Variant report

Variant	nsv350038
Chromosome Location	chr6:56953752-56960124
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:637)
CpG islands
(count:673)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:637 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:56954669-56954998	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:56954518-56954891	K562	blood:	n/a	n/a
3	ATF1	chr6:56954345-56955010	K562	blood:	n/a	n/a
4	ATF2	chr6:56954677-56955022	GM12878	blood:	n/a	n/a
5	ATF2	chr6:56954421-56955059	GM12878	blood:	n/a	n/a
6	ATF3	chr6:56954645-56955035	K562	blood:	n/a	chr6:56954816-56954825
7	BATF	chr6:56955894-56956190	GM12878	blood:	n/a	n/a
8	BATF	chr6:56955327-56955836	GM12878	blood:	n/a	n/a
9	BATF	chr6:56954998-56955253	GM12878	blood:	n/a	n/a
10	BCL11A	chr6:56954930-56955611	GM12878	blood:	n/a	chr6:56955291-56955304
11	BCL3	chr6:56954430-56955027	K562	blood:	n/a	n/a
12	BCLAF1	chr6:56954392-56955175	GM12878	blood:	n/a	n/a
13	BCLAF1	chr6:56954465-56955072	K562	blood:	n/a	n/a
14	BCLAF1	chr6:56954456-56955077	GM12878	blood:	n/a	n/a
15	BCLAF1	chr6:56954356-56954969	K562	blood:	n/a	n/a
16	BHLHE40	chr6:56954343-56955004	K562	blood:	n/a	chr6:56954714-56954730
17	BHLHE40	chr6:56954512-56955002	GM12878	blood:	n/a	chr6:56954714-56954730
18	BRCA1	chr6:56954642-56955026	Hela-S3	cervix:	n/a	n/a
19	BRCA1	chr6:56954496-56954784	H1-hESC	embryonic stem cell:	n/a	n/a
20	CBX3	chr6:56954501-56955990	K562	blood:	n/a	n/a
21	CBX3	chr6:56955311-56955690	K562	blood:	n/a	n/a
22	CBX3	chr6:56954349-56955081	HCT-116	colon:	n/a	n/a
23	CCNT2	chr6:56954385-56955109	K562	blood:	n/a	n/a
24	CEBPB	chr6:56954598-56954971	K562	blood:	n/a	n/a
25	CEBPB	chr6:56954714-56955007	Hela-S3	cervix:	n/a	n/a
26	CEBPB	chr6:56954488-56954950	K562	blood:	n/a	n/a
27	CEBPB	chr6:56955252-56956265	K562	blood:	n/a	chr6:56955823-56955836
28	CEBPD	chr6:56954432-56955913	K562	blood:	n/a	n/a
29	CEBPD	chr6:56954753-56955047	HepG2	liver:	n/a	n/a
30	CEBPD	chr6:56954398-56955089	K562	blood:	n/a	n/a
31	CEBPD	chr6:56954576-56955129	HepG2	liver:	n/a	n/a
32	CHD1	chr6:56954143-56955164	IMR90	lung:	n/a	n/a
33	CHD1	chr6:56954388-56954809	GM12878	blood:	n/a	n/a
34	CHD2	chr6:56954578-56955023	K562	blood:	n/a	n/a
35	CHD2	chr6:56954606-56955077	HepG2	liver:	n/a	n/a
36	CHD2	chr6:56954465-56955085	GM12878	blood:	n/a	n/a
37	CHD2	chr6:56954448-56955031	H1-hESC	embryonic stem cell:	n/a	n/a
38	CHD2	chr6:56954594-56955097	Hela-S3	cervix:	n/a	n/a
39	CREB1	chr6:56954559-56955097	GM12878	blood:	n/a	n/a
40	CREB1	chr6:56954431-56955095	HepG2	liver:	n/a	n/a
41	CREB1	chr6:56954673-56955031	ECC-1	luminal epithelium:	n/a	n/a
42	CREB1	chr6:56954424-56955082	K562	blood:	n/a	n/a
43	CREB1	chr6:56954523-56955098	H1-hESC	embryonic stem cell:	n/a	n/a
44	CREB1	chr6:56954667-56955035	A549	lung:	n/a	n/a
45	CREB1	chr6:56954441-56955086	HepG2	liver:	n/a	n/a
46	CREB1	chr6:56954582-56955018	ECC-1	luminal epithelium:	n/a	n/a
47	CREB1	chr6:56954522-56955074	H1-hESC	embryonic stem cell:	n/a	n/a
48	CREB1	chr6:56954613-56955078	A549	lung:	n/a	n/a
49	CREB1	chr6:56954343-56955104	K562	blood:	n/a	n/a
50	CTCF	chr6:56954800-56954950	GM12865	blood:	n/a	n/a

(count:673 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:56955042-56955092	NHBE	bronchial:	n/a
2	chr6:56954773-56954823	PFSK-1	brain:	n/a
3	chr6:56955042-56955092	NHBE	bronchial:	n/a
4	chr6:56954773-56954823	PFSK-1	brain:	n/a
5	chr6:56954907-56954957	HRCEpiC	kidney:	n/a
6	chr6:56958631-56958681	SAEC	small airway:	n/a
7	chr6:56954917-56954967	IMR90	lung:	fetal
8	chr6:56954779-56954829	MCF-7	breast:	n/a
9	chr6:56954784-56954834	HAEpiC	amniotic membrane:	n/a
10	chr6:56953982-56954032	BJ	skin:	n/a
11	chr6:56953991-56954041	AG04449	skin:	fetal
12	chr6:56956578-56956628	U87	brain:	n/a
13	chr6:56955042-56955092	IMR90	lung:	fetal
14	chr6:56954784-56954834	NT2-D1	testis:	n/a
15	chr6:56954779-56954829	K562	blood:	n/a
16	chr6:56958631-56958681	AG04449	skin:	fetal
17	chr6:56956578-56956628	AG04449	skin:	fetal
18	chr6:56954784-56954834	AG09309	skin:	n/a
19	chr6:56953991-56954041	U87	brain:	n/a
