Variant report

Variant	nsv457140
Chromosome Location	chr15:52901433-52968746
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:52907586-52907676	HepG2	liver:	n/a	n/a
2	ATF1	chr15:52944912-52944922	K562	blood:	n/a	n/a
3	ATF1	chr15:52945789-52945933	K562	blood:	n/a	n/a
4	ATF1	chr15:52945277-52945552	K562	blood:	n/a	n/a
5	ATF1	chr15:52944153-52944462	K562	blood:	n/a	n/a
6	BACH1	chr15:52916750-52916759	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr15:52928510-52928584	K562	blood:	n/a	n/a
8	BATF	chr15:52959819-52960253	GM12878	blood:	n/a	n/a
9	BATF	chr15:52951269-52951558	GM12878	blood:	n/a	n/a
10	BATF	chr15:52951233-52951524	GM12878	blood:	n/a	n/a
11	BATF	chr15:52959843-52960224	GM12878	blood:	n/a	n/a
12	BCL11A	chr15:52959870-52960234	GM12878	blood:	n/a	n/a
13	BCL3	chr15:52903803-52904255	GM12878	blood:	n/a	chr15:52904073-52904082
14	BCL3	chr15:52945455-52946336	A549	lung:	n/a	n/a
15	BCLAF1	chr15:52959794-52960250	GM12878	blood:	n/a	n/a
16	BHLHE40	chr15:52945318-52945486	K562	blood:	n/a	chr15:52945333-52945349
17	BHLHE40	chr15:52944107-52944358	K562	blood:	n/a	n/a
18	BRCA1	chr15:52945643-52946180	Hela-S3	cervix:	n/a	n/a
19	CEBPB	chr15:52933641-52933834	HepG2	liver:	n/a	n/a
20	CEBPB	chr15:52907458-52908026	MCF-7	breast:	n/a	n/a
21	CEBPB	chr15:52964454-52964525	Hela-S3	cervix:	n/a	chr15:52964496-52964507
22	CEBPB	chr15:52964440-52964615	A549	lung:	n/a	chr15:52964496-52964507
23	CEBPB	chr15:52933638-52933827	A549	lung:	n/a	n/a
24	CEBPB	chr15:52944183-52944569	IMR90	lung:	n/a	n/a
25	CEBPB	chr15:52901471-52901829	K562	blood:	n/a	n/a
26	CEBPB	chr15:52945936-52946254	HepG2	liver:	n/a	chr15:52946081-52946092 chr15:52946079-52946090
27	CEBPB	chr15:52936876-52936976	K562	blood:	n/a	chr15:52936950-52936961 chr15:52936951-52936962
28	CEBPB	chr15:52943348-52943697	IMR90	lung:	n/a	chr15:52943514-52943527 chr15:52943516-52943525 chr15:52943516-52943527 chr15:52943516-52943527 chr15:52943516-52943525 chr15:52943514-52943527 chr15:52943514-52943525 chr15:52943516-52943525 chr15:52943516-52943525 chr15:52943514-52943527
29	CEBPB	chr15:52964466-52964524	K562	blood:	n/a	chr15:52964496-52964507
30	CEBPB	chr15:52943370-52943669	K562	blood:	n/a	chr15:52943514-52943527 chr15:52943516-52943525 chr15:52943516-52943527 chr15:52943516-52943527 chr15:52943516-52943525 chr15:52943514-52943527 chr15:52943514-52943525 chr15:52943516-52943525 chr15:52943516-52943525 chr15:52943514-52943527
31	CEBPB	chr15:52933670-52933788	K562	blood:	n/a	n/a
32	CEBPB	chr15:52919280-52919516	Hela-S3	cervix:	n/a	n/a
33	CEBPB	chr15:52936802-52936996	HepG2	liver:	n/a	chr15:52936950-52936961 chr15:52936951-52936962
34	CEBPB	chr15:52943350-52943656	A549	lung:	n/a	chr15:52943514-52943527 chr15:52943516-52943525 chr15:52943516-52943527 chr15:52943516-52943527 chr15:52943516-52943525 chr15:52943514-52943527 chr15:52943514-52943525 chr15:52943516-52943525 chr15:52943516-52943525 chr15:52943514-52943527
35	CEBPB	chr15:52945936-52946207	K562	blood:	n/a	chr15:52946081-52946092 chr15:52946079-52946090
36	CEBPB	chr15:52943339-52943624	HepG2	liver:	n/a	chr15:52943514-52943527 chr15:52943516-52943525 chr15:52943516-52943527 chr15:52943516-52943527 chr15:52943516-52943525 chr15:52943514-52943527 chr15:52943514-52943525 chr15:52943516-52943525 chr15:52943516-52943525 chr15:52943514-52943527
37	CEBPB	chr15:52945685-52946315	A549	lung:	n/a	chr15:52946081-52946092 chr15:52946079-52946090
38	CEBPB	chr15:52964325-52964644	HepG2	liver:	n/a	chr15:52964496-52964507
39	CEBPB	chr15:52945486-52946271	A549	lung:	n/a	chr15:52946081-52946092 chr15:52946079-52946090
40	CEBPB	chr15:52901866-52901986	H1-hESC	embryonic stem cell:	n/a	n/a
41	CEBPB	chr15:52967229-52967510	A549	lung:	n/a	chr15:52967405-52967416
42	CEBPB	chr15:52967246-52967562	HepG2	liver:	n/a	chr15:52967405-52967416
