Variant report
Variant | nsv428424 |
---|---|
Chromosome Location | chr3:162145988-163033943 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2557)
- CpG islands (count:549)
- Chromatin interactive region (count:82)
- LncRNA region (count:76)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr3:162274656-162274700 | K562 | blood: | n/a | n/a |
2 | ARID3A | chr3:163005669-163005678 | K562 | blood: | n/a | n/a |
3 | ATF1 | chr3:162547298-162547407 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr3:162155356-162155600 | K562 | blood: | n/a | n/a |
5 | ATF1 | chr3:162387319-162387469 | K562 | blood: | n/a | n/a |
6 | ATF1 | chr3:162196526-162196643 | K562 | blood: | n/a | n/a |
7 | ATF2 | chr3:162458859-162459451 | H1-hESC | embryonic stem cell: | n/a | n/a |
8 | ATF2 | chr3:162458852-162459444 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | ATF3 | chr3:162210124-162210804 | A549 | lung: | n/a | n/a |
10 | BACH1 | chr3:162205043-162205091 | H1-hESC | embryonic stem cell: | n/a | chr3:162205077-162205091 |
11 | BACH1 | chr3:162650431-162650615 | H1-hESC | embryonic stem cell: | n/a | n/a |
12 | BATF | chr3:162426813-162426972 | GM12878 | blood: | n/a | n/a |
13 | BCL3 | chr3:162210121-162210895 | A549 | lung: | n/a | n/a |
14 | BCL3 | chr3:162610898-162611612 | A549 | lung: | n/a | chr3:162611348-162611357 |
15 | BHLHE40 | chr3:162249523-162249528 | GM12878 | blood: | n/a | n/a |
16 | BRCA1 | chr3:162774855-162774871 | HepG2 | liver: | n/a | n/a |
17 | BRCA1 | chr3:162774683-162774995 | Hela-S3 | cervix: | n/a | n/a |
18 | BRCA1 | chr3:162343607-162343624 | Hela-S3 | cervix: | n/a | n/a |
19 | BRCA1 | chr3:162717002-162717061 | Hela-S3 | cervix: | n/a | n/a |
20 | CBX3 | chr3:162437445-162437946 | HCT-116 | colon: | n/a | n/a |
21 | CBX3 | chr3:163024140-163024571 | HCT-116 | colon: | n/a | n/a |
22 | CCNT2 | chr3:162254493-162254693 | K562 | blood: | n/a | n/a |
23 | CEBPB | chr3:162242803-162243263 | IMR90 | lung: | n/a | n/a |
24 | CEBPB | chr3:162929409-162929718 | IMR90 | lung: | n/a | chr3:162929588-162929605 chr3:162929590-162929601 chr3:162929560-162929571 chr3:162929562-162929573 |
25 | CEBPB | chr3:162932325-162932463 | IMR90 | lung: | n/a | n/a |
26 | CEBPB | chr3:162711839-162712097 | IMR90 | lung: | n/a | chr3:162711927-162711938 |
27 | CEBPB | chr3:162493987-162494268 | A549 | lung: | n/a | n/a |
28 | CEBPB | chr3:162446794-162447048 | Hela-S3 | cervix: | n/a | chr3:162446911-162446922 |
29 | CEBPB | chr3:162446791-162447068 | A549 | lung: | n/a | chr3:162446911-162446922 |
30 | CEBPB | chr3:162426766-162427111 | A549 | lung: | n/a | n/a |
31 | CEBPB | chr3:162815287-162815558 | IMR90 | lung: | n/a | chr3:162815435-162815446 |
32 | CEBPB | chr3:162245731-162246074 | Hela-S3 | cervix: | n/a | chr3:162245980-162245991 |
33 | CEBPB | chr3:162318973-162319104 | HepG2 | liver: | n/a | n/a |
34 | CEBPB | chr3:162407165-162407420 | HepG2 | liver: | n/a | n/a |
35 | CEBPB | chr3:162219243-162219812 | A549 | lung: | n/a | chr3:162219429-162219440 |
36 | CEBPB | chr3:162209604-162211122 | A549 | lung: | n/a | chr3:162210491-162210504 |
37 | CEBPB | chr3:162493953-162494306 | IMR90 | lung: | n/a | n/a |
38 | CEBPB | chr3:162446913-162446930 | H1-hESC | embryonic stem cell: | n/a | n/a |
39 | CEBPB | chr3:162929417-162929749 | K562 | blood: | n/a | chr3:162929588-162929605 chr3:162929590-162929601 chr3:162929560-162929571 chr3:162929562-162929573 |
40 | CEBPB | chr3:162897199-162897419 | A549 | lung: | n/a | n/a |
41 | CEBPB | chr3:162611102-162611541 | A549 | lung: | n/a | n/a |
42 | CEBPB | chr3:162682143-162682476 | HepG2 | liver: | n/a | chr3:162682288-162682299 |
