Variant report

Variant	nsv508683
Chromosome Location	chr1:194450574-194475836
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:194465951-194466182	IMR90	lung:	n/a	chr1:194466086-194466097
2	CEBPB	chr1:194465936-194466208	HepG2	liver:	n/a	chr1:194466086-194466097
3	CTCF	chr1:194467253-194467289	GM12878	blood:	n/a	n/a
4	CTCF	chr1:194465280-194465327	Medullo	brain:	n/a	n/a
5	FOS	chr1:194467437-194467637	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr1:194467460-194467528	MCF10A-Er-Src	breast:	n/a	n/a
7	FOXA1	chr1:194467218-194467517	T-47D	breast:	n/a	chr1:194467391-194467403
8	GATA3	chr1:194474914-194475060	SH-SY5Y	brain:	n/a	n/a
9	KAP1	chr1:194473636-194473735	K562	blood:	n/a	n/a
10	KAP1	chr1:194464780-194465208	HEK293	kidney:	n/a	n/a
11	NRF1	chr1:194471145-194471317	GM12878	blood:	n/a	n/a
12	POLR2A	chr1:194468226-194468270	MCF-7	breast:	n/a	n/a
13	POLR2A	chr1:194454984-194455155	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr1:194458499-194458567	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr1:194455986-194456039	MCF10A-Er-Src	breast:	n/a	n/a
16	POLR2A	chr1:194454968-194455073	GM12878	blood:	n/a	n/a
17	POLR2A	chr1:194471122-194471217	GM12878	blood:	n/a	n/a
18	POLR2A	chr1:194468872-194468967	MCF10A-Er-Src	breast:	n/a	n/a
19	POLR2A	chr1:194467564-194467894	SK-N-MC	brain:	n/a	n/a
20	POLR2A	chr1:194464747-194464782	Gliobla	brain:	n/a	n/a
21	RUNX3	chr1:194456413-194456607	GM12878	blood:	n/a	n/a
22	RUNX3	chr1:194456341-194456565	GM12878	blood:	n/a	n/a
23	SETDB1	chr1:194464821-194465069	U2OS	brain:	n/a	n/a
24	SPI1	chr1:194456363-194456642	GM12891	blood:	n/a	n/a
25	SPI1	chr1:194456393-194456580	GM12878	blood:	n/a	n/a
26	SPI1	chr1:194456356-194456659	GM12891	blood:	n/a	n/a
27	ZNF143	chr1:194464947-194465078	H1-hESC	embryonic stem cell:	n/a	n/a
28	ZNF384	chr1:194472487-194472527	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:194450165..194451814-chr1:194453131..194454944,2	MCF-7	breast:
2	chr1:194470680..194473383-chr1:194480491..194482592,2	K562	blood:
3	chr1:194450165..194451814-chr1:194453131..194454944,2	MCF-7	breast:

Variant related genes	Relation type
RNU6-983P	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534441194	chr1:194458502-194458503	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs74131728	chr1:194458525-194458526	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs541752221	chr1:194470755-194470756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs545824694	chr1:194470788-194470789	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs540508979	chr1:194470793-194470794	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs563923922	chr1:194470798-194470799	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs528224485	chr1:194470811-194470812	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs546705432	chr1:194470812-194470813	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs150505344	chr1:194470829-194470830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs184550161	chr1:194470847-194470848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs377431184	chr1:194470852-194470853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs189387108	chr1:194470871-194470872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs568518940	chr1:194470880-194470881	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs569090848	chr1:194470883-194470884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs557733376	chr1:194470924-194470925	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs531614535	chr1:194470965-194470966	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs114245840	chr1:194470975-194470976	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs551797357	chr1:194470979-194470980	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs565657746	chr1:194471000-194471001	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Mental retardation	21062444	CNVD
Liver carcinoma	19366792	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194470600-194471000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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