Variant report

Variant	nsv431520
Chromosome Location	chr16:81172699-81258899
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1737)
CpG islands
(count:856)
Chromatin interactive
region (count:96)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1737 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:81248492-81248727	HepG2	liver:	n/a	n/a
2	ARID3A	chr16:81224425-81224545	HepG2	liver:	n/a	n/a
3	ARID3A	chr16:81238745-81239052	HepG2	liver:	n/a	n/a
4	ARID3A	chr16:81214892-81214996	K562	blood:	n/a	n/a
5	ARID3A	chr16:81214625-81215127	HepG2	liver:	n/a	n/a
6	ARID3A	chr16:81208937-81209198	HepG2	liver:	n/a	n/a
7	ARID3A	chr16:81238678-81239059	K562	blood:	n/a	n/a
8	ARID3A	chr16:81232328-81232582	HepG2	liver:	n/a	n/a
9	ATF1	chr16:81223002-81223299	K562	blood:	n/a	n/a
10	ATF1	chr16:81214812-81215125	K562	blood:	n/a	n/a
11	ATF3	chr16:81208842-81209330	A549	lung:	n/a	n/a
12	ATF3	chr16:81214880-81215235	K562	blood:	n/a	n/a
13	ATF3	chr16:81214756-81215189	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF3	chr16:81214868-81215234	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF3	chr16:81214923-81215132	K562	blood:	n/a	n/a
16	ATF3	chr16:81222914-81223172	K562	blood:	n/a	n/a
17	BACH1	chr16:81174746-81175382	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr16:81175001-81175341	K562	blood:	n/a	n/a
19	BACH1	chr16:81252910-81253010	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chr16:81189210-81189228	K562	blood:	n/a	n/a
21	BCL3	chr16:81206697-81207272	GM12878	blood:	n/a	chr16:81207055-81207064 chr16:81207056-81207065
22	BCL3	chr16:81199974-81200763	GM12878	blood:	n/a	n/a
23	BCL3	chr16:81206605-81207349	GM12878	blood:	n/a	chr16:81207055-81207064 chr16:81207056-81207065
24	BCL3	chr16:81199969-81200597	GM12878	blood:	n/a	n/a
25	BHLHE40	chr16:81238713-81238961	K562	blood:	n/a	n/a
26	BHLHE40	chr16:81200163-81200265	K562	blood:	n/a	n/a
27	BHLHE40	chr16:81224490-81224559	K562	blood:	n/a	n/a
28	BHLHE40	chr16:81256204-81256523	K562	blood:	n/a	n/a
29	BHLHE40	chr16:81222771-81223296	K562	blood:	n/a	n/a
30	BHLHE40	chr16:81204462-81204796	HepG2	liver:	n/a	n/a
31	BHLHE40	chr16:81204595-81204730	K562	blood:	n/a	n/a
32	BHLHE40	chr16:81204484-81204816	HepG2	liver:	n/a	n/a
33	BHLHE40	chr16:81248487-81248577	K562	blood:	n/a	n/a
34	BHLHE40	chr16:81214654-81214874	K562	blood:	n/a	n/a
35	BRCA1	chr16:81200424-81200502	GM12878	blood:	n/a	n/a
36	BRCA1	chr16:81232353-81232533	HepG2	liver:	n/a	n/a
37	CBX3	chr16:81248387-81248717	K562	blood:	n/a	n/a
38	CBX3	chr16:81222933-81223263	K562	blood:	n/a	n/a
39	CBX3	chr16:81214767-81215170	K562	blood:	n/a	n/a
40	CBX3	chr16:81177298-81178299	HCT-116	colon:	n/a	n/a
41	CBX3	chr16:81174969-81175313	K562	blood:	n/a	n/a
42	CBX3	chr16:81177278-81178302	HCT-116	colon:	n/a	n/a
43	CCNT2	chr16:81254050-81254484	K562	blood:	n/a	n/a
44	CEBPB	chr16:81214342-81214519	H1-hESC	embryonic stem cell:	n/a	chr16:81214389-81214400
45	CEBPB	chr16:81214850-81215177	A549	lung:	n/a	chr16:81214955-81214966
46	CEBPB	chr16:81224410-81224698	K562	blood:	n/a	n/a
47	CEBPB	chr16:81214881-81215116	K562	blood:	n/a	chr16:81214955-81214966
48	CEBPB	chr16:81175038-81175238	HepG2	liver:	n/a	n/a
49	CEBPB	chr16:81208363-81208892	IMR90	lung:	n/a	n/a
50	CEBPB	chr16:81177444-81178184	Hela-S3	cervix:	n/a	n/a