43	CEBPB	chr15:52945123-52946399	MCF-7	breast:	n/a	chr15:52946081-52946092 chr15:52946079-52946090
44	CEBPB	chr15:52949576-52949943	IMR90	lung:	n/a	n/a
45	CEBPB	chr15:52945576-52946254	Hela-S3	cervix:	n/a	chr15:52946081-52946092 chr15:52946079-52946090
46	CEBPB	chr15:52967264-52967512	IMR90	lung:	n/a	chr15:52967405-52967416
47	CEBPB	chr15:52952097-52952512	A549	lung:	n/a	chr15:52952192-52952200
48	CEBPB	chr15:52964392-52964533	H1-hESC	embryonic stem cell:	n/a	chr15:52964496-52964507
49	CEBPB	chr15:52945200-52946422	A549	lung:	n/a	chr15:52946081-52946092 chr15:52946079-52946090
50	CEBPB	chr15:52945536-52946375	MCF-7	breast:	n/a	chr15:52946081-52946092 chr15:52946079-52946090

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:52954695-52954745	H1-hESC	embryonic stem cell:	embryo
2	chr15:52968154-52968204	NHDF-neo	bronchial:	n/a
3	chr15:52954695-52954745	HL-60	blood:	n/a
4	chr15:52968154-52968204	NB4	blood:	n/a
5	chr15:52968154-52968204	HRE	kidney:	n/a
6	chr15:52954695-52954745	SK-N-SH_RA	brain:	n/a
7	chr15:52968154-52968204	H1-hESC	embryonic stem cell:	embryo
8	chr15:52944233-52944283	GM19239	blood:	n/a
9	chr15:52968154-52968204	AG04450	lung:	fetal
10	chr15:52968154-52968204	BE2_C	brain:	n/a
11	chr15:52944233-52944283	K562	blood:	n/a
12	chr15:52944233-52944283	AG09309	skin:	n/a
13	chr15:52968154-52968204	SAEC	small airway:	n/a
14	chr15:52944233-52944283	IMR90	lung:	fetal
15	chr15:52968154-52968204	K562	blood:	n/a
16	chr15:52968154-52968204	NT2-D1	testis:	n/a
17	chr15:52944233-52944283	BE2_C	brain:	n/a
18	chr15:52944233-52944283	HRPEpiC	eye:	n/a
19	chr15:52968154-52968204	HEEpiC	esophagus:	n/a
20	chr15:52954695-52954745	PrEC	prostate:	n/a
21	chr15:52944233-52944283	Hela-S3	cervix:	n/a
22	chr15:52954695-52954745	HNPCEpiC	eye:	n/a
23	chr15:52954695-52954745	BE2_C	brain:	n/a
24	chr15:52944233-52944283	SK-N-MC	brain:	n/a
25	chr15:52944233-52944283	HAEpiC	amniotic membrane:	n/a
26	chr15:52968154-52968204	NH-A	brain:	n/a
27	chr15:52968154-52968204	HRCEpiC	kidney:	n/a
28	chr15:52968154-52968204	PANC-1	pancreas:	n/a
29	chr15:52968154-52968204	ovcar-3	ovarian:	n/a
30	chr15:52968154-52968204	CMK	blood:	n/a
31	chr15:52954695-52954745	HMEC	breast:	n/a
32	chr15:52954695-52954745	PANC-1	pancreas:	n/a
33	chr15:52968154-52968204	GM19239	blood:	n/a
34	chr15:52954695-52954745	SAEC	small airway:	n/a
35	chr15:52944233-52944283	LNCaP	prostate:	n/a
36	chr15:52944233-52944283	GM12891	blood:	n/a
37	chr15:52954695-52954745	PFSK-1	brain:	n/a
38	chr15:52954695-52954745	ECC-1	luminal epithelium:	n/a
39	chr15:52944233-52944283	HL-60	blood:	n/a
40	chr15:52944233-52944283	Jurkat	blood:	n/a
41	chr15:52954695-52954745	BJ	skin:	n/a
42	chr15:52954695-52954745	HEEpiC	esophagus:	n/a
43	chr15:52968154-52968204	HAEpiC	amniotic membrane:	n/a
44	chr15:52954695-52954745	SK-N-SH	brain:	n/a
45	chr15:52954695-52954745	IMR90	lung:	fetal
46	chr15:52944233-52944283	NHDF-neo	bronchial:	n/a
47	chr15:52944233-52944283	GM06990	blood:	n/a
48	chr15:52944233-52944283	Caco-2	colon:	n/a
49	chr15:52968154-52968204	HepG2	liver:	n/a
50	chr15:52944233-52944283	ProgFib	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:52911171..52913383-chr15:52919987..52922783,2	MCF-7	breast:
2	chr15:52888487..52890518-chr15:52930804..52932790,2	MCF-7	breast:
3	chr15:52960932..52963378-chr15:52964421..52966034,2	K562	blood:
4	chr15:52859855..52863944-chr15:52968349..52971887,6	MCF-7	breast:
5	chr15:52894420..52896293-chr15:52901016..52903644,2	MCF-7	breast:
6	chr15:52932870..52937961-chr15:52968619..52973908,7	MCF-7	breast:
7	chr15:52908250..52909787-chr15:52911134..52913662,2	K562	blood:
8	chr15:52901526..52903725-chr15:52969429..52971741,2	MCF-7	breast:
9	chr15:52902657..52904692-chr15:52908222..52909739,2	MCF-7	breast:
10	chr15:52931242..52933203-chr15:52936397..52938369,2	K562	blood:
11	chr15:52586406..52588610-chr15:52967332..52968864,2	MCF-7	breast:
12	chr15:52917289..52919224-chr15:52944457..52946424,2	MCF-7	breast:
13	chr15:52930180..52932512-chr15:52970750..52972942,2	MCF-7	breast:
14	chr15:52920111..52923064-chr15:52929395..52931419,2	MCF-7	breast:
15	chr15:52945439..52946381-chr15:52970859..52971765,2	MCF-7	breast:
16	chr15:52953361..52955862-chr15:52969925..52972347,2	K562	blood:
17	chr15:52954350..52957098-chr15:52957604..52959910,2	K562	blood:
18	chr15:52909963..52913999-chr15:52916519..52920050,4	MCF-7	breast:
19	chr15:52855861..52857548-chr15:52955887..52958034,2	K562	blood:
20	chr15:52580472..52581982-chr15:52945123..52947114,2	MCF-7	breast:
21	chr15:52856629..52859409-chr15:52967140..52969725,2	K562	blood:
22	chr15:52966230..52968677-chr15:52969167..52971307,2	K562	blood:
23	chr15:52934298..52936704-chr15:52937679..52940087,2	MCF-7	breast:
24	chr15:52929482..52933252-chr15:52937332..52940683,4	MCF-7	breast:
25	chr15:52937720..52940015-chr15:52943665..52945794,2	K562	blood:
26	chr15:52938830..52941710-chr15:52949842..52951854,2	MCF-7	breast:
27	chr15:52954350..52957098-chr15:52957604..52959910,2	K562	blood:
28	chr15:52930586..52932537-chr15:52970234..52972084,2	MCF-7	breast:
29	chr15:52924022..52926250-chr15:52933735..52936192,2	MCF-7	breast:
30	chr15:52946056..52948651-chr15:52958978..52960779,2	MCF-7	breast:
31	chr15:52923566..52926006-chr15:52970797..52972648,2	MCF-7	breast:
32	chr15:52927735..52930583-chr15:52932709..52935463,2	K562	blood:
33	chr15:52950435..52952997-chr15:52969814..52971344,2	K562	blood:
34	chr15:52927735..52930583-chr15:52932709..52935463,2	K562	blood:
35	chr15:52919730..52922195-chr15:52969757..52972620,2	MCF-7	breast:
36	chr15:52931519..52933404-chr15:52936579..52938944,2	MCF-7	breast:
37	chr15:52928061..52930593-chr15:52960432..52963206,2	MCF-7	breast:
38	chr15:52911044..52913155-chr15:52914885..52916943,2	K562	blood:
39	chr15:52860334..52861897-chr15:52949806..52952761,2	MCF-7	breast:
40	chr15:52848678..52850615-chr15:52936480..52938153,2	K562	blood:
41	chr15:52942408..52952117-chr15:52965431..52973600,32	MCF-7	breast:
42	chr14:59104552..59105168-chr15:52912769..52913437,2	HCT-116	colon:
43	chr15:52920111..52923064-chr15:52929395..52931419,2	MCF-7	breast:
44	chr15:52951164..52953709-chr15:52956202..52958313,2	K562	blood:
45	chr15:52924022..52926250-chr15:52933735..52936192,2	MCF-7	breast:
46	chr15:52966586..52968208-chr15:53018199..53019999,2	MCF-7	breast:
47	chr15:52922172..52924304-chr15:52938305..52941001,3	MCF-7	breast:
48	chr15:52906245..52907882-chr15:52919782..52921282,2	MCF-7	breast:
49	chr15:52902657..52904692-chr15:52908222..52909739,2	MCF-7	breast:
50	chr15:52908250..52909787-chr15:52911134..52913662,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARPP19-1	chr15:52940831-52940988	ENSG00000259935.1
2	lnc-ARPP19-2	chr15:52950327-52950994	NONHSAT043941
3	lnc-ARPP19-1	chr15:52941682-52942063	ENSG00000259935.1

Variant related genes	Relation type
ENSG00000259935	TF binding region
FAM214A	TF binding region
ENSG00000259935	CpG island
FAM214A	CpG island
ENSG00000069956	chromatin interactions
ENSG00000165617	chromatin interactions
ENSG00000128989	chromatin interactions
ENSG00000128833	chromatin interactions
ENSG00000259438	chromatin interactions
ENSG00000047346	chromatin interactions

Extended variants
information (count: 2506 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:2506 , 50 per page) page: 1 2 3 4 5 6 7 ... 51

