Variant report

Variant	nsv524641
Chromosome Location	chr6:150625572-150644030
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150620693..150625949-chr6:150627495..150632317,8	K562	blood:
2	chr6:150594862..150596896-chr6:150629202..150631645,2	K562	blood:
3	chr6:150637450..150641855-chr6:150642003..150645154,6	K562	blood:
4	chr6:150638163..150639671-chr6:150643884..150646332,2	MCF-7	breast:
5	chr6:150607126..150608753-chr6:150627355..150629999,2	K562	blood:
6	chr6:150627066..150629828-chr6:150636528..150638058,2	K562	blood:
7	chr6:150633237..150635111-chr6:150636965..150639804,2	MCF-7	breast:
8	chr6:150601201..150603369-chr6:150639907..150641803,2	MCF-7	breast:
9	chr6:150638163..150639671-chr6:150643884..150646332,2	MCF-7	breast:
10	chr6:150637450..150641855-chr6:150642003..150645154,6	K562	blood:
11	chr6:150620693..150625949-chr6:150627495..150632317,8	K562	blood:
12	chr6:150627066..150629828-chr6:150636528..150638058,2	K562	blood:
13	chr6:150632599..150634459-chr6:150636479..150638879,2	K562	blood:
14	chr6:150630670..150634449-chr6:150639443..150643580,5	K562	blood:
15	chr6:150586437..150588677-chr6:150642579..150644863,2	K562	blood:
16	chr6:150624607..150626485-chr6:150639529..150642176,2	K562	blood:
17	chr6:150642390..150644728-chr6:150645013..150646951,2	K562	blood:
18	chr6:150630670..150634449-chr6:150639443..150643580,5	K562	blood:
19	chr6:150642041..150644950-chr6:150645013..150647968,3	K562	blood:
20	chr6:150514785..150516493-chr6:150643803..150645499,2	K562	blood:
21	chr6:150633237..150635111-chr6:150636965..150639804,2	MCF-7	breast:
22	chr6:150624607..150626485-chr6:150639529..150642176,2	K562	blood:
23	chr6:150632599..150634459-chr6:150636479..150638879,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IYD-3	chr6:150632565-150632799	l_3297_chr6:150632564-150635742_testes
2	lnc-PPP1R14C-1	chr6:150626922-150627165	NONHSAT115535
3	lnc-IYD-3	chr6:150635552-150635742	l_3297_chr6:150632564-150635742_testes

No data

Variant related genes	Relation type
ENSG00000201628	chromatin interactions

Extended variants
information (count: 751 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:751 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6904151	chr6:150625572-150625573	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs368652554	chr6:150625705-150625706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs189066390	chr6:150625750-150625751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs538572100	chr6:150625837-150625838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs558400490	chr6:150625848-150625849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs191995350	chr6:150625862-150625863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs534775165	chr6:150625915-150625916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs553976736	chr6:150625917-150625918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs115010496	chr6:150625928-150625929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs184770015	chr6:150625929-150625930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs116547237	chr6:150625938-150625939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs576484296	chr6:150625958-150625959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs562534968	chr6:150626009-150626010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs189185083	chr6:150626117-150626118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs545740088	chr6:150626145-150626146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs144977089	chr6:150626155-150626156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs371546518	chr6:150626183-150626184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs148664036	chr6:150626207-150626208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs9480192	chr6:150626291-150626292	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs73614071	chr6:150626337-150626338	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs529769709	chr6:150626399-150626400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs549440571	chr6:150626405-150626406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs372548817	chr6:150626406-150626407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs180925936	chr6:150626491-150626492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs538210413	chr6:150626546-150626547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs185755840	chr6:150626552-150626553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs565918247	chr6:150626578-150626579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs9397262	chr6:150626590-150626591	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs542325584	chr6:150626624-150626625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs531457870	chr6:150626629-150626630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs35802368	chr6:150626630-150626631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs397888496	chr6:150626646-150626647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs201837275	chr6:150626647-150626648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs568146264	chr6:150626688-150626689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs536773068	chr6:150626755-150626756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs556667189	chr6:150626775-150626776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs189453570	chr6:150626791-150626792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs377169624	chr6:150626854-150626855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs397886693	chr6:150626855-150626856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs181442822	chr6:150626908-150626909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs558991688	chr6:150626957-150626958	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs185650613	chr6:150626968-150626969	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs541354379	chr6:150627002-150627003	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs561556036	chr6:150627026-150627027	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs190756523	chr6:150627066-150627067	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs375265762	chr6:150627131-150627132	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs62441184	chr6:150627137-150627138	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs73779948	chr6:150627168-150627169	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs552196687	chr6:150627172-150627173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs77916749	chr6:150627182-150627183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
Cancer	17160897	CNVD
Breast cancer	17417639	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20556506	CNVD
Hirschsprung''s Disease	21712996	CNVD
Testicular germ cell tumor	18059402	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Developmental delay	21147756	CNVD

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150619600-150641200	Weak transcription	Right Atrium	heart
2	chr6:150621600-150635400	Weak transcription	Fetal Heart	heart
3	chr6:150624200-150628600	Weak transcription	K562	blood
4	chr6:150624400-150634400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:150628600-150629200	Enhancers	K562	blood
6	chr6:150628800-150629000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr6:150628800-150629000	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr6:150628800-150636000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:150629000-150629400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:150629200-150633600	Weak transcription	K562	blood
11	chr6:150630000-150633800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:150630400-150630600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
13	chr6:150630400-150631800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:150630400-150634000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr6:150630400-150635000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:150631600-150632000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:150633600-150634200	Enhancers	K562	blood
18	chr6:150634000-150634400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:150634000-150635800	Enhancers	Fetal Lung	lung
20	chr6:150634200-150634400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:150634400-150634600	Enhancers	Fetal Intestine Large	intestine
22	chr6:150634400-150634600	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr6:150634400-150634600	Enhancers	Psoas Muscle	Psoas
24	chr6:150634400-150635000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr6:150634400-150635400	Enhancers	Fetal Stomach	stomach
26	chr6:150634400-150635600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:150634600-150636000	Enhancers	Fetal Muscle Leg	muscle
28	chr6:150634600-150639400	Weak transcription	Psoas Muscle	Psoas
29	chr6:150635000-150635400	Enhancers	Fetal Intestine Large	intestine
30	chr6:150635400-150635600	Enhancers	Fetal Heart	heart
31	chr6:150635600-150635800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:150635600-150635800	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr6:150635600-150635800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:150635600-150635800	Enhancers	Left Ventricle	heart
35	chr6:150635600-150636000	Weak transcription	Fetal Heart	heart
36	chr6:150635600-150636400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr6:150635600-150636400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr6:150635800-150641200	Weak transcription	Fetal Lung	lung
39	chr6:150636000-150636200	Enhancers	Fetal Heart	heart
40	chr6:150636200-150636400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:150636200-150636600	Enhancers	Fetal Muscle Trunk	muscle
42	chr6:150636200-150637600	Weak transcription	Fetal Heart	heart
43	chr6:150636400-150636600	Enhancers	Right Ventricle	heart
44	chr6:150636400-150639000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:150636400-150640600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:150636400-150640800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:150636600-150641000	Weak transcription	Right Ventricle	heart
48	chr6:150637600-150638200	Enhancers	Fetal Heart	heart
49	chr6:150637600-150638400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
50	chr6:150638000-150638400	Enhancers	Left Ventricle	heart

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