Variant report
Variant | nsv529148 |
---|---|
Chromosome Location | chr19:43242595-43530001 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3960)
- CpG islands (count:2137)
- Chromatin interactive region (count:8)
- LncRNA region (count:40)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ATF3 | chr19:43336336-43336928 | A549 | lung: | n/a | n/a |
2 | ATF3 | chr19:43335307-43336092 | A549 | lung: | n/a | n/a |
3 | ATF3 | chr19:43335349-43336094 | A549 | lung: | n/a | n/a |
4 | ATF3 | chr19:43355412-43355889 | A549 | lung: | n/a | n/a |
5 | ATF3 | chr19:43336349-43336838 | A549 | lung: | n/a | n/a |
6 | ATF3 | chr19:43355048-43355947 | A549 | lung: | n/a | n/a |
7 | BATF | chr19:43271446-43271728 | GM12878 | blood: | n/a | n/a |
8 | BATF | chr19:43442962-43443231 | GM12878 | blood: | n/a | n/a |
9 | BATF | chr19:43246213-43246502 | GM12878 | blood: | n/a | n/a |
10 | BATF | chr19:43361555-43361754 | GM12878 | blood: | n/a | n/a |
11 | BATF | chr19:43302238-43302533 | GM12878 | blood: | n/a | chr19:43302344-43302355 |
12 | BCL3 | chr19:43336972-43337663 | A549 | lung: | n/a | n/a |
13 | BCL3 | chr19:43402518-43403428 | A549 | lung: | n/a | n/a |
14 | BCL3 | chr19:43354910-43356058 | A549 | lung: | n/a | n/a |
15 | BCL3 | chr19:43297507-43298116 | A549 | lung: | n/a | n/a |
16 | BCL3 | chr19:43323095-43323355 | GM12878 | blood: | n/a | n/a |
17 | BCL3 | chr19:43336292-43336877 | A549 | lung: | n/a | n/a |
18 | BCL3 | chr19:43336159-43337656 | A549 | lung: | n/a | chr19:43336227-43336234 |
19 | BCL3 | chr19:43335292-43335990 | A549 | lung: | n/a | chr19:43335602-43335611 chr19:43335603-43335612 |
20 | BCL3 | chr19:43335242-43336126 | A549 | lung: | n/a | chr19:43335602-43335611 chr19:43335603-43335612 |
21 | BCL3 | chr19:43354946-43356043 | A549 | lung: | n/a | n/a |
22 | BHLHE40 | chr19:43427453-43427512 | GM12878 | blood: | n/a | n/a |
23 | BHLHE40 | chr19:43385480-43385517 | K562 | blood: | n/a | n/a |
24 | BHLHE40 | chr19:43355572-43355890 | A549 | lung: | n/a | n/a |
25 | BRCA1 | chr19:43297623-43297950 | Hela-S3 | cervix: | n/a | n/a |
26 | BRCA1 | chr19:43525934-43526309 | Hela-S3 | cervix: | n/a | n/a |
27 | BRCA1 | chr19:43436723-43436914 | Hela-S3 | cervix: | n/a | n/a |
28 | BRCA1 | chr19:43265411-43265577 | Hela-S3 | cervix: | n/a | n/a |
29 | BRCA1 | chr19:43355288-43355847 | Hela-S3 | cervix: | n/a | n/a |
30 | CBX3 | chr19:43385505-43385738 | K562 | blood: | n/a | n/a |
31 | CBX3 | chr19:43385431-43385838 | K562 | blood: | n/a | n/a |
32 | CEBPB | chr19:43496454-43496723 | HepG2 | liver: | n/a | n/a |
33 | CEBPB | chr19:43337171-43337381 | A549 | lung: | n/a | n/a |
34 | CEBPB | chr19:43328208-43328426 | Hela-S3 | cervix: | n/a | chr19:43328257-43328268 |
35 | CEBPB | chr19:43510079-43510205 | HepG2 | liver: | n/a | chr19:43510191-43510202 |
36 | CEBPB | chr19:43326599-43326799 | A549 | lung: | n/a | n/a |
37 | CEBPB | chr19:43337158-43337425 | Hela-S3 | cervix: | n/a | n/a |
38 | CEBPB | chr19:43339173-43339354 | Hela-S3 | cervix: | n/a | n/a |
39 | CEBPB | chr19:43329196-43329407 | HepG2 | liver: | n/a | chr19:43329341-43329352 |
40 | CEBPB | chr19:43355051-43355897 | A549 | lung: | n/a | n/a |
41 | CEBPB | chr19:43496426-43496699 | A549 | lung: | n/a | n/a |
42 | CEBPB | chr19:43265127-43265827 | Hela-S3 | cervix: | n/a | n/a |
