Variant report

Variant	nsv527616
Chromosome Location	chr9:15574853-15579744
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 279 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:279 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4740615	chr9:15574853-15574854	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs143891094	chr9:15574870-15574871	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs113201609	chr9:15574872-15574873	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs562001375	chr9:15574897-15574898	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs181740182	chr9:15574934-15574935	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs7021778	chr9:15574937-15574938	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs148608350	chr9:15574944-15574945	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs371854389	chr9:15574965-15574966	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs539903435	chr9:15574979-15574980	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs528159093	chr9:15575016-15575017	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs535755179	chr9:15575041-15575042	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375236060	chr9:15575053-15575054	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs551401933	chr9:15575065-15575066	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs566997278	chr9:15575154-15575155	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs553148100	chr9:15575180-15575181	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs57272096	chr9:15575181-15575182	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201843489	chr9:15575194-15575195	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs141227514	chr9:15575213-15575214	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs555515334	chr9:15575220-15575221	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs200147182	chr9:15575222-15575223	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs567946107	chr9:15575227-15575228	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs538159648	chr9:15575249-15575250	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs150731967	chr9:15575253-15575254	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs140928793	chr9:15575272-15575273	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs186093571	chr9:15575278-15575279	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs557410712	chr9:15575292-15575293	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs572636803	chr9:15575307-15575308	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs375083911	chr9:15575311-15575312	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs540216137	chr9:15575314-15575315	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs537034855	chr9:15575315-15575316	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs529143784	chr9:15575319-15575320	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs544190022	chr9:15575355-15575356	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs556852672	chr9:15575362-15575363	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs562640640	chr9:15575386-15575387	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs144786877	chr9:15575389-15575390	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190257800	chr9:15575391-15575392	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs182531187	chr9:15575398-15575399	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs527826652	chr9:15575410-15575411	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs549311252	chr9:15575450-15575451	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs554070610	chr9:15575462-15575463	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs538496116	chr9:15575468-15575469	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs115964213	chr9:15575509-15575510	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186021486	chr9:15575518-15575519	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs201871842	chr9:15575536-15575537	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs373346058	chr9:15575539-15575540	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs190927921	chr9:15575641-15575642	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs538833909	chr9:15575651-15575652	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs147962480	chr9:15575656-15575657	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs572601545	chr9:15575685-15575686	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs539957951	chr9:15575691-15575692	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15553800-15576200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:15553800-15580600	Weak transcription	Ovary	ovary
3	chr9:15553800-15592600	Weak transcription	Left Ventricle	heart
4	chr9:15554000-15590200	Weak transcription	Fetal Stomach	stomach
5	chr9:15554400-15579400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:15554600-15580800	Weak transcription	Brain Anterior Caudate	brain
7	chr9:15562200-15588200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:15562400-15583800	Weak transcription	Thymus	Thymus
9	chr9:15565000-15578800	Weak transcription	Fetal Thymus	thymus
10	chr9:15572400-15580800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:15573200-15576600	Weak transcription	Fetal Lung	lung
12	chr9:15574600-15580000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:15574800-15579400	Strong transcription	Primary hematopoietic stem cells	blood
14	chr9:15576200-15576800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:15576200-15577000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:15576200-15577200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:15576600-15577000	Enhancers	Fetal Lung	lung
18	chr9:15576800-15578600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:15577000-15578800	Weak transcription	Fetal Lung	lung
20	chr9:15578400-15579200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:15578600-15578800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:15578600-15580000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:15578800-15579000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr9:15578800-15579200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:15578800-15579200	Enhancers	Fetal Lung	lung
26	chr9:15578800-15580400	Strong transcription	Fetal Thymus	thymus
27	chr9:15579000-15579200	Enhancers	Fetal Kidney	kidney
28	chr9:15579400-15590200	Weak transcription	Primary hematopoietic stem cells	blood

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