20	chr6:56954677-56954727	NB4	blood:	n/a
21	chr6:56954784-56954834	HMEC	breast:	n/a
22	chr6:56954677-56954727	GM12891	blood:	n/a
23	chr6:56956578-56956628	Caco-2	colon:	n/a
24	chr6:56953991-56954041	SAEC	small airway:	n/a
25	chr6:56954677-56954727	HEEpiC	esophagus:	n/a
26	chr6:56956578-56956628	HEK293	kidney:	embryo
27	chr6:56958631-56958681	SK-N-SH	brain:	n/a
28	chr6:56954907-56954957	ProgFib	skin:	n/a
29	chr6:56953991-56954041	HEK293	kidney:	embryo
30	chr6:56954773-56954823	HPAEpiC	pulmonary alveolar:	n/a
31	chr6:56954773-56954823	Caco-2	colon:	n/a
32	chr6:56953991-56954041	H1-hESC	embryonic stem cell:	embryo
33	chr6:56954779-56954829	U87	brain:	n/a
34	chr6:56954773-56954823	Hela-S3	cervix:	n/a
35	chr6:56955042-56955092	SAEC	small airway:	n/a
36	chr6:56954677-56954727	LNCaP	prostate:	n/a
37	chr6:56954784-56954834	SAEC	small airway:	n/a
38	chr6:56954907-56954957	HEEpiC	esophagus:	n/a
39	chr6:56954784-56954834	Hepatocyte	liver:	n/a
40	chr6:56955042-56955092	BE2_C	brain:	n/a
41	chr6:56954907-56954957	NT2-D1	testis:	n/a
42	chr6:56955042-56955092	PFSK-1	brain:	n/a
43	chr6:56954779-56954829	SKMC	muscle:	n/a
44	chr6:56954677-56954727	HRCEpiC	kidney:	n/a
45	chr6:56958631-56958681	IMR90	lung:	fetal
46	chr6:56954779-56954829	NHBE	bronchial:	n/a
47	chr6:56956578-56956628	HRCEpiC	kidney:	n/a
48	chr6:56956578-56956628	K562	blood:	n/a
49	chr6:56954677-56954727	IMR90	lung:	fetal
50	chr6:56954917-56954967	PrEC	prostate:	n/a

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:56959009..56963624-chr6:57035365..57039055,4	K562	blood:
2	chr6:56956552..56959320-chr6:56963385..56965613,2	MCF-7	breast:
3	chr6:56959960..56961495-chr6:57039042..57041838,2	K562	blood:
4	chr6:56960085..56961933-chr6:57032456..57035012,2	K562	blood:
5	chr6:56954866..56956566-chr6:56964924..56967496,2	MCF-7	breast:
6	chr6:56957996..56959783-chr6:57181332..57183913,2	MCF-7	breast:
7	chr6:56954768..56956361-chr6:56959991..56962097,2	MCF-7	breast:
8	chr6:56911241..56911877-chr6:56954515..56955089,3	Hela-S3	cervix:
9	chr6:56925002..56928122-chr6:56956641..56958794,3	K562	blood:
10	chr6:56948909..56950719-chr6:56952712..56954669,2	K562	blood:
11	chr6:56818533..56822842-chr6:56954657..56959004,6	K562	blood:
12	chr6:56954591..56956568-chr6:57036921..57038610,2	MCF-7	breast:
13	chr6:56913257..56915032-chr6:56957847..56960567,2	K562	blood:
14	chr12:77457691..77459253-chr6:56958727..56961580,2	MCF-7	breast:
15	chr6:56954167..56956467-chr6:57034197..57037095,2	K562	blood:
16	chr6:56954882..56956500-chr6:56957366..56960018,2	MCF-7	breast:
17	chr6:56952370..56954266-chr6:56971549..56974496,2	K562	blood:
18	chr6:56957012..56958879-chr6:57035450..57037220,2	K562	blood:
19	chr6:56956880..56959339-chr6:56996138..56998446,2	MCF-7	breast:
20	chr6:56956820..56959201-chr6:56973500..56975687,2	K562	blood:
21	chr6:56818718..56821144-chr6:56954189..56956169,2	MCF-7	breast:
22	chr6:56958459..56961139-chr6:57008086..57010930,2	K562	blood:
23	chr6:56959009..56961254-chr6:57035519..57038371,2	K562	blood:
24	chr6:56951498..56953476-chr6:56957306..56959983,2	K562	blood:
25	chr6:56959161..56962012-chr6:57000090..57002565,2	K562	blood:
26	chr6:56818586..56820160-chr6:56954804..56956394,2	K562	blood:
27	chr6:56951936..56954342-chr6:57037762..57039413,2	K562	blood:

No data

Variant related genes	Relation type
ZNF451	TF binding region
ZNF451	CpG island
ENSG00000146143	chromatin interactions
ENSG00000112200	chromatin interactions
ENSG00000151917	chromatin interactions
ENSG00000226803	chromatin interactions
ENSG00000168116	chromatin interactions
ENSG00000112208	chromatin interactions
ENSG00000151914	chromatin interactions

Extended variants