43 | CEBPB | chr3:162729522-162729600 | A549 | lung: | n/a | n/a |
44 | CEBPB | chr3:162318673-162319181 | HepG2 | liver: | n/a | chr3:162318771-162318782 chr3:162318770-162318783 chr3:162318770-162318783 chr3:162318770-162318781 chr3:162318772-162318781 |
45 | CEBPB | chr3:162856075-162856324 | MCF-7 | breast: | n/a | n/a |
46 | CEBPB | chr3:162929418-162929759 | HepG2 | liver: | n/a | chr3:162929588-162929605 chr3:162929590-162929601 chr3:162929560-162929571 chr3:162929562-162929573 |
47 | CEBPB | chr3:163004771-163005007 | HepG2 | liver: | n/a | chr3:163004841-163004852 chr3:163004841-163004850 chr3:163004841-163004850 chr3:163004839-163004852 chr3:163004841-163004850 chr3:163004841-163004850 chr3:163004839-163004852 chr3:163004839-163004852 chr3:163004839-163004850 |
48 | CEBPB | chr3:162151375-162151576 | HepG2 | liver: | n/a | chr3:162151476-162151487 |
49 | CEBPB | chr3:162375820-162376163 | HepG2 | liver: | n/a | chr3:162375998-162376009 chr3:162375998-162376011 chr3:162375960-162375971 chr3:162375999-162376010 chr3:162375998-162376011 chr3:162375998-162376009 |
50 | CEBPB | chr3:162773968-162774176 | HepG2 | liver: | n/a | chr3:162774022-162774033 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:162705337-162705387 | HMEC | breast: | n/a |
2 | chr3:162653787-162653837 | U87 | brain: | n/a |
3 | chr3:162317560-162317610 | HRCEpiC | kidney: | n/a |
4 | chr3:162653787-162653837 | LNCaP | prostate: | n/a |
5 | chr3:163021378-163021428 | GM06990 | blood: | n/a |
6 | chr3:162210236-162210286 | HCF | heart: | n/a |
7 | chr3:162420994-162421044 | HNPCEpiC | eye: | n/a |
8 | chr3:162210236-162210286 | HRE | kidney: | n/a |
9 | chr3:162421027-162421077 | NHDF-neo | bronchial: | n/a |
10 | chr3:162705203-162705253 | Hela-S3 | cervix: | n/a |
11 | chr3:162705337-162705387 | IMR90 | lung: | fetal |
12 | chr3:162421027-162421077 | PANC-1 | pancreas: | n/a |
13 | chr3:162421027-162421077 | AG04450 | lung: | fetal |
14 | chr3:162210236-162210286 | PFSK-1 | brain: | n/a |
15 | chr3:162705203-162705253 | HepG2 | liver: | n/a |
16 | chr3:162420994-162421044 | MCF10A-Er-Src | breast: | n/a |
17 | chr3:162317560-162317610 | HepG2 | liver: | n/a |
18 | chr3:162421027-162421077 | NH-A | brain: | n/a |
19 | chr3:162705427-162705477 | HNPCEpiC | eye: | n/a |
20 | chr3:162317560-162317610 | Caco-2 | colon: | n/a |
21 | chr3:162210236-162210286 | GM12891 | blood: | n/a |
22 | chr3:162705337-162705387 | AG10803 | skin: | n/a |
23 | chr3:162705203-162705253 | HCT-116 | colon: | n/a |
24 | chr3:162317560-162317610 | HAEpiC | amniotic membrane: | n/a |
25 | chr3:162705337-162705387 | AoSMC | blood vessel: | n/a |
26 | chr3:162210236-162210286 | ECC-1 | luminal epithelium: | n/a |
27 | chr3:163021378-163021428 | SK-N-MC | brain: | n/a |
28 | chr3:162421027-162421077 | HNPCEpiC | eye: | n/a |
29 | chr3:162210236-162210286 | LNCaP | prostate: | n/a |
30 | chr3:162705337-162705387 | Jurkat | blood: | n/a |
31 | chr3:162705427-162705477 | MCF-7 | breast: | n/a |
32 | chr3:163021378-163021428 | HPAEpiC | pulmonary alveolar: | n/a |
33 | chr3:162705427-162705477 | SK-N-SH | brain: | n/a |
34 | chr3:162421027-162421077 | NB4 | blood: | n/a |
35 | chr3:163021378-163021428 | HIPEpiC | eye: | n/a |
36 | chr3:162421027-162421077 | GM12892 | blood: | n/a |
37 | chr3:162653787-162653837 | SK-N-MC | brain: | n/a |
38 | chr3:162653787-162653837 | GM12892 | blood: | n/a |
39 | chr3:162705203-162705253 | Hepatocyte | liver: | n/a |
40 | chr3:162421027-162421077 | AG04449 | skin: | fetal |
41 | chr3:163021378-163021428 | HepG2 | liver: | n/a |
42 | chr3:162317560-162317610 | PrEC | prostate: | n/a |
43 | chr3:162705203-162705253 | RPTEC | kidney: | n/a |
