Variant report

Variant	nsv397981
Chromosome Location	chr8:11017912-11018421
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AF131215.4.1-2	chr8:11018301-11019737	ucscGeneNc_uc010lrv_1

Extended variants
information (count: 35 )
Associated
traits (count: 138 )

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574787002	chr8:11017974-11017975	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs542198487	chr8:11018024-11018025	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs540429838	chr8:11018025-11018026	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs183324165	chr8:11018032-11018033	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs34189474	chr8:11018037-11018038	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs368690549	chr8:11018045-11018046	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs533377006	chr8:11018048-11018049	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs543427067	chr8:11018057-11018058	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs372407135	chr8:11018067-11018068	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs188567021	chr8:11018078-11018079	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs376262865	chr8:11018098-11018099	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs192769077	chr8:11018125-11018126	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs375713676	chr8:11018137-11018138	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs375267094	chr8:11018142-11018143	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs559627984	chr8:11018143-11018144	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs184842945	chr8:11018146-11018147	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs146632934	chr8:11018185-11018186	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs369155116	chr8:11018190-11018191	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs149207183	chr8:11018191-11018192	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs62488586	chr8:11018198-11018199	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs570586811	chr8:11018212-11018213	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs534835091	chr8:11018215-11018216	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs372935705	chr8:11018226-11018227	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs374975870	chr8:11018277-11018278	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs9987122	chr8:11018282-11018283	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs536048808	chr8:11018314-11018315	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs557342136	chr8:11018319-11018320	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs9987131	chr8:11018321-11018322	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs575909999	chr8:11018337-11018338	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs536622264	chr8:11018346-11018347	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs140721780	chr8:11018357-11018358	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs577005188	chr8:11018358-11018359	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs60863755	chr8:11018407-11018408	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs7834546	chr8:11018409-11018410	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs78855645	chr8:11018421-11018422	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:138)

Disease	PMID	Source
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Autism	22495311	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	21990379	CNVD
Psoriasis	20403174	CNVD
Psoriasis	20663923	CNVD
Crohn''s disease	16909382	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Crohn''s disease	20877625	CNVD
Inflammatory disorder	20877625	CNVD
Cardiac defect	21933911	CNVD
Psoriasis	18059266	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Psoriasis	20877625	CNVD
Mental retardation	17847001	CNVD
Prostate cancer	17217626	CNVD
Schizophrenia	21399695	CNVD
Colorectal cancer	21128281	CNVD
Colorectal cancer	19455253	CNVD
Psoriasis	18848619	CNVD
Squamous cell cancer	19047905	CNVD
Colorectal cancer	17229543	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Developmental disorder	20461109	CNVD
abnormal development	18461090	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioblastoma multiforme	21138945	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Gastric cancer	21811585	CNVD
Colorectal cancer	16774939	CNVD
Breast cancer	22522925	CNVD
Acute lymphoblastic leukemia	21390130	CNVD

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10966400-11026200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:10997200-11021000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr8:10999400-11021000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:11001600-11021000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr8:11002800-11022000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:11006800-11026200	Weak transcription	HSMM	muscle
7	chr8:11009200-11021000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:11009200-11024800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:11009800-11021400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:11012000-11021400	Weak transcription	Gastric	stomach
11	chr8:11012000-11022400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:11013200-11021000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:11013400-11026400	Weak transcription	Esophagus	oesophagus
14	chr8:11013600-11028800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:11014800-11021400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:11015400-11021600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:11015600-11021200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr8:11015600-11022400	Enhancers	Primary B cells from peripheral blood	blood
19	chr8:11016000-11021800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:11016600-11021400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr8:11016600-11032200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:11017200-11021000	Weak transcription	Pancreas	Pancrea
23	chr8:11017200-11021400	Weak transcription	Spleen	Spleen
24	chr8:11017400-11021200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:11017400-11025400	Weak transcription	HSMMtube	muscle
26	chr8:11017600-11018600	Enhancers	GM12878-XiMat	blood
27	chr8:11017800-11019000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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