Variant report

Variant	nsv521577
Chromosome Location	chr6:166628089-166631191
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:94 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6913320	chr6:166628089-166628090	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs574170175	chr6:166628162-166628163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs541478877	chr6:166628187-166628188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs114775957	chr6:166628208-166628209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs530718913	chr6:166628228-166628229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs564175007	chr6:166628231-166628232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs546077388	chr6:166628245-166628246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs181622608	chr6:166628277-166628278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs73267420	chr6:166628311-166628312	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs6456059	chr6:166628329-166628330	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs376905042	chr6:166628375-166628376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs568590267	chr6:166628386-166628387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs138258043	chr6:166628387-166628388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs368210783	chr6:166628413-166628414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs112939762	chr6:166628425-166628426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs569184299	chr6:166628430-166628431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs207467589	chr6:166628462-166628463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs186578969	chr6:166628532-166628533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs189418196	chr6:166628534-166628535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs566756100	chr6:166628545-166628546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs181305494	chr6:166628552-166628553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs543067859	chr6:166628652-166628653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs6935186	chr6:166628654-166628655	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs574205703	chr6:166628658-166628659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376368843	chr6:166628684-166628685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs369575586	chr6:166628789-166628790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs116427144	chr6:166628806-166628807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs530238025	chr6:166628811-166628812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs369219052	chr6:166628821-166628822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs556729088	chr6:166628969-166628970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs375725469	chr6:166629075-166629076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575167388	chr6:166629173-166629174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs186146337	chr6:166629179-166629180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs189764138	chr6:166629210-166629211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs562437998	chr6:166629222-166629223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs61676494	chr6:166629231-166629232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs373538092	chr6:166629344-166629345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs528366160	chr6:166629393-166629394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs183523446	chr6:166629490-166629491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs561824872	chr6:166629527-166629528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs529407558	chr6:166629536-166629537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs551048351	chr6:166629543-166629544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs376547402	chr6:166629604-166629605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs569196028	chr6:166629663-166629664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs533342910	chr6:166629680-166629681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs143592916	chr6:166629707-166629708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs186324241	chr6:166629737-166629738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs190649924	chr6:166629738-166629739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs549171218	chr6:166629790-166629791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs567518409	chr6:166629863-166629864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Ependymoma	20639864	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166619000-166633200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:166622000-166629400	Weak transcription	Dnd41	blood

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