ	skin:	n/a
43	chr19:52599329-52599379	HepG2	liver:	n/a
44	chr19:52595995-52596045	GM12891	blood:	n/a
45	chr19:52598983-52599033	SK-N-SH_RA	brain:	n/a
46	chr19:52599232-52599282	HPAEpiC	pulmonary alveolar:	n/a
47	chr19:52617816-52617866	GM12892	blood:	n/a
48	chr19:52599232-52599282	HL-60	blood:	n/a
49	chr19:52599329-52599379	HCPEpiC	choroid plexus:	n/a
50	chr19:52598715-52598765	ECC-1	luminal epithelium:	n/a

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:52364218..52366418-chr19:52619578..52622239,2	K562	blood:
2	chr19:52599336..52601507-chr19:52614635..52617112,2	MCF-7	breast:
3	chr19:52587609..52589157-chr19:52597921..52600004,2	MCF-7	breast:
4	chr19:52607030..52609292-chr19:52641684..52643260,2	MCF-7	breast:
5	chr19:52573383..52575411-chr19:52583910..52586423,2	K562	blood:
6	chr19:52595303..52597440-chr19:52603076..52604958,2	K562	blood:
7	chr19:52586512..52588312-chr19:52591776..52593948,2	K562	blood:
8	chr19:52577623..52579187-chr19:52581297..52583798,2	K562	blood:
9	chr19:52589109..52592650-chr19:52594968..52600030,5	K562	blood:
10	chr19:52551129..52553978-chr19:52617464..52619426,2	K562	blood:
11	chr19:52586512..52588312-chr19:52591776..52593948,2	K562	blood:
12	chr19:52551202..52553746-chr19:52596231..52599092,3	K562	blood:
13	chr19:52588715..52590234-chr19:52693022..52695108,2	K562	blood:
14	chr19:52551934..52553861-chr19:52580531..52583502,3	K562	blood:
15	chr19:52597423..52599077-chr19:52692134..52694986,2	K562	blood:
16	chr19:52597551..52599096-chr19:52643130..52644965,2	K562	blood:
17	chr19:52588475..52590807-chr19:52591326..52593496,3	K562	blood:
18	chr19:52613950..52617876-chr19:52619637..52624173,4	K562	blood:
19	chr19:52588475..52590807-chr19:52591326..52593496,3	K562	blood:
20	chr19:52599336..52601507-chr19:52614635..52617112,2	MCF-7	breast:
21	chr19:52575600..52577356-chr19:52580817..52583793,2	K562	blood:
22	chr19:52598726..52600984-chr19:52691577..52693709,2	MCF-7	breast:
23	chr19:52597459..52600188-chr19:52771516..52774031,2	MCF-7	breast:
24	chr19:52553424..52554983-chr19:52593022..52595719,2	K562	blood:
25	chr19:52551072..52553339-chr19:52588473..52591690,3	K562	blood:
26	chr19:52590181..52592950-chr19:52598268..52601252,2	MCF-7	breast:
27	chr19:52594754..52596918-chr19:52597024..52599025,2	MCF-7	breast:
28	chr19:52583726..52585349-chr19:53074729..53076869,2	K562	blood:
29	chr19:52357534..52360179-chr19:52587172..52589645,2	K562	blood:
30	chr19:52530731..52533530-chr19:52587536..52590204,3	K562	blood:
31	chr19:52597539..52600047-chr19:52619565..52622106,2	K562	blood:
32	chr19:52575483..52578270-chr19:52584112..52586407,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF841-2	chr19:52598828-52598991	NONHSAT067511
2	lnc-ZNF616-1	chr19:52613571-52613979	NONHSAT067514

No data

Variant related genes	Relation type
ZNF841	TF binding region
ENSG00000270248	TF binding region
ZNF432	TF binding region
ZNF841	CpG island
ENSG00000270248	CpG island
ZNF432	CpG island
ENSG00000204611	chromatin interactions
ENSG00000197608	chromatin interactions
ENSG00000256087	chromatin interactions
ENSG00000161551	chromatin interactions
ENSG00000142556	chromatin interactions
ENSG00000270248	chromatin interactions
ENSG00000105568	chromatin interactions
ENSG00000196214	chromatin interactions