(count:856 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:81223254-81223304	CMK	blood:	n/a
2	chr16:81254719-81254769	HAEpiC	amniotic membrane:	n/a
3	chr16:81223254-81223304	CMK	blood:	n/a
4	chr16:81254719-81254769	HAEpiC	amniotic membrane:	n/a
5	chr16:81214503-81214553	SAEC	small airway:	n/a
6	chr16:81254010-81254060	BE2_C	brain:	n/a
7	chr16:81254010-81254060	HUVEC	blood vessel:	n/a
8	chr16:81254010-81254060	GM19239	blood:	n/a
9	chr16:81208471-81208521	SK-N-SH_RA	brain:	n/a
10	chr16:81214503-81214553	HEK293	kidney:	embryo
11	chr16:81190750-81190800	AG09309	skin:	n/a
12	chr16:81254169-81254219	HAEpiC	amniotic membrane:	n/a
13	chr16:81254051-81254101	T-47D	breast:	n/a
14	chr16:81254719-81254769	AG04449	skin:	fetal
15	chr16:81254209-81254259	HRCEpiC	kidney:	n/a
16	chr16:81223254-81223304	GM12878	blood:	n/a
17	chr16:81190547-81190597	NHDF-neo	bronchial:	n/a
18	chr16:81190547-81190597	HNPCEpiC	eye:	n/a
19	chr16:81255310-81255360	NB4	blood:	n/a
20	chr16:81190547-81190597	ProgFib	skin:	n/a
21	chr16:81190750-81190800	U87	brain:	n/a
22	chr16:81255310-81255360	PFSK-1	brain:	n/a
23	chr16:81254051-81254101	HRE	kidney:	n/a
24	chr16:81255310-81255360	HRE	kidney:	n/a
25	chr16:81254051-81254101	MCF10A-Er-Src	breast:	n/a
26	chr16:81254719-81254769	HCT-116	colon:	n/a
27	chr16:81254719-81254769	NHDF-neo	bronchial:	n/a
28	chr16:81254719-81254769	GM12878	blood:	n/a
29	chr16:81190494-81190544	NHBE	bronchial:	n/a
30	chr16:81208471-81208521	HUVEC	blood vessel:	n/a
31	chr16:81254209-81254259	SAEC	small airway:	n/a
32	chr16:81253692-81253742	ovcar-3	ovarian:	n/a
33	chr16:81254010-81254060	IMR90	lung:	fetal
34	chr16:81253692-81253742	HL-60	blood:	n/a
35	chr16:81254209-81254259	NH-A	brain:	n/a
36	chr16:81254719-81254769	AG10803	skin:	n/a
37	chr16:81248670-81248720	ProgFib	skin:	n/a
38	chr16:81248670-81248720	SK-N-SH	brain:	n/a
39	chr16:81254209-81254259	HIPEpiC	eye:	n/a
40	chr16:81254010-81254060	Jurkat	blood:	n/a
41	chr16:81254169-81254219	MCF-7	breast:	n/a
42	chr16:81254719-81254769	GM12891	blood:	n/a
43	chr16:81254209-81254259	SKMC	muscle:	n/a
44	chr16:81208471-81208521	ProgFib	skin:	n/a
45	chr16:81190547-81190597	BE2_C	brain:	n/a
46	chr16:81190547-81190597	GM12878	blood:	n/a
47	chr16:81190494-81190544	HCPEpiC	choroid plexus:	n/a
48	chr16:81248670-81248720	PFSK-1	brain:	n/a
49	chr16:81223254-81223304	AG10803	skin:	n/a
50	chr16:81254010-81254060	HCM	heart:	n/a