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12915981	chr15:52901433-52901434	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs199989702	chr15:52901487-52901488	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs201593959	chr15:52901504-52901505	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs202054345	chr15:52901522-52901523	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs567480433	chr15:52901537-52901538	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs374441994	chr15:52901548-52901549	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs368846806	chr15:52901556-52901557	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs372967558	chr15:52901566-52901567	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs549552771	chr15:52901567-52901568	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs189010981	chr15:52901586-52901587	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs532047261	chr15:52901598-52901599	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs3751614	chr15:52901638-52901639	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs138707735	chr15:52901652-52901653	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs202204044	chr15:52901658-52901659	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs372458104	chr15:52901660-52901661	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs535860229	chr15:52901664-52901665	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs375700992	chr15:52901666-52901667	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs201375803	chr15:52901669-52901670	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs567841134	chr15:52901671-52901672	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs538466306	chr15:52901681-52901682	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs369822526	chr15:52901683-52901684	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs58950828	chr15:52901739-52901740	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs372718525	chr15:52901753-52901754	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs200373322	chr15:52901775-52901776	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs184661475	chr15:52901789-52901790	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs369009866	chr15:52901802-52901803	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs554299665	chr15:52901817-52901818	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs190376629	chr15:52901860-52901861	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs181790092	chr15:52901865-52901866	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs142767418	chr15:52901882-52901883	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs75512966	chr15:52901887-52901888	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs370658464	chr15:52901889-52901890	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs3751613	chr15:52901914-52901915	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs202234979	chr15:52901930-52901931	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs377679618	chr15:52901942-52901943	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs371209647	chr15:52901953-52901954	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs2414166	chr15:52901977-52901978	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs202140626	chr15:52901988-52901989	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs370446703	chr15:52902060-52902061	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs201191117	chr15:52902066-52902067	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs372900453	chr15:52902071-52902072	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs534233534	chr15:52902089-52902090	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs371831313	chr15:52902124-52902125	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs376429293	chr15:52902133-52902134	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs75977811	chr15:52902171-52902172	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs200513144	chr15:52902211-52902212	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs147348892	chr15:52902248-52902249	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs200481090	chr15:52902314-52902315	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs376021732	chr15:52902315-52902316	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs550407678	chr15:52902319-52902320	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Myelofibrosis	22110671	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:2254 , 50 per page) page: 1 2 3 4 5 6 7 ... 46

