Variant report

Variant	nsv437623
Chromosome Location	chr8:58349767-58376503
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-11	chr8:58348579-58351315	l_3603_chr8:58348578-58353048_testes
2	lnc-FAM110B-4	chr8:58375465-58375636	NONHSAT126755
3	lnc-FAM110B-11	chr8:58352607-58353048	l_3603_chr8:58348578-58353048_testes
4	lnc-FAM110B-4	chr8:58375466-58375636	XLOC_006808

Extended variants
information (count: 1110 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:1110 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7845730	chr8:58349767-58349768	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs181644442	chr8:58349790-58349791	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs562385231	chr8:58349832-58349833	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs527927898	chr8:58349854-58349855	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs547963144	chr8:58349860-58349861	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs149897951	chr8:58349874-58349875	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs549739234	chr8:58349877-58349878	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs570465539	chr8:58349878-58349879	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs539495367	chr8:58349906-58349907	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs7827772	chr8:58349912-58349913	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs76626203	chr8:58349915-58349916	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs568062318	chr8:58349916-58349917	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs569632762	chr8:58349925-58349926	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs535424703	chr8:58349942-58349943	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs555400743	chr8:58349954-58349955	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs186849655	chr8:58349971-58349972	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs375475555	chr8:58349973-58349974	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs557892976	chr8:58349986-58349987	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs576927621	chr8:58350005-58350006	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs545858809	chr8:58350016-58350017	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs370006686	chr8:58350023-58350024	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs78213234	chr8:58350040-58350041	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs28686800	chr8:58350042-58350043	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs76148140	chr8:58350043-58350044	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs542205187	chr8:58350044-58350045	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs190159070	chr8:58350045-58350046	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs74680374	chr8:58350047-58350048	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs79562572	chr8:58350048-58350049	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs75544353	chr8:58350052-58350053	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs77115372	chr8:58350055-58350056	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs541270712	chr8:58350056-58350057	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs76353764	chr8:58350098-58350099	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs186825409	chr8:58350146-58350147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs143108776	chr8:58350149-58350150	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs569748191	chr8:58350188-58350189	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs528931229	chr8:58350195-58350196	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs34863992	chr8:58350197-58350198	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs79625145	chr8:58350219-58350220	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs398007939	chr8:58350221-58350222	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs570044145	chr8:58350224-58350225	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs17820016	chr8:58350239-58350240	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs565846482	chr8:58350247-58350248	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs534872288	chr8:58350263-58350264	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs189685133	chr8:58350274-58350275	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs555749762	chr8:58350375-58350376	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs184195205	chr8:58350380-58350381	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs188697769	chr8:58350381-58350382	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs536827963	chr8:58350382-58350383	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs73684420	chr8:58350387-58350388	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs564590928	chr8:58350445-58350446	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Colorectal cancer	21645411	CNVD
Melanoma	22183965	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58350400-58352400	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr8:58351000-58352200	Enhancers	Liver	Liver
3	chr8:58351400-58351600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:58351800-58353000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:58352400-58352800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:58352800-58353600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:58353000-58364400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr8:58353200-58354200	Enhancers	Fetal Lung	lung
9	chr8:58353400-58354000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:58353400-58354600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:58353400-58354800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr8:58353600-58354000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr8:58354000-58354200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr8:58354200-58354800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr8:58354800-58355400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:58354800-58356400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr8:58354800-58359800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr8:58355200-58355400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr8:58356400-58357000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr8:58357000-58357600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr8:58357600-58358400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr8:58358400-58360400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr8:58359200-58359600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr8:58359800-58362200	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr8:58360000-58361000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr8:58360000-58361200	Enhancers	GM12878-XiMat	blood
27	chr8:58360400-58361000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr8:58360600-58361000	Enhancers	Primary B cells from cord blood	blood
29	chr8:58360600-58361000	Enhancers	Spleen	Spleen
30	chr8:58361000-58361400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr8:58361000-58362400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr8:58361200-58361600	Weak transcription	GM12878-XiMat	blood
33	chr8:58361400-58361800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr8:58361600-58362000	Enhancers	GM12878-XiMat	blood
35	chr8:58361600-58362200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:58361800-58362000	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr8:58362000-58362800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr8:58362200-58368000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:58362600-58362800	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr8:58362600-58363200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:58362800-58364400	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr8:58363000-58364000	Enhancers	Fetal Lung	lung
43	chr8:58363200-58370000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr8:58364000-58365000	Weak transcription	Fetal Lung	lung
45	chr8:58365200-58365400	Enhancers	Fetal Lung	lung
46	chr8:58366800-58370000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:58367800-58370200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:58368000-58368600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr8:58368000-58368600	Enhancers	HSMM	muscle
50	chr8:58368000-58369000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links