44 | chr3:162210236-162210286 | GM12878 | blood: | n/a |
45 | chr3:163021378-163021428 | NHBE | bronchial: | n/a |
46 | chr3:162705427-162705477 | AG04450 | lung: | fetal |
47 | chr3:162420994-162421044 | SK-N-SH | brain: | n/a |
48 | chr3:162421027-162421077 | Jurkat | blood: | n/a |
49 | chr3:162317560-162317610 | Jurkat | blood: | n/a |
50 | chr3:162705337-162705387 | Caco-2 | colon: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:162524861..162526931-chr3:162547103..162549053,2 | MCF-7 | breast: | |
2 | chr3:162524861..162526931-chr3:162547103..162549053,2 | MCF-7 | breast: | |
3 | chr3:162118223..162119105-chr3:162517137..162517997,2 | MCF-7 | breast: | |
4 | chr3:162829065..162831690-chr3:162831998..162834078,2 | MCF-7 | breast: | |
5 | chr3:162494680..162495563-chr3:162760633..162761552,3 | MCF-7 | breast: | |
6 | chr3:162468849..162471720-chr3:162897232..162899564,2 | K562 | blood: | |
7 | chr3:162236582..162237488-chr4:38505086..38506008,2 | MCF-7 | breast: | |
8 | chr3:162622047..162623612-chr3:162639605..162642211,2 | K562 | blood: | |
9 | chr3:162695238..162696118-chr5:168564460..168564967,2 | MCF-7 | breast: | |
10 | chr3:162307801..162310469-chr3:162314134..162316904,3 | MCF-7 | breast: | |
11 | chr3:162627188..162629037-chr3:162630724..162633448,2 | MCF-7 | breast: | |
12 | chr3:162554556..162557102-chr3:162558855..162561328,2 | K562 | blood: | |
13 | chr3:162730866..162732605-chr3:162732763..162734314,2 | MCF-7 | breast: | |
14 | chr3:162411048..162413287-chr3:162414403..162417401,2 | MCF-7 | breast: | |
15 | chr3:162781747..162783965-chr3:162788037..162790015,2 | MCF-7 | breast: | |
16 | chr3:162247272..162249136-chr3:162250613..162253202,3 | MCF-7 | breast: | |
17 | chr3:162486396..162487274-chr3:162497260..162497768,2 | MCF-7 | breast: | |
18 | chr3:162268890..162270552-chr3:162314764..162316650,2 | MCF-7 | breast: | |
19 | chr3:163011480..163014323-chr3:163020834..163023758,2 | MCF-7 | breast: | |
20 | chr3:162394370..162397355-chr3:162401132..162403109,2 | MCF-7 | breast: | |
21 | chr10:69265595..69266499-chr3:162973315..162973821,2 | MCF-7 | breast: | |
22 | chr3:162268890..162270552-chr3:162314764..162316650,2 | MCF-7 | breast: | |
23 | chr3:162548004..162549875-chr3:162551679..162554489,2 | MCF-7 | breast: | |
24 | chr3:162755966..162757761-chr3:162760804..162762764,2 | MCF-7 | breast: | |
25 | chr3:162781747..162783965-chr3:162788037..162790015,2 | MCF-7 | breast: | |
26 | chr3:162821263..162822976-chr3:162826872..162828945,2 | MCF-7 | breast: | |
27 | chr3:162215860..162218810-chr3:162234701..162237384,2 | K562 | blood: | |
28 | chr3:162272776..162275444-chr3:162275569..162277317,2 | K562 | blood: | |
29 | chr3:162754967..162757825-chr3:162758379..162760616,2 | MCF-7 | breast: | |
30 | chr3:162471864..162474454-chr3:162482441..162485010,2 | MCF-7 | breast: | |
31 | chr2:174218936..174220527-chr3:162835384..162836884,2 | K562 | blood: | |
32 | chr3:162399486..162401021-chr3:162401571..162403144,2 | MCF-7 | breast: | |
33 | chr3:162468849..162471720-chr3:162897232..162899564,2 | K562 | blood: | |
34 | chr3:162776529..162777484-chr3:163340191..163340771,2 | MCF-7 | breast: | |
35 | chr3:162003324..162004086-chr3:162760294..162761113,2 | MCF-7 | breast: | |
36 | chr3:162924888..162927929-chr3:162929573..162933579,3 | K562 | blood: | |
37 | chr14:60627662..60628534-chr3:162740219..162740719,2 | MCF-7 | breast: | |
38 | chr3:162730866..162732605-chr3:162732763..162734314,2 | MCF-7 | breast: | |
39 | chr3:162367684..162370185-chr3:162370811..162372665,2 | MCF-7 | breast: | |
40 | chr3:162774576..162775267-chr3:162991199..162992106,3 | MCF-7 | breast: | |
41 | chr3:162367684..162370185-chr3:162370811..162372665,2 | MCF-7 | breast: | |
