Variant report

Variant	nsv396987
Chromosome Location	chr8:58349929-58350195
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-11	chr8:58348579-58351315	l_3603_chr8:58348578-58353048_testes

Extended variants
information (count: 23 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535424703	chr8:58349942-58349943	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs555400743	chr8:58349954-58349955	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs186849655	chr8:58349971-58349972	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs375475555	chr8:58349973-58349974	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs557892976	chr8:58349986-58349987	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs576927621	chr8:58350005-58350006	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs545858809	chr8:58350016-58350017	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs370006686	chr8:58350023-58350024	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs78213234	chr8:58350040-58350041	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs28686800	chr8:58350042-58350043	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs76148140	chr8:58350043-58350044	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs542205187	chr8:58350044-58350045	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs190159070	chr8:58350045-58350046	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs74680374	chr8:58350047-58350048	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs79562572	chr8:58350048-58350049	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs75544353	chr8:58350052-58350053	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs77115372	chr8:58350055-58350056	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs541270712	chr8:58350056-58350057	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs76353764	chr8:58350098-58350099	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs186825409	chr8:58350146-58350147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs143108776	chr8:58350149-58350150	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs569748191	chr8:58350188-58350189	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs528931229	chr8:58350195-58350196	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Colorectal cancer	21645411	CNVD
Melanoma	22183965	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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