Variant report

Variant	nsv438118
Chromosome Location	chr9:141003946-141011581
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:141007252..141009770-chr9:141014340..141016354,2	MCF-7	breast:
2	chr9:141011439..141013713-chr9:141015634..141018380,2	K562	blood:
3	chr9:140948638..140949637-chr9:141008065..141008656,3	MCF-7	breast:

Extended variants
information (count: 434 )
Associated
traits (count: 19 )

Variant overlapped rSNPs/rCNVs (count:434 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7357733	chr9:141003946-141003947	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs375089274	chr9:141003998-141003999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs548537994	chr9:141004009-141004010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs146822795	chr9:141004023-141004024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs547850887	chr9:141004028-141004029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs568076920	chr9:141004049-141004050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs182650815	chr9:141004071-141004072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs369103677	chr9:141004125-141004126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs553029476	chr9:141004133-141004134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs545256766	chr9:141004161-141004162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs571123794	chr9:141004199-141004200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184888657	chr9:141004200-141004201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs540178714	chr9:141004201-141004202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs72770903	chr9:141004227-141004228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs570094255	chr9:141004237-141004238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs535873958	chr9:141004295-141004296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs555798139	chr9:141004327-141004328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538177737	chr9:141004363-141004364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs531286677	chr9:141004365-141004366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs140577053	chr9:141004438-141004439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs145641826	chr9:141004460-141004461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs572385846	chr9:141004461-141004462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs373799736	chr9:141004493-141004494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs73575896	chr9:141004538-141004539	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs75719097	chr9:141004550-141004551	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
26	rs34989754	chr9:141004554-141004555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs530187645	chr9:141004568-141004569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs148792012	chr9:141004570-141004571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs371135764	chr9:141004571-141004572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs370563546	chr9:141004572-141004573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs199915399	chr9:141004584-141004585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs13285187	chr9:141004669-141004670	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs531171840	chr9:141004729-141004730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs541468668	chr9:141004810-141004811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs561773479	chr9:141004842-141004843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs371042888	chr9:141004844-141004845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs527438895	chr9:141004874-141004875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs11137372	chr9:141004945-141004946	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs377476409	chr9:141004956-141004957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs533647981	chr9:141005050-141005051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs564145727	chr9:141005052-141005053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs60823546	chr9:141005053-141005054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs115029941	chr9:141005076-141005077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs376223304	chr9:141005086-141005087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570379738	chr9:141005141-141005142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs183426010	chr9:141005225-141005226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs187682037	chr9:141005279-141005280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs140417926	chr9:141005280-141005281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs77388653	chr9:141005293-141005294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs74312742	chr9:141005309-141005310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:19)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140988200-141044600	Weak transcription	Right Atrium	heart
2	chr9:140994200-141013000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:140994600-141008400	Weak transcription	Brain Anterior Caudate	brain
4	chr9:140998400-141009800	Weak transcription	Brain Germinal Matrix	brain
5	chr9:141000400-141016600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:141000600-141011000	Weak transcription	Brain Angular Gyrus	brain
7	chr9:141000800-141009200	Weak transcription	Fetal Brain Female	brain
8	chr9:141000800-141009400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:141001000-141006600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:141006600-141006800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:141006800-141009600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:141007400-141007800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
13	chr9:141008400-141008800	Active TSS	Brain Anterior Caudate	brain
14	chr9:141008400-141009000	Active TSS	A549	lung
15	chr9:141008600-141008800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr9:141008600-141009000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
17	chr9:141008800-141009400	Weak transcription	Brain Anterior Caudate	brain
18	chr9:141008800-141015600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:141009000-141009200	Bivalent Enhancer	A549	lung
20	chr9:141009200-141017600	Strong transcription	Fetal Brain Female	brain
21	chr9:141009400-141009800	Strong transcription	Brain Anterior Caudate	brain
22	chr9:141009400-141010600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:141009600-141012400	Strong transcription	Brain Cingulate Gyrus	brain
24	chr9:141009800-141011200	Strong transcription	Brain Germinal Matrix	brain
25	chr9:141009800-141012000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:141009800-141016200	Weak transcription	Brain Anterior Caudate	brain
27	chr9:141010600-141013400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:141011000-141012600	Strong transcription	Brain Angular Gyrus	brain
29	chr9:141011200-141012000	Weak transcription	Brain Germinal Matrix	brain

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