Variant report

Variant	nsv517975
Chromosome Location	chr9:15286446-15534070
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4974)
CpG islands
(count:1894)
Chromatin interactive
region (count:124)
LncRNA
region (count:16)
Mature miRNA
region (count: 0)
miRNA target
sites (count:6)

(count:4974 , 50 per page) page: 1 2 3 4 5 6 7 ... 100

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:15333319-15333669	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:15479957-15480401	HepG2	liver:	n/a	n/a
3	ARID3A	chr9:15307077-15307551	HepG2	liver:	n/a	n/a
4	ARID3A	chr9:15422654-15422834	K562	blood:	n/a	n/a
5	ARID3A	chr9:15351035-15351548	HepG2	liver:	n/a	n/a
6	ARID3A	chr9:15423509-15423900	K562	blood:	n/a	n/a
7	ARID3A	chr9:15422587-15422682	HepG2	liver:	n/a	n/a
8	ARID3A	chr9:15306129-15306386	HepG2	liver:	n/a	n/a
9	ARID3A	chr9:15529836-15529927	K562	blood:	n/a	n/a
10	ARID3A	chr9:15416889-15417137	HepG2	liver:	n/a	n/a
11	ARID3A	chr9:15426284-15426484	K562	blood:	n/a	n/a
12	ARID3A	chr9:15350374-15350711	HepG2	liver:	n/a	n/a
13	ARID3A	chr9:15510964-15511424	K562	blood:	n/a	n/a
14	ARID3A	chr9:15423654-15424033	HepG2	liver:	n/a	n/a
15	ARID3A	chr9:15403256-15403512	K562	blood:	n/a	n/a
16	ARID3A	chr9:15403228-15403452	HepG2	liver:	n/a	n/a
17	ARID3A	chr9:15357028-15357575	HepG2	liver:	n/a	n/a
18	ATF1	chr9:15510864-15511555	K562	blood:	n/a	n/a
19	ATF1	chr9:15299673-15299858	K562	blood:	n/a	n/a
20	ATF1	chr9:15416926-15417228	K562	blood:	n/a	n/a
21	ATF1	chr9:15287263-15287635	K562	blood:	n/a	n/a
22	ATF1	chr9:15386543-15386855	K562	blood:	n/a	n/a
23	ATF1	chr9:15293783-15294043	K562	blood:	n/a	n/a
24	ATF2	chr9:15531390-15531836	GM12878	blood:	n/a	n/a
25	ATF2	chr9:15510476-15511627	GM12878	blood:	n/a	n/a
26	ATF2	chr9:15422346-15422848	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF2	chr9:15422425-15422861	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF2	chr9:15425980-15426551	GM12878	blood:	n/a	n/a
29	ATF2	chr9:15510877-15511546	GM12878	blood:	n/a	n/a
30	ATF2	chr9:15529514-15530431	GM12878	blood:	n/a	n/a
31	ATF2	chr9:15511041-15511502	H1-hESC	embryonic stem cell:	n/a	n/a
32	ATF2	chr9:15475829-15476605	GM12878	blood:	n/a	n/a
33	ATF2	chr9:15422403-15423034	GM12878	blood:	n/a	n/a
34	ATF2	chr9:15510945-15511509	H1-hESC	embryonic stem cell:	n/a	n/a
35	ATF2	chr9:15416815-15417288	H1-hESC	embryonic stem cell:	n/a	n/a
36	ATF2	chr9:15529444-15530413	GM12878	blood:	n/a	n/a
37	ATF2	chr9:15513099-15513786	H1-hESC	embryonic stem cell:	n/a	n/a
38	ATF2	chr9:15416859-15417296	H1-hESC	embryonic stem cell:	n/a	n/a
39	ATF2	chr9:15461752-15462226	GM12878	blood:	n/a	n/a
40	ATF2	chr9:15476058-15476577	GM12878	blood:	n/a	n/a
41	ATF2	chr9:15426044-15426358	GM12878	blood:	n/a	n/a
42	ATF3	chr9:15416909-15417257	K562	blood:	n/a	n/a
43	ATF3	chr9:15422610-15422838	K562	blood:	n/a	n/a
44	ATF3	chr9:15510742-15510991	K562	blood:	n/a	chr9:15510783-15510792
45	BACH1	chr9:15510100-15510268	H1-hESC	embryonic stem cell:	n/a	n/a
46	BACH1	chr9:15370513-15370989	H1-hESC	embryonic stem cell:	n/a	n/a
47	BACH1	chr9:15328520-15328827	K562	blood:	n/a	n/a
48	BACH1	chr9:15328555-15328874	H1-hESC	embryonic stem cell:	n/a	n/a
49	BACH1	chr9:15533280-15533522	H1-hESC	embryonic stem cell:	n/a	n/a
50	BACH1	chr9:15306339-15306925	H1-hESC	embryonic stem cell:	n/a	n/a