(count:96 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr16:81068964..81069731-chr16:81231614..81232947,4	MCF-7	breast:
2	chr16:81128511..81130849-chr16:81169835..81172966,4	MCF-7	breast:
3	chr16:81238415..81238961-chr16:81294445..81295011,2	MCF-7	breast:
4	chr16:81198299..81202388-chr16:81206238..81210015,4	K562	blood:
5	chr16:81230952..81233745-chr16:81235442..81237465,2	MCF-7	breast:
6	chr16:81207814..81210316-chr16:81213416..81216125,2	MCF-7	breast:
7	chr16:81232049..81234951-chr16:81236497..81238711,3	MCF-7	breast:
8	chr16:81177178..81179005-chr16:81180841..81182912,2	MCF-7	breast:
9	chr16:81241192..81243910-chr16:81245039..81247038,2	K562	blood:
10	chr16:81168888..81171592-chr16:81175504..81177098,2	MCF-7	breast:
11	chr16:81078751..81080848-chr16:81181095..81182686,2	K562	blood:
12	chr16:81068588..81070297-chr16:81206270..81208917,2	MCF-7	breast:
13	chr16:81167266..81170181-chr16:81212814..81215037,2	MCF-7	breast:
14	chr16:81176050..81179014-chr16:81206703..81209353,3	MCF-7	breast:
15	chr16:81241227..81242898-chr16:81245721..81248177,2	K562	blood:
16	chr16:81068953..81069797-chr16:81176232..81177093,2	K562	blood:
17	chr16:81172576..81173403-chr16:81248138..81248840,3	MCF-7	breast:
18	chr16:81174893..81175517-chr16:81231737..81232731,3	MCF-7	breast:
19	chr16:81069222..81069838-chr16:81238638..81239329,2	MCF-7	breast:
20	chr16:81068894..81069816-chr16:81231960..81232923,14	MCF-7	breast:
21	chr16:81241227..81242898-chr16:81245721..81248177,2	K562	blood:
22	chr16:81181423..81183511-chr16:81191451..81193447,2	MCF-7	breast:
23	chr16:81237375..81239298-chr16:81246693..81248653,2	K562	blood:
24	chr16:81238393..81239236-chr16:81383637..81384525,3	MCF-7	breast:
25	chr16:81221033..81223620-chr16:81234908..81237258,2	K562	blood:
26	chr16:81218978..81220795-chr16:81224166..81226450,2	MCF-7	breast:
27	chr16:81191490..81193382-chr16:81194384..81196208,2	MCF-7	breast:
28	chr16:81194645..81197115-chr16:81199955..81201800,2	MCF-7	breast:
29	chr16:81174893..81175517-chr16:81231737..81232731,3	MCF-7	breast:
30	chr16:81189500..81193417-chr16:81196908..81199749,3	K562	blood:
31	chr16:81110679..81112204-chr16:81228037..81229586,2	MCF-7	breast:
32	chr16:81208169..81210421-chr16:81211002..81212968,2	MCF-7	breast:
33	chr16:81163789..81165490-chr16:81205338..81207838,2	MCF-7	breast:
34	chr16:81247005..81248627-chr16:81352449..81354700,2	MCF-7	breast:
35	chr16:81191490..81193382-chr16:81194384..81196208,2	MCF-7	breast:
36	chr16:81206690..81208975-chr16:81216365..81218786,2	K562	blood:
37	chr16:81187277..81187855-chr16:81231986..81232826,2	MCF-7	breast:
38	chr16:81206765..81209231-chr16:81209316..81211675,3	K562	blood:
39	chr16:81181423..81183511-chr16:81191451..81193447,2	MCF-7	breast:
40	chr16:81194645..81197115-chr16:81199955..81201800,2	MCF-7	breast:
41	chr16:81242972..81244924-chr16:81246844..81249498,3	MCF-7	breast:
42	chr16:81241192..81243910-chr16:81245039..81247038,2	K562	blood:
43	chr16:81238218..81239252-chr16:81247860..81248811,3	MCF-7	breast:
44	chr16:81177178..81179005-chr16:81180841..81182912,2	MCF-7	breast:
45	chr16:81238408..81239122-chr16:81294572..81295294,2	K562	blood:
46	chr16:81247068..81250020-chr16:81347732..81349543,2	MCF-7	breast:
47	chr16:81248661..81251389-chr16:81251410..81253409,3	K562	blood:
48	chr16:81238218..81239252-chr16:81247860..81248811,3	MCF-7	breast:
49	chr16:81068969..81069788-chr16:81189009..81189664,3	MCF-7	breast:
50	chr16:80957573..80958407-chr16:81248225..81248964,2	MCF-7	breast:

No data

Variant related genes	Relation type
PKD1L2	TF binding region
PKD1L2	CpG island
ENSG00000245059	chromatin interactions
ENSG00000261218	chromatin interactions
ENSG00000166454	chromatin interactions
ENSG00000260228	chromatin interactions
ENSG00000260213	chromatin interactions
ENSG00000140905	chromatin interactions
ENSG00000166473	chromatin interactions
ENSG00000261609	chromatin interactions
ENSG00000166455	chromatin interactions

Extended variants
information (count: 6253 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:6253 , 50 per page) page: 1 2 3 4 5 6 7 ... 126