Extended variants
information (count: 1795 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:1795 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568335674	chr19:52580941-52580942	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs12609219	chr19:52580996-52580997	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs548580718	chr19:52581003-52581004	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs138109087	chr19:52581018-52581019	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs534287371	chr19:52581021-52581022	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs6509621	chr19:52581022-52581023	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
7	rs577370457	chr19:52581038-52581039	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs538024398	chr19:52581047-52581048	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs556456458	chr19:52581061-52581062	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs149535339	chr19:52581070-52581071	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs79859297	chr19:52581123-52581124	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs116834258	chr19:52581157-52581158	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs7359920	chr19:52581169-52581170	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs138835721	chr19:52581200-52581201	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs142786177	chr19:52581215-52581216	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs182211654	chr19:52581248-52581249	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs543625246	chr19:52581272-52581273	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs561990507	chr19:52581337-52581338	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs546732489	chr19:52581360-52581361	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs371050936	chr19:52581392-52581393	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs148527757	chr19:52581397-52581398	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs527640090	chr19:52581404-52581405	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs552660766	chr19:52581435-52581436	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs571468937	chr19:52581458-52581459	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs7253973	chr19:52581464-52581465	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs538065675	chr19:52581466-52581467	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs550907012	chr19:52581477-52581478	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs112120042	chr19:52581488-52581489	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
29	rs538786610	chr19:52581659-52581660	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs186560823	chr19:52581681-52581682	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs11671792	chr19:52581683-52581684	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs535737646	chr19:52581719-52581720	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs368358846	chr19:52581728-52581729	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs192565378	chr19:52581757-52581758	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs374129941	chr19:52581779-52581780	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs566523248	chr19:52581797-52581798	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs557851906	chr19:52581798-52581799	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs200266841	chr19:52581810-52581811	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs576032764	chr19:52581820-52581821	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs367639526	chr19:52581821-52581822	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs561853052	chr19:52581822-52581823	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs529055983	chr19:52581839-52581840	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs183406738	chr19:52581842-52581843	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs553125039	chr19:52581845-52581846	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs559356651	chr19:52581869-52581870	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs371431161	chr19:52581886-52581887	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs577832269	chr19:52581909-52581910	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs527700229	chr19:52581930-52581931	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs57446208	chr19:52581954-52581955	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs538931770	chr19:52582005-52582006	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Adrenocortical carcinoma	18281524	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1531 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52561000-52597400	ZNF genes & repeats	Liver	Liver
2	chr19:52561000-52597600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:52561200-52586200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:52562800-52581200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr19:52562800-52595400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:52562800-52597400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:52563000-52581600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr19:52563200-52586600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr19:52563200-52586600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
10	chr19:52563600-52581800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
11	chr19:52563600-52597400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:52563800-52597200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr19:52564800-52596200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
14	chr19:52565000-52581400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr19:52565200-52581200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr19:52565400-52581200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr19:52565400-52581400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr19:52565400-52581400	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr19:52565400-52597200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:52566600-52581400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
21	chr19:52566800-52581600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
22	chr19:52567600-52581600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
23	chr19:52567600-52581600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
24	chr19:52567600-52581600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
25	chr19:52568800-52581200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
26	chr19:52568800-52581400	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr19:52568800-52588800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
28	chr19:52569200-52581400	ZNF genes & repeats	GM12878-XiMat	blood
29	chr19:52569200-52581800	ZNF genes & repeats	Colonic Mucosa	Colon
30	chr19:52569400-52581800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
31	chr19:52571600-52591600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
32	chr19:52572000-52581200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
33	chr19:52572800-52581400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr19:52574200-52581800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:52574200-52597600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr19:52574600-52594200	Strong transcription	Stomach Smooth Muscle	stomach
37	chr19:52575200-52593000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr19:52575200-52596400	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr19:52575800-52581200	Strong transcription	Fetal Brain Male	brain
40	chr19:52575800-52581400	ZNF genes & repeats	Fetal Intestine Large	intestine
41	chr19:52575800-52581400	ZNF genes & repeats	Small Intestine	intestine
42	chr19:52575800-52581600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr19:52575800-52581800	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr19:52575800-52581800	ZNF genes & repeats	Ovary	ovary
45	chr19:52576400-52581400	ZNF genes & repeats	Aorta	Aorta
46	chr19:52576400-52584400	Strong transcription	Brain Germinal Matrix	brain
47	chr19:52576600-52581400	ZNF genes & repeats	Fetal Muscle Leg	muscle
48	chr19:52576600-52596600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr19:52576800-52592200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr19:52577200-52581400	Strong transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links