42 | chr3:162965564..162967593-chr3:162971986..162973917,2 | K562 | blood: | |
43 | chr3:162755966..162757761-chr3:162760804..162762764,2 | MCF-7 | breast: | |
44 | chr3:162774415..162775478-chr3:163207241..163208645,5 | MCF-7 | breast: | |
45 | chr3:162554556..162557102-chr3:162558855..162561328,2 | K562 | blood: | |
46 | chr3:162247272..162249136-chr3:162250613..162253202,3 | MCF-7 | breast: | |
47 | chr3:162774576..162775267-chr3:162991199..162992106,3 | MCF-7 | breast: | |
48 | chr15:52605031..52607219-chr3:162453213..162454978,2 | MCF-7 | breast: | |
49 | chr3:162248022..162250123-chr3:162255012..162257585,2 | MCF-7 | breast: | |
50 | chr3:162307801..162310469-chr3:162314134..162316904,3 | MCF-7 | breast: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-OTOL1-2 | chr3:162443543-162443656 | NONHSAT093026 |
2 | lnc-SI-4 | chr3:162937704-162937975 | ENSG00000241369 |
3 | lnc-SI-4 | chr3:162992984-162993107 | ENSG00000241369 |
4 | lnc-OTOL1-2 | chr3:162948497-162949934 | NONHSAT093026 |
5 | lnc-SI-4 | chr3:162919326-162919405 | ENSG00000241369 |
6 | lnc-SI-4 | chr3:162900619-162900698 | ENSG00000241369 |
7 | lnc-OTOL1-2 | chr3:162744184-162744286 | NONHSAT093026 |
8 | lnc-SI-4 | chr3:162900619-162900716 | ENSG00000241369 |
9 | lnc-SI-4 | chr3:162917662-162917739 | ENSG00000241369 |
10 | lnc-SI-4 | chr3:162937889-162937975 | ENSG00000241369 |
11 | lnc-SI-4 | chr3:162925431-162925545 | ENSG00000241369 |
12 | lnc-SI-4 | chr3:162936848-162936965 | ENSG00000241369 |
13 | lnc-SI-4 | chr3:162845711-162845859 | ENSG00000241369 |
14 | lnc-OTOL1-8 | chr3:162441830-162442283 | NONHSAT093025 |
15 | lnc-OTOL1-9 | chr3:162833217-162833974 | NONHSAT093027 |
16 | lnc-OTOL1-10 | chr3:163031456-163031501 | NONHSAT093040 |
17 | lnc-OTOL1-2 | chr3:162937866-162937980 | NONHSAT093026 |
18 | lnc-OTOL1-2 | chr3:162442527-162442700 | NONHSAT093026 |
19 | lnc-SI-4 | chr3:162992984-162993107 | ENSG00000241369 |
20 | lnc-OTOL1-2 | chr3:162946486-162946540 | NONHSAT093026 |
21 | lnc-SI-4 | chr3:162917411-162917542 | ENSG00000241369 |
22 | lnc-SI-4 | chr3:162996298-162996391 | ENSG00000241369 |
23 | lnc-SI-4 | chr3:162917416-162917542 | ENSG00000241369 |
24 | lnc-OTOL1-10 | chr3:163021583-163022065 | NONHSAT093040 |
25 | lnc-OTOL1-8 | chr3:162455438-162455542 | NONHSAT093025 |
26 | lnc-SI-4 | chr3:162996298-162996391 | ENSG00000241369 |
27 | lnc-SI-4 | chr3:162937889-162937975 | ENSG00000241369 |
28 | lnc-SI-4 | chr3:162937889-162937975 | ENSG00000241369 |
29 | lnc-SI-4 | chr3:162919326-162919405 | ENSG00000241369 |
30 | lnc-SI-4 | chr3:162919870-162920037 | ENSG00000241369 |
31 | lnc-OTOL1-2 | chr3:162948497-162949937 | ENSG00000241168.1 |
32 | lnc-SI-4 | chr3:162917662-162917739 | ENSG00000241369 |
33 | lnc-SI-4 | chr3:162919326-162919405 | ENSG00000241369 |
34 | lnc-SI-4 | chr3:162937889-162937975 | ENSG00000241369 |
35 | lnc-SI-4 | chr3:162921206-162921303 | ENSG00000241369 |
36 | lnc-SI-4 | chr3:162937889-162937929 | ENSG00000241369 |
37 | lnc-OTOL1-2 | chr3:162937866-162937980 | ENSG00000241168.1 |
38 | lnc-SI-4 | chr3:162996298-162996391 | ENSG00000241369 |
39 | lnc-SI-4 | chr3:162992984-162993107 | ENSG00000241369 |
40 | lnc-SI-4 | chr3:162919871-162920037 | NONHSAT093037 |
41 | lnc-OTOL1-2 | chr3:162925763-162925882 | ENSG00000241168.1 |
42 | lnc-SI-4 | chr3:162895031-162895889 | ENSG00000241369 |
43 | lnc-SI-4 | chr3:163021026-163021105 | ENSG00000241369 |
44 | lnc-SI-4 | chr3:162917662-162917739 | ENSG00000241369 |
45 | lnc-SI-4 | chr3:162996298-162996391 | ENSG00000241369 |
46 | lnc-SI-4 | chr3:162917366-162917542 | ENSG00000241369 |
47 | lnc-OTOL1-2 | chr3:162744184-162744286 | ENSG00000241168.1 |