(count:1894 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:15510574-15510624	AG10803	skin:	n/a
2	chr9:15511094-15511144	SAEC	small airway:	n/a
3	chr9:15401531-15401581	HCM	heart:	n/a
4	chr9:15510574-15510624	AG10803	skin:	n/a
5	chr9:15511094-15511144	SAEC	small airway:	n/a
6	chr9:15401531-15401581	HCM	heart:	n/a
7	chr9:15511220-15511270	CMK	blood:	n/a
8	chr9:15511231-15511281	HRE	kidney:	n/a
9	chr9:15422769-15422819	AG09309	skin:	n/a
10	chr9:15527817-15527867	HIPEpiC	eye:	n/a
11	chr9:15422993-15423043	HCF	heart:	n/a
12	chr9:15510228-15510278	GM19239	blood:	n/a
13	chr9:15371248-15371298	PFSK-1	brain:	n/a
14	chr9:15527817-15527867	HEEpiC	esophagus:	n/a
15	chr9:15511094-15511144	HepG2	liver:	n/a
16	chr9:15511094-15511144	ECC-1	luminal epithelium:	n/a
17	chr9:15510574-15510624	Hepatocyte	liver:	n/a
18	chr9:15511094-15511144	U87	brain:	n/a
19	chr9:15511220-15511270	HUVEC	blood vessel:	n/a
20	chr9:15507365-15507415	HEEpiC	esophagus:	n/a
21	chr9:15310979-15311029	HRCEpiC	kidney:	n/a
22	chr9:15511503-15511553	HRE	kidney:	n/a
23	chr9:15423182-15423232	HAEpiC	amniotic membrane:	n/a
24	chr9:15511094-15511144	RPTEC	kidney:	n/a
25	chr9:15510228-15510278	K562	blood:	n/a
26	chr9:15511503-15511553	AG09309	skin:	n/a
27	chr9:15423182-15423232	GM12891	blood:	n/a
28	chr9:15422769-15422819	K562	blood:	n/a
29	chr9:15511231-15511281	HMEC	breast:	n/a
30	chr9:15306736-15306786	NT2-D1	testis:	n/a
31	chr9:15510228-15510278	HepG2	liver:	n/a
32	chr9:15510857-15510907	SK-N-SH	brain:	n/a
33	chr9:15510857-15510907	NHDF-neo	bronchial:	n/a
34	chr9:15509362-15509412	SK-N-SH	brain:	n/a
35	chr9:15371248-15371298	U87	brain:	n/a
36	chr9:15307376-15307426	HepG2	liver:	n/a
37	chr9:15371248-15371298	NHDF-neo	bronchial:	n/a
38	chr9:15511503-15511553	SKMC	muscle:	n/a
39	chr9:15527817-15527867	HRCEpiC	kidney:	n/a
40	chr9:15306736-15306786	HEK293	kidney:	embryo
41	chr9:15306337-15306387	MCF10A-Er-Src	breast:	n/a
42	chr9:15510574-15510624	AG04450	lung:	fetal
43	chr9:15422943-15422993	HNPCEpiC	eye:	n/a
44	chr9:15371248-15371298	Jurkat	blood:	n/a
45	chr9:15423182-15423232	MCF-7	breast:	n/a
46	chr9:15510461-15510511	Jurkat	blood:	n/a
47	chr9:15422376-15422426	MCF-7	breast:	n/a
48	chr9:15371248-15371298	Hepatocyte	liver:	n/a
49	chr9:15511358-15511408	Hela-S3	cervix:	n/a
50	chr9:15511220-15511270	HEEpiC	esophagus:	n/a