information (count: 183 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:183 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201702748	chr6:56953752-56953753	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs199837558	chr6:56953753-56953754	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs560595092	chr6:56953774-56953775	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs76634460	chr6:56953833-56953834	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs78332531	chr6:56953892-56953893	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs567748635	chr6:56953923-56953924	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs71564878	chr6:56953924-56953925	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs373928098	chr6:56953959-56953960	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs376478778	chr6:56953999-56954000	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs187829333	chr6:56954021-56954022	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs146414776	chr6:56954052-56954053	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs191363716	chr6:56954245-56954246	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
13	rs12174664	chr6:56954262-56954263	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
14	rs183181307	chr6:56954289-56954290	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
15	rs572533421	chr6:56954367-56954368	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs187849869	chr6:56954375-56954376	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs561486062	chr6:56954391-56954392	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs7753537	chr6:56954439-56954440	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs569511893	chr6:56954441-56954442	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs373998316	chr6:56954485-56954486	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
21	rs6459178	chr6:56954518-56954519	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
22	rs9382684	chr6:56954550-56954551	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs551625931	chr6:56954572-56954573	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs148616216	chr6:56954669-56954670	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs527723650	chr6:56954712-56954713	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
26	rs549391663	chr6:56954755-56954756	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
27	rs567808956	chr6:56954766-56954767	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
28	rs538294972	chr6:56954787-56954788	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
29	rs556494272	chr6:56954788-56954789	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
30	rs571781101	chr6:56954789-56954790	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
31	rs538834721	chr6:56954790-56954791	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
32	rs569271362	chr6:56954791-56954792	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
33	rs554077905	chr6:56954813-56954814	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
34	rs572395856	chr6:56954814-56954815	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
35	rs115252582	chr6:56954840-56954841	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
36	rs3800024	chr6:56954851-56954852	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs573665055	chr6:56954862-56954863	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
38	rs544261422	chr6:56954863-56954864	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs371066529	chr6:56954868-56954869	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
40	rs562563585	chr6:56954871-56954872	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
41	rs374473661	chr6:56954873-56954874	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
42	rs577798102	chr6:56954883-56954884	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
43	rs545210565	chr6:56954907-56954908	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
44	rs560476115	chr6:56954961-56954962	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
45	rs527583324	chr6:56954987-56954988	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
46	rs549406021	chr6:56954989-56954990	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
47	rs561230261	chr6:56954993-56954994	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
48	rs371203393	chr6:56955004-56955005	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