48 | lnc-OTOL1-2 | chr3:162946486-162946540 | ENSG00000241168.1 |
49 | lnc-SI-4 | chr3:162895689-162895889 | ENSG00000241369 |
50 | lnc-SI-4 | chr3:163021026-163021103 | ENSG00000241369 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000244571 | TF binding region |
ENSG00000241168 | TF binding region |
ENSG00000243044 | TF binding region |
CT64 | TF binding region |
TOMM22P6 | TF binding region |
ENSG00000238398 | TF binding region |
ENSG00000244571 | CpG island |
ENSG00000241168 | CpG island |
ENSG00000243044 | CpG island |
CT64 | CpG island |
TOMM22P6 | CpG island |
ENSG00000238398 | CpG island |
ENSG00000241369 | chromatin interactions |
ENSG00000244571 | chromatin interactions |
ENSG00000243176 | chromatin interactions |
ENSG00000144354 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs207463981 | chr3:162146031-162146032 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs386667693 | chr3:162146061-162146062 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs6801686 | chr3:162146063-162146064 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
4 | rs540219264 | chr3:162146083-162146084 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs191778079 | chr3:162146092-162146093 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs6777189 | chr3:162146093-162146094 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
7 | rs542747953 | chr3:162146102-162146103 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs374650281 | chr3:162146104-162146105 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs561524722 | chr3:162146115-162146116 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs6765996 | chr3:162146173-162146174 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
11 | rs550376722 | chr3:162146201-162146202 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs113849422 | chr3:162146266-162146267 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs6441462 | chr3:162146282-162146283 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
14 | rs116384743 | chr3:162146283-162146284 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs566501204 | chr3:162146290-162146291 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs146430315 | chr3:162146362-162146363 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs57317156 | chr3:162146363-162146364 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs199574945 | chr3:162146367-162146368 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs200706914 | chr3:162146368-162146369 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs397801165 | chr3:162146370-162146371 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs182361278 | chr3:162146380-162146381 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs187013034 | chr3:162146381-162146382 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs568993702 | chr3:162146401-162146402 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs538403832 | chr3:162146405-162146406 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs558390498 | chr3:162146444-162146445 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs530275647 | chr3:162146500-162146501 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs115625782 | chr3:162146571-162146572 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs35952490 | chr3:162146580-162146581 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
29 | rs553865384 | chr3:162146604-162146605 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs9883137 | chr3:162146664-162146665 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
