Variant report

Variant	nsv52822
Chromosome Location	chr12:11559241-11568296
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRB1-1	chr12:11559632-11559826	ENSG00000255790.1

Extended variants
information (count: 513 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:513 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs386760387	chr12:11559241-11559242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs2416675	chr12:11559243-11559244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376054140	chr12:11559250-11559251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs191917486	chr12:11559259-11559260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs538679469	chr12:11559263-11559264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs557087644	chr12:11559275-11559276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575437464	chr12:11559319-11559320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs542789209	chr12:11559329-11559330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs182985248	chr12:11559347-11559348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs573064807	chr12:11559407-11559408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs368572908	chr12:11559432-11559433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs540159429	chr12:11559464-11559465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs565242393	chr12:11559508-11559509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs185857345	chr12:11559575-11559576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs190266762	chr12:11559599-11559600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs370561838	chr12:11559603-11559604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs562627379	chr12:11559605-11559606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs530149815	chr12:11559625-11559626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs548735711	chr12:11559644-11559645	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs115279422	chr12:11559672-11559673	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs151264232	chr12:11559679-11559680	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs116675098	chr12:11559681-11559682	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs376493145	chr12:11559716-11559717	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs140507161	chr12:11559741-11559742	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs538614404	chr12:11559750-11559751	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs557028177	chr12:11559754-11559755	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs150133453	chr12:11559845-11559846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs561103254	chr12:11559858-11559859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535986291	chr12:11559863-11559864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs554701760	chr12:11559866-11559867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs138806465	chr12:11559868-11559869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs367934314	chr12:11559876-11559877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs182558728	chr12:11559921-11559922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571631139	chr12:11559936-11559937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs558410458	chr12:11559958-11559959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs574693384	chr12:11560007-11560008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs11054280	chr12:11560012-11560013	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs544166444	chr12:11560014-11560015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs142826956	chr12:11560051-11560052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs541969361	chr12:11560052-11560053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs147009079	chr12:11560081-11560082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs527878904	chr12:11560108-11560109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs187794589	chr12:11560112-11560113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192757222	chr12:11560195-11560196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs532057312	chr12:11560226-11560227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs138206224	chr12:11560235-11560236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs568874083	chr12:11560240-11560241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs536304178	chr12:11560250-11560251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200908259	chr12:11560266-11560267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs182423502	chr12:11560267-11560268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Acute lymphoblastic leukemia	17690704	CNVD
Medulloblastoma	16968546	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Hepatocellular carcinoma	16750200	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Breast cancer	22032731	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	21965145	CNVD
Acute myeloid leukemia	16864856	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Disorders of sex development	21048976	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Prostate cancer	19156837	CNVD
Emphysema	19352772	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Malignant germ cell tumour	17285132	CNVD
Melanoma	18172304	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	21264507	CNVD
Cancer	16751803	CNVD
Testicular cancer	18059402	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Seminomas	18059402	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Testicular germ cell tumor	18059402	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21858162	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21611746	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Squamous cell cancer	19607727	CNVD
Prostate cancer	16573809	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute myeloid leukemia	17268525	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Ovarian cancer	21720365	CNVD
Acute myeloid leukemia	17237825	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11550800-11568400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:11560600-11561800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:11561000-11561600	Enhancers	HMEC	breast
4	chr12:11561000-11561800	Enhancers	NHEK	skin
5	chr12:11561800-11563000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links