Variant report

Variant	nsv435837
Chromosome Location	chr6:133341664-133349813
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133298843..133300922-chr6:133348879..133351431,2	MCF-7	breast:
2	chr6:133136010..133137577-chr6:133349249..133350798,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206754	chromatin interactions

Extended variants
information (count: 31 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541721559	chr6:133349254-133349255	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs562033960	chr6:133349271-133349272	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs527457678	chr6:133349296-133349297	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs144601837	chr6:133349309-133349310	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs570349004	chr6:133349310-133349311	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs533242897	chr6:133349375-133349376	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs192144365	chr6:133349388-133349389	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs183959968	chr6:133349431-133349432	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs569904322	chr6:133349439-133349440	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs71742374	chr6:133349530-133349531	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs577535151	chr6:133349537-133349538	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs370513842	chr6:133349540-133349541	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs370800172	chr6:133349541-133349542	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs145534038	chr6:133349557-133349558	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs71989273	chr6:133349559-133349560	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs61078244	chr6:133349568-133349569	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs11303699	chr6:133349569-133349570	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs28495111	chr6:133349576-133349577	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs63114762	chr6:133349577-133349578	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs200572595	chr6:133349583-133349584	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs189423386	chr6:133349611-133349612	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs192617720	chr6:133349612-133349613	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs535366026	chr6:133349649-133349650	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs558366039	chr6:133349660-133349661	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs578234444	chr6:133349667-133349668	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs368911266	chr6:133349684-133349685	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs539534506	chr6:133349688-133349689	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs556237043	chr6:133349722-133349723	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs79896715	chr6:133349755-133349756	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs148839741	chr6:133349762-133349763	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs3012464	chr6:133349769-133349770	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Gastric cancer	17908304	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21785460	CNVD
Kartagener syndrome	16639409	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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