31 | rs542633651 | chr3:162146712-162146713 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs562608991 | chr3:162146727-162146728 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs531700645 | chr3:162146752-162146753 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs6441463 | chr3:162146786-162146787 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
35 | rs564351023 | chr3:162146816-162146817 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs141200413 | chr3:162146828-162146829 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs533066521 | chr3:162146832-162146833 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs539314829 | chr3:162146841-162146842 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs566320816 | chr3:162146845-162146846 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs528850536 | chr3:162146865-162146866 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs115098284 | chr3:162146902-162146903 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs568928085 | chr3:162146915-162146916 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs537988655 | chr3:162146928-162146929 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs146334767 | chr3:162146942-162146943 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs571847582 | chr3:162146977-162146978 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs200532997 | chr3:162155200-162155201 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
47 | rs571809044 | chr3:162155203-162155204 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
48 | rs201738956 | chr3:162155281-162155282 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
49 | rs113514597 | chr3:162155302-162155303 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
50 | rs150360667 | chr3:162155307-162155308 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Basal cell lymphoma | 17053054 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Lung cancer | 18438408 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Melanoma | 18172304 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Breast cancer | 22032731 | CNVD |
Breast cancer | 16461572 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Cervical Cancer | 21857958 | CNVD |
Melanoma | 21693616 | CNVD |
Lung cancer | 21426551 | CNVD |
Cancer | 21637783 | CNVD |
Cervical cancer | 21063398 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oral cancer | 21386901 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Cancer | 22065749 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Breast cancer | 16608533 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Non-small cell lung cancer | 19010865 | CNVD |
Prostate cancer | 18632612 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Prostate cancer | 16547154 | CNVD |
Breast cancer | 21364760 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Prostate cancer | 16573809 | CNVD |
Breast cancer | 21785460 | CNVD |
Bladder cancer | 21909424 | CNVD |
Sudden cardiac death | 19188705 | CNVD |
Mantle cell lymphoma | 19029149 | CNVD |
Malformation | 19546859 | CNVD |
Schizophrenia | 19546859 | CNVD |
Breast cancer | 17133270 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Attention deficit hyperactivity disorder | 21324949 | CNVD |
Barrett''s adenocarcinoma | 18663352 | CNVD |
epilepsy | 18472482 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Myxofibrosarcoma | 16751306 | CNVD |
Parkinson disease | 21907011 | CNVD |
Lung cancer | 20668451 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Breast cancer | 22522925 | CNVD |
Schizophrenia | 23813976 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Ovarian cancer | 21781307 | CNVD |
Chordoma | 21215367 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:162137000-162147000 | Weak transcription | H9 Cell Line | embryonic stem cell |