49	rs550274742	chr6:56955006-56955007	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
50	rs571633816	chr6:56955013-56955014	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Neurocytoma	17123091	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Neuroblastoma	19686582	CNVD
Neuroblastoma	17289879	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	16912164	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21509527	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:867 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56914600-56954200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:56916800-56954400	Weak transcription	Thymus	Thymus
3	chr6:56918400-56954200	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:56925400-56954400	Weak transcription	Primary B cells from cord blood	blood
5	chr6:56925600-56954200	Weak transcription	Hela-S3	cervix
6	chr6:56926600-56954200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:56927000-56954800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:56927200-56954000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:56929200-56954200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:56929400-56954200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:56930000-56954200	Weak transcription	Fetal Intestine Small	intestine
12	chr6:56930200-56954000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:56930400-56954200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:56931600-56954200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:56932600-56954200	Weak transcription	HMEC	breast
16	chr6:56933200-56954200	Weak transcription	HSMM	muscle
17	chr6:56935200-56954200	Weak transcription	Placenta	Placenta
18	chr6:56935200-56954800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:56939000-56954400	Weak transcription	Ovary	ovary
20	chr6:56939600-56954200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:56939600-56954200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:56939600-56954400	Weak transcription	Aorta	Aorta
23	chr6:56943200-56954200	Weak transcription	Right Atrium	heart
24	chr6:56944800-56954200	Weak transcription	Fetal Stomach	stomach
25	chr6:56945000-56954200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:56945800-56954000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:56947400-56954200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:56947800-56954200	Weak transcription	Adipose Nuclei	Adipose
29	chr6:56948000-56954200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:56948000-56954200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:56948000-56954400	Weak transcription	Psoas Muscle	Psoas
32	chr6:56950400-56954200	Weak transcription	NHDF-Ad	bronchial
33	chr6:56950800-56954200	Weak transcription	Brain Germinal Matrix	brain
34	chr6:56951200-56954000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:56952000-56954000	Weak transcription	HUVEC	blood vessel
36	chr6:56952400-56954400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:56952400-56954400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:56952600-56954200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr6:56952600-56954400	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr6:56952800-56953800	Weak transcription	HepG2	liver
41	chr6:56952800-56954200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr6:56952800-56954400	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr6:56953000-56954200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:56953200-56954200	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr6:56953200-56954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:56953400-56953800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:56953400-56953800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:56953600-56954000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:56953600-56954200	Enhancers	K562	blood
50	chr6:56953800-56954000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links