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52861200-52925200	Weak transcription	Stomach Mucosa	stomach
2	chr15:52861600-52901600	Weak transcription	Esophagus	oesophagus
3	chr15:52861800-52901600	Weak transcription	A549	lung
4	chr15:52861800-52908400	Weak transcription	Gastric	stomach
5	chr15:52861800-52934800	Weak transcription	Right Ventricle	heart
6	chr15:52862000-52901600	Weak transcription	Brain Angular Gyrus	brain
7	chr15:52869400-52945400	Weak transcription	Small Intestine	intestine
8	chr15:52870200-52905000	Weak transcription	HMEC	breast
9	chr15:52871200-52901600	Weak transcription	Dnd41	blood
10	chr15:52871800-52902200	Weak transcription	Fetal Brain Male	brain
11	chr15:52871800-52967600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:52872200-52933800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:52872600-52920800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:52873400-52928000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:52873800-52909600	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr15:52874200-52917000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:52874800-52944200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:52875400-52916200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:52878200-52909600	Strong transcription	Liver	Liver
20	chr15:52881400-52901600	Weak transcription	Psoas Muscle	Psoas
21	chr15:52882200-52920000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr15:52882400-52906200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr15:52882400-52926000	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr15:52884200-52901600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:52884600-52901600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:52885600-52902000	Weak transcription	NHLF	lung
27	chr15:52885600-52903800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:52885600-52945200	Weak transcription	Spleen	Spleen
29	chr15:52886000-52901600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:52890600-52901600	Weak transcription	Pancreas	Pancrea
31	chr15:52890600-52906000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:52891200-52902000	Weak transcription	Lung	lung
33	chr15:52891200-52903800	Weak transcription	Fetal Intestine Small	intestine
34	chr15:52891400-52901600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:52891400-52927600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:52891600-52908400	Weak transcription	Aorta	Aorta
37	chr15:52893800-52901600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:52894600-52904400	Strong transcription	Primary T cells from cord blood	blood
39	chr15:52894600-52906000	Strong transcription	Fetal Intestine Large	intestine
40	chr15:52895400-52901600	Weak transcription	HepG2	liver
41	chr15:52895400-52902200	Weak transcription	Fetal Heart	heart
42	chr15:52896800-52901600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:52896800-52904200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr15:52896800-52904200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:52897000-52901600	Weak transcription	Colonic Mucosa	Colon
46	chr15:52897000-52901600	Weak transcription	Fetal Muscle Leg	muscle
47	chr15:52897000-52901600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:52897000-52902200	Weak transcription	Fetal Kidney	kidney
49	chr15:52897000-52904400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:52897200-52902800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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