Variant report

Variant	nsv415605
Chromosome Location	chr9:16463295-16463599
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35626977	chr9:16463312-16463313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs199621128	chr9:16463317-16463318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs577058945	chr9:16463336-16463337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs112496140	chr9:16463343-16463344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs557123341	chr9:16463355-16463356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200599165	chr9:16463356-16463357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs553637760	chr9:16463357-16463358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs573462110	chr9:16463365-16463366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs575052994	chr9:16463391-16463392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs375303328	chr9:16463398-16463399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs201588431	chr9:16463449-16463450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs10962426	chr9:16463490-16463491	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs559000406	chr9:16463494-16463495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs372054691	chr9:16463505-16463506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs545004070	chr9:16463507-16463508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs113937785	chr9:16463516-16463517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs564139284	chr9:16463536-16463537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs528594398	chr9:16463563-16463564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs541719689	chr9:16463566-16463567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs533678647	chr9:16463590-16463591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182670841	chr9:16463591-16463592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs529790005	chr9:16463592-16463593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs548197461	chr9:16463593-16463594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs569973364	chr9:16463599-16463600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21611746	CNVD
Pancreatic cancer	21811587	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16457800-16493400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:16458000-16470400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16459600-16470800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:16459600-16482400	Weak transcription	A549	lung
5	chr9:16459600-16499800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:16459600-16500000	Weak transcription	NHLF	lung
7	chr9:16460800-16485400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:16462000-16463800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:16462000-16470600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:16462000-16476400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:16462200-16470400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:16462200-16474000	Weak transcription	Fetal Lung	lung
13	chr9:16463200-16468400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:16463200-16470600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:16463200-16478000	Weak transcription	Ovary	ovary
16	chr9:16463200-16483800	Weak transcription	Fetal Stomach	stomach

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