Variant report

Variant	nsv442063
Chromosome Location	chr7:112514120-112518061
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112429147..112431739-chr7:112516354..112518877,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146802	chromatin interactions

Extended variants
information (count: 150 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:150 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10277476	chr7:112514122-112514123	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs570190524	chr7:112514143-112514144	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs537537005	chr7:112514201-112514202	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs148830855	chr7:112514234-112514235	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs200944362	chr7:112514250-112514251	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs192143301	chr7:112514358-112514359	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs534663946	chr7:112514361-112514362	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs10280825	chr7:112514381-112514382	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs571600627	chr7:112514387-112514388	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs538895887	chr7:112514432-112514433	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs557113468	chr7:112514451-112514452	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs566044230	chr7:112514504-112514505	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs535000069	chr7:112514508-112514509	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs575767910	chr7:112514543-112514544	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs184352454	chr7:112514545-112514546	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs555119313	chr7:112514546-112514547	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs143808831	chr7:112514550-112514551	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs540659152	chr7:112514612-112514613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs551512887	chr7:112514641-112514642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs151106513	chr7:112514655-112514656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs545257252	chr7:112514698-112514699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs571711705	chr7:112514759-112514760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs202180071	chr7:112514776-112514777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs386716924	chr7:112514779-112514780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200269945	chr7:112514780-112514781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs563489883	chr7:112514783-112514784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs530592329	chr7:112514785-112514786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs549460302	chr7:112514817-112514818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567613771	chr7:112514835-112514836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs141108282	chr7:112514901-112514902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs146664810	chr7:112514919-112514920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs139253570	chr7:112515010-112515011	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs538933682	chr7:112515016-112515017	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs189498954	chr7:112515021-112515022	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs75503994	chr7:112515045-112515046	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs115836840	chr7:112515089-112515090	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs555476941	chr7:112515097-112515098	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs75270348	chr7:112515103-112515104	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs141637352	chr7:112515107-112515108	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs552987384	chr7:112515111-112515112	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs577676800	chr7:112515144-112515145	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs545345649	chr7:112515148-112515149	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs544063561	chr7:112515187-112515188	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs551792194	chr7:112515196-112515197	Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs530742104	chr7:112515316-112515317	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs147074253	chr7:112515320-112515321	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs561482590	chr7:112515348-112515349	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs138133048	chr7:112515356-112515357	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs546627170	chr7:112515403-112515404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs192400066	chr7:112515449-112515450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:132 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112468600-112550000	Weak transcription	Aorta	Aorta
2	chr7:112469800-112529000	Weak transcription	Brain Anterior Caudate	brain
3	chr7:112470800-112533200	Weak transcription	HSMM	muscle
4	chr7:112471800-112545200	Weak transcription	Ovary	ovary
5	chr7:112472000-112524600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:112472200-112517800	Weak transcription	Osteobl	bone
7	chr7:112472600-112533200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:112490800-112533000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:112494200-112532400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:112495600-112515000	Weak transcription	Pancreas	Pancrea
11	chr7:112496200-112533400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr7:112498000-112515000	Weak transcription	Gastric	stomach
13	chr7:112499400-112517600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:112499600-112518000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:112500600-112521200	Weak transcription	Thymus	Thymus
16	chr7:112501400-112518000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:112505400-112516000	Weak transcription	Primary T cells from cord blood	blood
18	chr7:112506800-112517800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:112506800-112533000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:112507200-112517800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:112507400-112556800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:112507800-112529800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:112509000-112516600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:112509200-112521000	Weak transcription	Right Atrium	heart
25	chr7:112509400-112516000	Weak transcription	Left Ventricle	heart
26	chr7:112509400-112517000	Weak transcription	Placenta	Placenta
27	chr7:112509400-112517800	Weak transcription	Spleen	Spleen
28	chr7:112509400-112521000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:112509400-112521000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:112509400-112521000	Weak transcription	Esophagus	oesophagus
31	chr7:112509400-112521000	Weak transcription	Fetal Stomach	stomach
32	chr7:112509400-112521600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:112509400-112523400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:112509400-112532400	Weak transcription	Dnd41	blood
35	chr7:112509800-112514400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr7:112510200-112521600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:112510400-112514400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:112510600-112514400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:112510600-112525600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:112511400-112524600	Weak transcription	Brain Germinal Matrix	brain
41	chr7:112512200-112517800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:112512400-112518600	Weak transcription	Fetal Lung	lung
43	chr7:112512800-112533400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:112513000-112518800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr7:112513000-112522000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:112513200-112514200	Enhancers	Primary B cells from cord blood	blood
47	chr7:112513400-112514600	Enhancers	Primary B cells from peripheral blood	blood
48	chr7:112513600-112516000	Weak transcription	Fetal Intestine Small	intestine
49	chr7:112513800-112526200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr7:112513800-112533200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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