2 | chr3:162155200-162157200 | ZNF genes & repeats | Dnd41 | blood |
3 | chr3:162155600-162156000 | Enhancers | Osteobl | bone |
4 | chr3:162157200-162161200 | Weak transcription | Dnd41 | blood |
5 | chr3:162159400-162160200 | Enhancers | Fetal Heart | heart |
6 | chr3:162161200-162161400 | Enhancers | Dnd41 | blood |
7 | chr3:162161400-162169600 | Weak transcription | Dnd41 | blood |
8 | chr3:162167000-162168600 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
9 | chr3:162176200-162176400 | ZNF genes & repeats | Pancreas | Pancrea |
10 | chr3:162177400-162177800 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
11 | chr3:162177600-162178000 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
12 | chr3:162204000-162204800 | Enhancers | Dnd41 | blood |
13 | chr3:162204800-162213000 | Weak transcription | Dnd41 | blood |
14 | chr3:162205400-162206200 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
15 | chr3:162205800-162206200 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
16 | chr3:162206200-162210000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
17 | chr3:162208800-162209200 | Enhancers | A549 | lung |
18 | chr3:162209200-162209600 | Weak transcription | A549 | lung |
19 | chr3:162209600-162209800 | Enhancers | Osteobl | bone |
20 | chr3:162209600-162210000 | Enhancers | Muscle Satellite Cultured Cells | -- |
21 | chr3:162209600-162210200 | Enhancers | A549 | lung |
22 | chr3:162209600-162211400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
23 | chr3:162209800-162210000 | Flanking Active TSS | Osteobl | bone |
24 | chr3:162209800-162210200 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
25 | chr3:162209800-162211000 | Enhancers | Hela-S3 | cervix |
26 | chr3:162209800-162211200 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
27 | chr3:162209800-162211200 | Enhancers | NH-A | brain |
28 | chr3:162209800-162211200 | Enhancers | NHDF-Ad | bronchial |
29 | chr3:162210000-162210200 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
30 | chr3:162210000-162210200 | Enhancers | Osteobl | bone |
31 | chr3:162210000-162210400 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
32 | chr3:162210000-162210600 | Flanking Active TSS | Muscle Satellite Cultured Cells | -- |
33 | chr3:162210000-162211600 | Enhancers | HSMM | muscle |
34 | chr3:162210200-162210400 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
35 | chr3:162210200-162210400 | Flanking Active TSS | A549 | lung |
36 | chr3:162210200-162210600 | Enhancers | HUES64 Cell Line | embryonic stem cell |
37 | chr3:162210200-162210600 | Flanking Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
38 | chr3:162210200-162210600 | Flanking Active TSS | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
39 | chr3:162210200-162210600 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
40 | chr3:162210200-162210600 | Flanking Active TSS | Osteobl | bone |
41 | chr3:162210200-162210800 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
42 | chr3:162210200-162211200 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
43 | chr3:162210200-162211200 | Enhancers | Fetal Heart | heart |
44 | chr3:162210200-162211200 | Enhancers | HSMMtube | muscle |
45 | chr3:162210400-162210800 | Active TSS | A549 | lung |
46 | chr3:162210600-162211000 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
47 | chr3:162210600-162211000 | Enhancers | Muscle Satellite Cultured Cells | -- |
48 | chr3:162210600-162211200 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
49 | chr3:162210600-162211200 | Enhancers | Osteobl | bone |
50 | chr3:162210600-162212000 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |