Variant report

Variant	nsv508297
Chromosome Location	chr4:87778783-87868508
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3269)
CpG islands
(count:2386)
Chromatin interactive
region (count:116)
LncRNA
region (count:25)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3269 , 50 per page) page: 1 2 3 4 5 6 7 ... 66

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:87855400-87855659	HepG2	liver:	n/a	n/a
2	ARID3A	chr4:87855861-87856442	HepG2	liver:	n/a	n/a
3	ARID3A	chr4:87858194-87858218	K562	blood:	n/a	n/a
4	ARID3A	chr4:87843493-87843868	HepG2	liver:	n/a	n/a
5	ARID3A	chr4:87854949-87856353	K562	blood:	n/a	n/a
6	ARID3A	chr4:87849174-87849192	K562	blood:	n/a	n/a
7	ARID3A	chr4:87863095-87863954	HepG2	liver:	n/a	n/a
8	ARID3A	chr4:87856997-87857844	HepG2	liver:	n/a	n/a
9	ARID3A	chr4:87863331-87864127	K562	blood:	n/a	n/a
10	ARID3A	chr4:87849017-87849407	HepG2	liver:	n/a	n/a
11	ARID3A	chr4:87856980-87857924	K562	blood:	n/a	n/a
12	ARID3A	chr4:87816895-87817260	HepG2	liver:	n/a	n/a
13	ARID3A	chr4:87862309-87862454	K562	blood:	n/a	n/a
14	ARID3A	chr4:87848198-87848477	HepG2	liver:	n/a	n/a
15	ATF1	chr4:87855236-87856071	K562	blood:	n/a	n/a
16	ATF1	chr4:87862269-87862566	K562	blood:	n/a	n/a
17	ATF1	chr4:87863354-87863788	K562	blood:	n/a	n/a
18	ATF2	chr4:87855462-87855977	GM12878	blood:	n/a	n/a
19	ATF2	chr4:87812810-87813224	H1-hESC	embryonic stem cell:	n/a	n/a
20	ATF2	chr4:87857290-87857747	GM12878	blood:	n/a	n/a
21	ATF2	chr4:87860207-87861524	GM12878	blood:	n/a	n/a
22	ATF2	chr4:87856925-87857755	GM12878	blood:	n/a	n/a
23	ATF2	chr4:87856132-87856395	H1-hESC	embryonic stem cell:	n/a	n/a
24	ATF2	chr4:87812785-87813210	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF2	chr4:87813275-87813880	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF2	chr4:87860520-87861503	GM12878	blood:	n/a	n/a
27	ATF2	chr4:87856619-87857482	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF3	chr4:87857116-87857754	K562	blood:	n/a	n/a
29	ATF3	chr4:87848252-87848836	K562	blood:	n/a	n/a
30	ATF3	chr4:87863323-87863712	K562	blood:	n/a	n/a
31	ATF3	chr4:87855783-87856298	K562	blood:	n/a	chr4:87856095-87856104 chr4:87856046-87856055
32	BACH1	chr4:87780602-87780641	K562	blood:	n/a	n/a
33	BACH1	chr4:87825408-87825470	H1-hESC	embryonic stem cell:	n/a	n/a
34	BACH1	chr4:87855742-87856572	H1-hESC	embryonic stem cell:	n/a	n/a
35	BACH1	chr4:87844411-87844418	K562	blood:	n/a	n/a
36	BACH1	chr4:87857237-87857640	K562	blood:	n/a	chr4:87857421-87857435
37	BACH1	chr4:87857014-87857889	H1-hESC	embryonic stem cell:	n/a	chr4:87857421-87857435
38	BACH1	chr4:87812952-87813629	H1-hESC	embryonic stem cell:	n/a	n/a
39	BATF	chr4:87856994-87857773	GM12878	blood:	n/a	chr4:87857425-87857435
40	BATF	chr4:87860762-87861248	GM12878	blood:	n/a	n/a
41	BCL11A	chr4:87860777-87861267	GM12878	blood:	n/a	n/a
42	BCL3	chr4:87857087-87857750	A549	lung:	n/a	n/a
43	BCL3	chr4:87857105-87857566	A549	lung:	n/a	n/a
44	BCL3	chr4:87855755-87856325	GM12878	blood:	n/a	n/a
45	BCL3	chr4:87860738-87861678	GM12878	blood:	n/a	n/a
46	BCLAF1	chr4:87860682-87861355	GM12878	blood:	n/a	n/a
47	BCLAF1	chr4:87855729-87856412	GM12878	blood:	n/a	n/a
48	BCLAF1	chr4:87857261-87857980	GM12878	blood:	n/a	n/a
49	BCLAF1	chr4:87855722-87856497	GM12878	blood:	n/a	n/a
50	BCLAF1	chr4:87857029-87857919	GM12878	blood:	n/a	n/a

(count:2386 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:87813935-87813985	Jurkat	blood:	n/a
2	chr4:87797676-87797726	SKMC	muscle:	n/a
3	chr4:87856428-87856478	SK-N-SH	brain:	n/a
4	chr4:87810926-87810976	BE2_C	brain:	n/a
5	chr4:87857031-87857081	HRCEpiC	kidney:	n/a
6	chr4:87857031-87857081	BJ	skin:	n/a
7	chr4:87857413-87857463	BJ	skin:	n/a
8	chr4:87813935-87813985	Jurkat	blood:	n/a
9	chr4:87797676-87797726	SKMC	muscle:	n/a
10	chr4:87856428-87856478	SK-N-SH	brain:	n/a
11	chr4:87810926-87810976	BE2_C	brain:	n/a
12	chr4:87857031-87857081	HRCEpiC	kidney:	n/a
13	chr4:87857031-87857081	BJ	skin:	n/a
14	chr4:87857413-87857463	BJ	skin:	n/a
15	chr4:87825274-87825324	NHBE	bronchial:	n/a
16	chr4:87857418-87857468	U87	brain:	n/a
17	chr4:87813709-87813759	ProgFib	skin:	n/a
18	chr4:87865779-87865829	T-47D	breast:	n/a
19	chr4:87855982-87856032	A549	lung:	n/a
20	chr4:87813803-87813853	HEK293	kidney:	embryo
21	chr4:87812668-87812718	AoSMC	blood vessel:	n/a
22	chr4:87797502-87797552	HNPCEpiC	eye:	n/a
23	chr4:87813407-87813457	SAEC	small airway:	n/a
24	chr4:87813803-87813853	AG09309	skin:	n/a
25	chr4:87825274-87825324	Caco-2	colon:	n/a
26	chr4:87849250-87849300	BE2_C	brain:	n/a
27	chr4:87797509-87797559	AG09309	skin:	n/a
28	chr4:87856428-87856478	PrEC	prostate:	n/a
29	chr4:87812668-87812718	IMR90	lung:	fetal
30	chr4:87855959-87856009	BE2_C	brain:	n/a
31	chr4:87813585-87813635	HCPEpiC	choroid plexus:	n/a
32	chr4:87813066-87813116	BJ	skin:	n/a
33	chr4:87813803-87813853	Caco-2	colon:	n/a
34	chr4:87856849-87856899	HepG2	liver:	n/a
35	chr4:87856849-87856899	SK-N-SH	brain:	n/a
36	chr4:87860957-87861007	NH-A	brain:	n/a
37	chr4:87855982-87856032	AG04450	lung:	fetal
38	chr4:87857667-87857717	HCPEpiC	choroid plexus:	n/a
39	chr4:87816983-87817033	HPAEpiC	pulmonary alveolar:	n/a
40	chr4:87852752-87852802	GM12892	blood:	n/a
41	chr4:87825274-87825324	HRCEpiC	kidney:	n/a
42	chr4:87855377-87855427	PANC-1	pancreas:	n/a
43	chr4:87797556-87797606	AG09319	gingival:	n/a
44	chr4:87813935-87813985	GM12892	blood:	n/a
45	chr4:87813709-87813759	Hepatocyte	liver:	n/a
46	chr4:87812668-87812718	AG04449	skin:	fetal
47	chr4:87829966-87830016	HEK293	kidney:	embryo
48	chr4:87810926-87810976	GM06990	blood:	n/a
49	chr4:87856849-87856899	AG09309	skin:	n/a
50	chr4:87797509-87797559	CMK	blood:	n/a

(count:116 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr17:7387417..7387950-chr4:87855939..87856445,2	Hela-S3	cervix:
2	chr4:87820850..87822534-chr4:87830208..87832118,2	MCF-7	breast:
3	chr4:87866229..87868745-chr4:87943992..87946336,2	K562	blood:
4	chr4:87866938..87869563-chr4:87883119..87884691,2	K562	blood:
5	chr4:87843214..87843994-chr4:88014244..88015104,4	MCF-7	breast:
6	chr4:87866421..87869517-chr4:87926538..87929020,3	MCF-7	breast:
7	chr4:87841127..87845186-chr4:87926504..87931446,8	K562	blood:
8	chr4:87856629..87857258-chr4:100870706..100871438,2	Hela-S3	cervix:
9	chr4:87843821..87845327-chr4:88013319..88016028,2	MCF-7	breast:
10	chr4:87842227..87846817-chr4:87925967..87929277,6	MCF-7	breast:
11	chr4:87864190..87869754-chr4:87925812..87929793,8	K562	blood:
12	chr4:87840562..87842094-chr4:87856459..87858099,2	MCF-7	breast:
13	chr4:87855388..87857616-chr4:87927379..87929131,8	MCF-7	breast:
14	chr19:50370328..50370862-chr4:87855882..87856437,2	Hela-S3	cervix:
15	chr4:87776224..87780188-chr4:87811150..87813505,4	MCF-7	breast:
16	chr4:87836003..87837844-chr4:88123291..88126235,2	K562	blood:
17	chr4:87867281..87868896-chr4:87929541..87932174,2	MCF-7	breast:
18	chr4:87831113..87833915-chr4:87837544..87840445,2	K562	blood:
19	chr4:87854708..87860113-chr4:87926348..87930107,23	MCF-7	breast:
20	chr4:87419852..87420552-chr4:87816647..87817499,2	MCF-7	breast:
21	chr4:87866229..87868544-chr4:87942788..87945492,2	K562	blood:
22	chr4:87843288..87844189-chr4:88013665..88015393,4	K562	blood:
23	chr4:87865631..87867433-chr4:87876659..87878502,2	K562	blood:
24	chr4:87854638..87857344-chr4:88139505..88141852,2	K562	blood:
25	chr4:87843608..87844207-chr4:88156694..88157622,2	K562	blood:
26	chr4:87507453..87509396-chr4:87819000..87821913,2	K562	blood:
27	chr4:87867208..87869675-chr4:87927269..87929156,3	MCF-7	breast:
28	chr4:87853595..87871697-chr4:87924007..87941983,77	K562	blood:
29	chr4:87845889..87863516-chr4:87925389..87935181,79	K562	blood:
30	chr4:87833323..87835057-chr4:87926520..87929216,2	K562	blood:
31	chr4:87854791..87857074-chr4:87968149..87971029,2	K562	blood:
32	chr4:87849244..87851531-chr4:87853008..87856022,4	K562	blood:
33	chr4:87848034..87854001-chr4:87854592..87858265,8	MCF-7	breast:
34	chr12:6832818..6833441-chr4:87812969..87813889,2	HCT-116	colon:
35	chr4:87831113..87833915-chr4:87837544..87840445,2	K562	blood:
36	chr4:87857968..87859669-chr4:87867267..87869680,2	MCF-7	breast:
37	chr4:87843646..87844235-chr4:88071692..88072390,2	K562	blood:
38	chr4:87842585..87845353-chr4:87979775..87981630,2	K562	blood:
39	chr4:87574188..87575068-chr4:87816619..87817331,3	K562	blood:
40	chr4:87858278..87859821-chr4:87918030..87920940,2	MCF-7	breast:
41	chr4:87858860..87860584-chr4:87909283..87910972,2	K562	blood:
42	chr4:87855810..87856702-chr8:142011115..142011980,2	Hela-S3	cervix:
43	chr4:87843422..87844230-chr4:88014418..88015268,4	MCF-7	breast:
44	chr4:87443199..87444434-chr4:87816717..87817587,4	MCF-7	breast:
45	chr4:87858518..87860018-chr4:87894461..87896898,2	K562	blood:
46	chr4:87861846..87864713-chr4:88083470..88086069,2	K562	blood:
47	chr4:87845043..87846652-chr4:87847978..87849519,2	MCF-7	breast:
48	chr4:87813108..87815411-chr4:87815518..87817081,3	K562	blood:
49	chr4:87843366..87844046-chr4:87927469..87928269,2	MCF-7	breast:
50	chr4:87827990..87830960-chr4:88140987..88142920,2	K562	blood:

(count:25 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC10A6-2	chr4:87855639-87856002	NONHSAT097291
2	lnc-SLC10A6-2	chr4:87855639-87855694	NONHSAT097292
3	lnc-SLC10A6-2	chr4:87854317-87854694	NONHSAT097292
4	lnc-SLC10A6-2	chr4:87847380-87847478	NONHSAT097286
5	lnc-SLC10A6-1	chr4:87835853-87835970	NONHSAT097288
6	lnc-SLC10A6-2	chr4:87854547-87854694	NONHSAT097291
7	lnc-SLC10A6-2	chr4:87853374-87853471	NONHSAT097290
8	lnc-SLC10A6-1	chr4:87834419-87834986	NONHSAT097288
9	lnc-SLC10A6-2	chr4:87857140-87857320	NONHSAT097290
10	lnc-SLC10A6-2	chr4:87856603-87856959	NONHSAT097293
11	lnc-SLC10A6-2	chr4:87854547-87854694	NONHSAT097286
12	lnc-SLC10A6-2	chr4:87812609-87812746	NONHSAT097286
13	lnc-SLC10A6-2	chr4:87855639-87856091	NONHSAT097289
14	lnc-PTPN13-1	chr4:87791344-87792176	NONHSAT097284
15	lnc-SLC10A6-2	chr4:87846046-87847478	NONHSAT097291
16	lnc-SLC10A6-1	chr4:87835118-87835541	NONHSAT097288
17	lnc-PTPN13-1	chr4:87792530-87792557	NONHSAT097284
18	lnc-SLC10A6-2	chr4:87854547-87854694	NONHSAT097289
19	lnc-SLC10A6-2	chr4:87846046-87847478	NONHSAT097290
20	lnc-SLC10A6-2	chr4:87857140-87857330	NONHSAT097286
21	lnc-SLC10A6-2	chr4:87809293-87809424	NONHSAT097286
22	lnc-SLC10A6-2	chr4:87843242-87844887	NONHSAT097289
23	lnc-SLC10A6-2	chr4:87857140-87857354	NONHSAT097293
24	lnc-SLC10A6-2	chr4:87854547-87854694	NONHSAT097290
25	lnc-AFF1-3	chr4:87797491-87797805	NONHSAT097285

No data

Variant related genes	Relation type
ENSG00000251411	TF binding region
ENSG00000243312	TF binding region
ENSG00000250202	TF binding region
AFF1	TF binding region
C4orf36	TF binding region
ENSG00000251411	CpG island
ENSG00000243312	CpG island
ENSG00000250202	CpG island
AFF1	CpG island
C4orf36	CpG island
ENSG00000133316	chromatin interactions
ENSG00000163629	chromatin interactions
ENSG00000181222	chromatin interactions
ENSG00000245322	chromatin interactions
ENSG00000164032	chromatin interactions
ENSG00000145623	chromatin interactions
ENSG00000163633	chromatin interactions
ENSG00000172493	chromatin interactions
ENSG00000145332	chromatin interactions
ENSG00000174282	chromatin interactions
ENSG00000150628	chromatin interactions
ENSG00000235043	chromatin interactions
ENSG00000111652	chromatin interactions
ENSG00000175611	chromatin interactions
ENSG00000182150	chromatin interactions
ENSG00000109339	chromatin interactions
ENSG00000039650	chromatin interactions
ENSG00000169398	chromatin interactions
ENSG00000204256	chromatin interactions

Extended variants
information (count: 3305 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:3305 , 50 per page) page: 1 2 3 4 5 6 7 ... 67

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555283802	chr4:87778886-87778887	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs76535466	chr4:87778887-87778888	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs543436541	chr4:87778893-87778894	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs374332757	chr4:87778894-87778895	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs185868915	chr4:87778898-87778899	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs111476779	chr4:87778904-87778905	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs576771420	chr4:87778932-87778933	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs541072516	chr4:87778982-87778983	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs79474752	chr4:87778989-87778990	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs74343555	chr4:87778999-87779000	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs541651684	chr4:87779011-87779012	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs551965633	chr4:87779012-87779013	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs563239476	chr4:87779013-87779014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs190331946	chr4:87779016-87779017	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs146674280	chr4:87779026-87779027	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs573363664	chr4:87779057-87779058	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs532424682	chr4:87779058-87779059	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs28682481	chr4:87779081-87779082	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs13106349	chr4:87779085-87779086	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs536816878	chr4:87779122-87779123	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs377138528	chr4:87779129-87779130	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs575730026	chr4:87779183-87779184	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs555246761	chr4:87779184-87779185	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs28439108	chr4:87779200-87779201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs537708774	chr4:87779202-87779203	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs140227344	chr4:87779265-87779266	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs576744044	chr4:87779266-87779267	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs565320623	chr4:87779286-87779287	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs549826888	chr4:87779307-87779308	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs577640458	chr4:87779309-87779310	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs534357187	chr4:87779395-87779396	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs369636665	chr4:87779418-87779419	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs552630360	chr4:87779495-87779496	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs560969895	chr4:87779561-87779562	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs530002215	chr4:87779593-87779594	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs72665798	chr4:87779605-87779606	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs541615128	chr4:87779608-87779609	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs563105618	chr4:87779609-87779610	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs575102823	chr4:87779648-87779649	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs35161489	chr4:87779688-87779689	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs2705623	chr4:87779724-87779725	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs564240993	chr4:87779742-87779743	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs532520999	chr4:87779767-87779768	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs369751731	chr4:87779771-87779772	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs553843504	chr4:87779773-87779774	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs79553016	chr4:87779783-87779784	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs111743631	chr4:87779820-87779821	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs74368993	chr4:87779824-87779825	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs557239205	chr4:87779825-87779826	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs186412019	chr4:87779900-87779901	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Parkinson disease	21956041	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelodysplastic syndrome	21251322	CNVD
Multiple myeloma	17550852	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	18414403	CNVD
primary effusion lymphomas	17116491	CNVD
Olfactory neuroblastoma	18408657	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Hepatocellular carcinoma	22267523	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2607 , 50 per page) page: 1 2 3 4 5 6 7 ... 53

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87771600-87785600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr4:87775800-87779200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:87776200-87778800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:87776200-87779000	Enhancers	HMEC	breast
5	chr4:87776200-87779200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:87776200-87779600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:87776400-87779200	Enhancers	NHEK	skin
8	chr4:87776400-87779600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:87776600-87779000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:87776800-87778800	Enhancers	Hela-S3	cervix
11	chr4:87778000-87778800	Enhancers	HUVEC	blood vessel
12	chr4:87778000-87779800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr4:87778200-87779600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr4:87778400-87778800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr4:87778600-87778800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
16	chr4:87778600-87778800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:87778600-87778800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:87778600-87778800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:87778600-87778800	Enhancers	Fetal Intestine Large	intestine
20	chr4:87778600-87779000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr4:87778600-87779000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:87778600-87779000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
23	chr4:87778600-87779200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:87778600-87779200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
25	chr4:87778600-87779200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
26	chr4:87778800-87779000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
27	chr4:87778800-87779000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
28	chr4:87778800-87779200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:87778800-87779600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:87778800-87780600	Weak transcription	Fetal Intestine Large	intestine
31	chr4:87779000-87779400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr4:87779000-87779600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
33	chr4:87779000-87779600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
34	chr4:87779000-87779800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr4:87779200-87779600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
36	chr4:87779200-87779600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
37	chr4:87779200-87779800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:87779200-87798400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:87779600-87780800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:87779600-87786600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:87780600-87782200	Enhancers	Fetal Intestine Large	intestine
42	chr4:87780800-87781400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:87780800-87781600	Enhancers	Stomach Mucosa	stomach
44	chr4:87781200-87781400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr4:87781400-87782000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:87782000-87782200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr4:87784600-87785000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chr4:87785000-87799400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:87791400-87792400	Enhancers	Primary B cells from peripheral blood	blood
50	chr4:87791600-87791800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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