Variant report

Variant	nsv522962
Chromosome Location	chr1:194035948-194036654
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:194034954..194036751-chr1:194037029..194038550,2	MCF-7	breast:
2	chr1:194030362..194032550-chr1:194034091..194036103,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs634899	chr1:194035948-194035949	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs61831388	chr1:194035951-194035952	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs568352109	chr1:194036063-194036064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560334682	chr1:194036105-194036106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs575145693	chr1:194036126-194036127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs635780	chr1:194036148-194036149	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs74131287	chr1:194036182-194036183	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs561677270	chr1:194036206-194036207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs528877243	chr1:194036338-194036339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550593401	chr1:194036339-194036340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs34243822	chr1:194036354-194036355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs568959256	chr1:194036366-194036367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs188208056	chr1:194036371-194036372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs551576906	chr1:194036391-194036392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs624023	chr1:194036457-194036458	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs35590076	chr1:194036462-194036463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs534039803	chr1:194036469-194036470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs555378394	chr1:194036534-194036535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs17615410	chr1:194036579-194036580	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs537834657	chr1:194036581-194036582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs34873141	chr1:194036602-194036603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs10921493	chr1:194036608-194036609	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs577687891	chr1:194036612-194036613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs10921494	chr1:194036638-194036639	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs648371	chr1:194036654-194036655	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Mental retardation	21062444	CNVD
Liver carcinoma	19366792	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194030600-194037200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:194032200-194043000	Weak transcription	Right Atrium	heart
3	chr1:194032400-194037600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:194033800-194040400	Weak transcription	HUVEC	blood vessel

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