(count:124 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr9:15277682..15279519-chr9:15415467..15418240,3	MCF-7	breast:
2	chr1:205782053..205782858-chr9:15422168..15422987,2	HCT-116	colon:
3	chr9:15385459..15387196-chr9:15436159..15438276,2	K562	blood:
4	chr9:15298408..15301257-chr9:15344895..15347811,2	MCF-7	breast:
5	chr9:15372087..15374863-chr9:15401359..15403431,2	MCF-7	breast:
6	chr9:15478524..15480549-chr9:15486729..15489229,2	MCF-7	breast:
7	chr9:15306135..15309581-chr9:15420818..15425516,6	MCF-7	breast:
8	chr9:15454833..15458437-chr9:15459733..15463748,4	K562	blood:
9	chr9:15485567..15487511-chr9:15490799..15493876,3	K562	blood:
10	chr9:15393231..15396045-chr9:15401354..15402871,2	MCF-7	breast:
11	chr9:15418505..15420597-chr9:15421286..15424516,4	MCF-7	breast:
12	chr9:15352501..15354066-chr9:15419261..15422025,2	MCF-7	breast:
13	chr9:15422069..15423659-chr9:15430578..15433740,3	K562	blood:
14	chr9:15211338..15211919-chr9:15356761..15357369,2	MCF-7	breast:
15	chr9:15415166..15416789-chr9:15420978..15423004,2	MCF-7	breast:
16	chr9:15372087..15374863-chr9:15401359..15403431,2	MCF-7	breast:
17	chr9:15422138..15423750-chr9:15430824..15433204,2	K562	blood:
18	chr9:15497676..15499594-chr9:15514470..15516149,2	MCF-7	breast:
19	chr9:15509655..15511884-chr9:15514283..15517212,3	MCF-7	breast:
20	chr9:15422138..15423750-chr9:15430824..15433204,2	K562	blood:
21	chr9:15277764..15278338-chr9:15416698..15417388,2	MCF-7	breast:
22	chr9:15450513..15453468-chr9:15464401..15466619,2	K562	blood:
23	chr9:15422994..15424695-chr9:15475354..15478030,2	K562	blood:
24	chr9:15463673..15465886-chr9:15466740..15469405,2	K562	blood:
25	chr9:15273274..15274780-chr9:15289457..15291065,2	K562	blood:
26	chr12:7052754..7053671-chr9:15422600..15423100,2	Hela-S3	cervix:
27	chr9:15298942..15301605-chr9:15420446..15422025,2	MCF-7	breast:
28	chr9:15459149..15461861-chr9:15462979..15465406,2	K562	blood:
29	chr9:15386697..15389614-chr9:15422790..15424352,2	K562	blood:
30	chr9:15420595..15424773-chr9:15424796..15433036,11	MCF-7	breast:
31	chr9:15510312..15513012-chr9:15513420..15514921,2	K562	blood:
32	chr9:15500423..15502861-chr9:15505705..15507539,3	K562	blood:
33	chr9:15305709..15307336-chr9:15348928..15350627,2	MCF-7	breast:
34	chr9:15460438..15462914-chr9:15467328..15469967,2	K562	blood:
35	chr9:15393231..15396045-chr9:15401354..15402871,2	MCF-7	breast:
36	chr9:15511224..15513667-chr9:15516724..15518268,2	K562	blood:
37	chr9:15421340..15424109-chr9:15510012..15511838,2	K562	blood:
38	chr9:15466603..15468286-chr9:15468644..15471427,2	K562	blood:
39	chr9:15303560..15305523-chr9:15350040..15352891,2	MCF-7	breast:
40	chr9:15422934..15425831-chr9:15427630..15429287,2	K562	blood:
41	chr9:15463673..15465886-chr9:15466740..15469405,2	K562	blood:
42	chr9:15293831..15297894-chr9:15305171..15308300,4	MCF-7	breast:
43	chr9:15298942..15301605-chr9:15420446..15422025,2	MCF-7	breast:
44	chr9:15510403..15512119-chr9:15516919..15518617,2	MCF-7	breast:
45	chr9:15465896..15468103-chr9:15469052..15471427,2	K562	blood:
46	chr9:15469088..15470656-chr9:15499261..15501124,2	K562	blood:
47	chr9:15499825..15503546-chr9:15507865..15511009,5	MCF-7	breast:
48	chr9:15512114..15513693-chr9:15523609..15526046,2	MCF-7	breast:
49	chr9:15290133..15292362-chr9:15306023..15308672,3	MCF-7	breast:
50	chr9:15300090..15302521-chr9:15304681..15306725,2	MCF-7	breast:

(count:16 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTC39B-5	chr9:15489268-15489438	NONHSAT130267
2	lnc-TTC39B-5	chr9:15510815-15510944	NONHSAT130267
3	lnc-PSIP1-1	chr9:15462224-15462521	expReg_chr9_993_-
4	lnc-SNAPC3-2	chr9:15348166-15348453	NONHSAT130262
5	lnc-TTC39B-5	chr9:15510815-15510989	NONHSAT130268
6	lnc-TTC39B-5	chr9:15510815-15510987	NONHSAT130269
7	lnc-TTC39B-5	chr9:15506559-15506635	NONHSAT130267
8	lnc-TTC39B-5	chr9:15510115-15510327	NONHSAT130267
9	lnc-C9orf93-5	chr9:15454152-15454489	predAs_ge08_PSIP1_1
10	lnc-TTC39B-5	chr9:15504957-15506635	NONHSAT130269
11	lnc-PSIP1-2	chr9:15525782-15526079	NONHSAT130270
12	lnc-TTC39B-5	chr9:15510115-15510327	NONHSAT130269
13	lnc-TTC39B-5	chr9:15510115-15510324	NONHSAT130268
14	lnc-TTC39B-5	chr9:15491950-15492223	NONHSAT130268
15	lnc-TTC39B-5	chr9:15489984-15490122	NONHSAT130267
16	lnc-TTC39B-5	chr9:15506559-15506635	NONHSAT130268

No data

(count:6 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	PSIP1	hsa-miR-1	chr9:15470760-15470781
2	PSIP1	hsa-miR-155-5p	chr9:15471022-15471044
3	PSIP1	hsa-miR-155-5p	chr9:15471175-15471168
4	PSIP1	hsa-miR-155-5p	chr9:15471262-15471283
5	PSIP1	hsa-miR-375	chr9:15465204-15465225
6	PSIP1	hsa-miR-155-5p	chr9:15471169-15471191

Variant related genes	Relation type
FTH1P12	TF binding region
PSIP1	TF binding region
RN7SL98P	TF binding region
RNU6-319P	TF binding region
SNAPC3	TF binding region
RPL7P33	TF binding region
RN7SL157P	TF binding region
TTC39B	TF binding region
FTH1P12	CpG island
PSIP1	CpG island
RN7SL98P	CpG island
RNU6-319P	CpG island
SNAPC3	CpG island
RPL7P33	CpG island
RN7SL157P	CpG island
TTC39B	CpG island
ENSG00000164985	chromatin interactions
ENSG00000111678	chromatin interactions
ENSG00000164989	chromatin interactions
ENSG00000164975	chromatin interactions
ENSG00000133065	chromatin interactions
ENSG00000163755	chromatin interactions
ENSG00000065882	chromatin interactions
ENSG00000177000	chromatin interactions
ENSG00000137497	chromatin interactions
ENSG00000232485	chromatin interactions
ENSG00000263817	chromatin interactions
ENSG00000136450	chromatin interactions
ENSG00000198374	chromatin interactions
ENSG00000197756	chromatin interactions
ENSG00000251834	chromatin interactions
ENSG00000158710	chromatin interactions
ENSG00000238923	chromatin interactions
ENSG00000155158	chromatin interactions
ENSG00000011021	chromatin interactions
ENSG00000091436	chromatin interactions

Extended variants
information (count: 11234 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:11234 , 50 per page) page: 1 2 3 4 5 6 7 ... 225

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2890998	chr9:15286446-15286447	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs145650914	chr9:15286488-15286489	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs575395678	chr9:15286525-15286526	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs7023864	chr9:15286588-15286589	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs10810368	chr9:15286744-15286745	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs572930756	chr9:15286745-15286746	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs199855284	chr9:15286829-15286830	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs72700673	chr9:15286848-15286849	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs187927980	chr9:15286849-15286850	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs561706241	chr9:15286855-15286856	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs529371262	chr9:15286878-15286879	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs544689274	chr9:15286977-15286978	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs145199530	chr9:15286985-15286986	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs148704009	chr9:15286989-15286990	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs567388427	chr9:15286991-15286992	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs374914858	chr9:15286999-15287000	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs113948469	chr9:15287017-15287018	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs372132605	chr9:15287018-15287019	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs574456857	chr9:15287049-15287050	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs536370888	chr9:15287075-15287076	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs527952972	chr9:15287103-15287104	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs546629981	chr9:15287104-15287105	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs2616751	chr9:15287121-15287122	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs192349906	chr9:15287181-15287182	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs142361471	chr9:15287204-15287205	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs35888126	chr9:15287207-15287208	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs151264870	chr9:15287229-15287230	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs539598485	chr9:15287246-15287247	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs3933784	chr9:15287247-15287248	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs572818115	chr9:15287273-15287274	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs140601249	chr9:15287311-15287312	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs144113332	chr9:15287335-15287336	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs573968078	chr9:15287347-15287348	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs74915133	chr9:15287355-15287356	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs12351114	chr9:15287364-15287365	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs3933785	chr9:15287389-15287390	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs184611712	chr9:15287394-15287395	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs560629967	chr9:15287405-15287406	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs527996646	chr9:15287453-15287454	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs146485739	chr9:15287486-15287487	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs188513581	chr9:15287493-15287494	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs554925902	chr9:15287518-15287519	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs374953572	chr9:15287546-15287547	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs386733003	chr9:15287653-15287654	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs528867359	chr9:15287673-15287674	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs550432612	chr9:15287695-15287696	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs568957845	chr9:15287701-15287702	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs369500538	chr9:15287714-15287715	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs551163956	chr9:15287745-15287746	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs192867483	chr9:15287761-15287762	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	21811587	CNVD
Cancer	17440070	CNVD

Chromatin state (count:5606 , 50 per page) page: 1 2 3 4 5 6 7 ... 113

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15243000-15293400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:15250200-15288200	Weak transcription	Fetal Stomach	stomach
3	chr9:15254000-15293000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:15254200-15293000	Weak transcription	NHEK	skin
5	chr9:15254200-15295600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:15259200-15293400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:15273600-15293400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:15274000-15288400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:15274000-15288400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:15277000-15292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:15277000-15293000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:15277600-15288400	Weak transcription	Lung	lung
13	chr9:15277600-15296800	Weak transcription	Gastric	stomach
14	chr9:15278000-15295200	Weak transcription	Pancreas	Pancrea
15	chr9:15278200-15289400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:15278600-15291200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:15279600-15287400	Weak transcription	Small Intestine	intestine
18	chr9:15279800-15293200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr9:15280800-15288600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr9:15281600-15289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:15283400-15287200	Weak transcription	HepG2	liver
22	chr9:15283600-15293800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr9:15284800-15287000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:15285000-15287600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:15285200-15293800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:15285800-15286800	Enhancers	Primary hematopoietic stem cells	blood
27	chr9:15285800-15286800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:15285800-15286800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr9:15285800-15287400	Enhancers	Fetal Intestine Large	intestine
30	chr9:15285800-15287400	Enhancers	Fetal Intestine Small	intestine
31	chr9:15286000-15286600	Enhancers	Primary B cells from peripheral blood	blood
32	chr9:15286000-15286800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr9:15286000-15286800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr9:15286000-15286800	Enhancers	Colonic Mucosa	Colon
35	chr9:15286000-15287000	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr9:15286000-15287000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr9:15286000-15287200	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr9:15286000-15287600	Enhancers	Primary T cells from cord blood	blood
39	chr9:15286000-15287600	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr9:15286000-15287600	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr9:15286000-15287600	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr9:15286000-15287600	Enhancers	Stomach Mucosa	stomach
43	chr9:15286200-15286600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:15286200-15286600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr9:15286200-15286800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:15286200-15286800	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr9:15286200-15287600	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr9:15286400-15286800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr9:15286400-15286800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:15286400-15289400	Weak transcription	H9 Cell Line	embryonic stem cell

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