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs140859558	chr16:81172704-81172705	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs74797577	chr16:81172708-81172709	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs551587585	chr16:81172731-81172732	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs116455334	chr16:81172787-81172788	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs534171114	chr16:81172793-81172794	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs201266136	chr16:81172810-81172811	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs113446040	chr16:81172811-81172812	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs398119549	chr16:81172824-81172825	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs149771459	chr16:81172836-81172837	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs552550854	chr16:81172837-81172838	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs145724056	chr16:81172853-81172854	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs187793581	chr16:81172893-81172894	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs559191948	chr16:81172907-81172908	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs58734600	chr16:81172908-81172909	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs531182538	chr16:81172986-81172987	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs372981822	chr16:81172987-81172988	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs190639609	chr16:81172988-81172989	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs117536809	chr16:81173015-81173016	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs572165737	chr16:81173028-81173029	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs4889243	chr16:81173030-81173031	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs77104177	chr16:81173051-81173052	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs531498681	chr16:81173053-81173054	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs62053173	chr16:81173056-81173057	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs373042196	chr16:81173074-81173075	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs377208045	chr16:81173080-81173081	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs533182266	chr16:81173085-81173086	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs370380134	chr16:81173088-81173089	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs372619524	chr16:81173100-81173101	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs536758638	chr16:81173107-81173108	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs566652508	chr16:81173117-81173118	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs527764949	chr16:81173119-81173120	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs375668968	chr16:81173130-81173131	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs375553005	chr16:81173131-81173132	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs12918619	chr16:81173136-81173137	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs374219498	chr16:81173145-81173146	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs200683285	chr16:81173146-81173147	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs372017068	chr16:81173161-81173162	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs560642715	chr16:81173165-81173166	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs376694822	chr16:81173168-81173169	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs201600507	chr16:81173170-81173171	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs556590530	chr16:81173178-81173179	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs4889244	chr16:81173193-81173194	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs367654508	chr16:81173194-81173195	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs376774181	chr16:81173200-81173201	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs149107944	chr16:81173206-81173207	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs184124456	chr16:81173209-81173210	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs542757662	chr16:81173227-81173228	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs554676024	chr16:81173228-81173229	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs563138230	chr16:81173232-81173233	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs141992322	chr16:81173233-81173234	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Autism	21865298	CNVD
Myelofibrosis	22110671	CNVD
Non-small cell lung cancer	21829676	CNVD
Neuroblastoma	18923524	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Obesity	20622171	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Bipolar disorder	19114987	CNVD
Breast cancer	21990379	CNVD

Chromatin state (count:788 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81130000-81187600	Weak transcription	Right Atrium	heart
2	chr16:81151400-81173000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:81154000-81198800	Weak transcription	Right Ventricle	heart
4	chr16:81155400-81174600	Weak transcription	Left Ventricle	heart
5	chr16:81165800-81174800	Weak transcription	Spleen	Spleen
6	chr16:81167200-81181000	Enhancers	Placenta	Placenta
7	chr16:81168800-81174000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr16:81169600-81173400	Enhancers	Adipose Nuclei	Adipose
9	chr16:81170000-81173000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr16:81170000-81174600	Weak transcription	Esophagus	oesophagus
11	chr16:81170800-81174800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr16:81171000-81173000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr16:81171000-81173200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr16:81171000-81176000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr16:81171200-81172800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr16:81171200-81173000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr16:81171200-81173000	Weak transcription	HepG2	liver
18	chr16:81171200-81174600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr16:81171200-81174600	Weak transcription	HMEC	breast
20	chr16:81171200-81193400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr16:81171200-81206400	Weak transcription	Ovary	ovary
22	chr16:81171400-81172800	Weak transcription	A549	lung
23	chr16:81171400-81174600	Weak transcription	Brain Substantia Nigra	brain
24	chr16:81171400-81174800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr16:81171400-81185400	Weak transcription	Brain Anterior Caudate	brain
26	chr16:81171600-81174800	Weak transcription	Brain Hippocampus Middle	brain
27	chr16:81171600-81174800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr16:81171600-81185400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr16:81171600-81192600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr16:81171800-81173000	Weak transcription	Fetal Brain Male	brain
31	chr16:81172600-81172800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr16:81172800-81173400	Enhancers	A549	lung
33	chr16:81172800-81173600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr16:81173000-81173400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr16:81173000-81173400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr16:81173000-81173400	Enhancers	Fetal Brain Male	brain
37	chr16:81173000-81173600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr16:81173000-81173600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr16:81173000-81174400	Enhancers	HepG2	liver
40	chr16:81173200-81173400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr16:81173200-81173600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr16:81173400-81173600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr16:81173400-81174600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr16:81173400-81174600	Weak transcription	A549	lung
45	chr16:81173400-81179800	Weak transcription	Adipose Nuclei	Adipose
46	chr16:81173600-81174600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr16:81173600-81174600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr16:81173600-81174600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr16:81173600-81176600	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr16:81173600-81177400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links