43 | CEBPB | chr19:43297755-43297993 | A549 | lung: | n/a | n/a |
44 | CEBPB | chr19:43482706-43482918 | Hela-S3 | cervix: | n/a | n/a |
45 | CEBPB | chr19:43436540-43437331 | IMR90 | lung: | n/a | n/a |
46 | CEBPB | chr19:43336500-43336748 | A549 | lung: | n/a | n/a |
47 | CEBPB | chr19:43401993-43402212 | Hela-S3 | cervix: | n/a | n/a |
48 | CEBPB | chr19:43328228-43328417 | HepG2 | liver: | n/a | chr19:43328257-43328268 |
49 | CEBPB | chr19:43335392-43336031 | A549 | lung: | n/a | n/a |
50 | CEBPB | chr19:43517258-43517378 | A549 | lung: | n/a | chr19:43517348-43517359 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43423119-43423169 | SAEC | small airway: | n/a |
2 | chr19:43244635-43244685 | CMK | blood: | n/a |
3 | chr19:43423119-43423169 | SAEC | small airway: | n/a |
4 | chr19:43244635-43244685 | CMK | blood: | n/a |
5 | chr19:43359870-43359920 | GM12891 | blood: | n/a |
6 | chr19:43514144-43514194 | GM12878 | blood: | n/a |
7 | chr19:43359870-43359920 | SAEC | small airway: | n/a |
8 | chr19:43271058-43271108 | U87 | brain: | n/a |
9 | chr19:43383405-43383455 | GM12878 | blood: | n/a |
10 | chr19:43383405-43383455 | SAEC | small airway: | n/a |
11 | chr19:43271112-43271162 | HRPEpiC | eye: | n/a |
12 | chr19:43423265-43423315 | SKMC | muscle: | n/a |
13 | chr19:43423265-43423315 | HIPEpiC | eye: | n/a |
14 | chr19:43441294-43441344 | HPAEpiC | pulmonary alveolar: | n/a |
15 | chr19:43244635-43244685 | IMR90 | lung: | fetal |
16 | chr19:43442693-43442743 | HRPEpiC | eye: | n/a |
17 | chr19:43257346-43257396 | SAEC | small airway: | n/a |
18 | chr19:43244635-43244685 | BE2_C | brain: | n/a |
19 | chr19:43383986-43384036 | GM19239 | blood: | n/a |
20 | chr19:43441294-43441344 | HRPEpiC | eye: | n/a |
21 | chr19:43360755-43360805 | PFSK-1 | brain: | n/a |
22 | chr19:43423115-43423165 | A549 | lung: | n/a |
23 | chr19:43441294-43441344 | PFSK-1 | brain: | n/a |
24 | chr19:43383986-43384036 | HIPEpiC | eye: | n/a |
25 | chr19:43421584-43421634 | Hela-S3 | cervix: | n/a |
26 | chr19:43244680-43244730 | AG04449 | skin: | fetal |
27 | chr19:43423115-43423165 | SKMC | muscle: | n/a |
28 | chr19:43257346-43257396 | HMEC | breast: | n/a |
29 | chr19:43245921-43245971 | H1-hESC | embryonic stem cell: | embryo |
30 | chr19:43265778-43265828 | H1-hESC | embryonic stem cell: | embryo |
31 | chr19:43244680-43244730 | ProgFib | skin: | n/a |
32 | chr19:43385047-43385097 | SKMC | muscle: | n/a |
33 | chr19:43271112-43271162 | HMEC | breast: | n/a |
34 | chr19:43271112-43271162 | NH-A | brain: | n/a |
35 | chr19:43269832-43269882 | ProgFib | skin: | n/a |
36 | chr19:43355659-43355709 | A549 | lung: | n/a |
37 | chr19:43265778-43265828 | Hela-S3 | cervix: | n/a |
38 | chr19:43269877-43269927 | SK-N-SH | brain: | n/a |
39 | chr19:43442809-43442859 | AG10803 | skin: | n/a |
40 | chr19:43423265-43423315 | HEK293 | kidney: | embryo |
41 | chr19:43271004-43271054 | GM19239 | blood: | n/a |
42 | chr19:43360755-43360805 | HL-60 | blood: | n/a |
43 | chr19:43442804-43442854 | HL-60 | blood: | n/a |
44 | chr19:43383405-43383455 | SKMC | muscle: | n/a |
45 | chr19:43442809-43442859 | HRE | kidney: | n/a |
46 | chr19:43361218-43361268 | NHBE | bronchial: | n/a |
47 | chr19:43385047-43385097 | AG10803 | skin: | n/a |
48 | chr19:43271112-43271162 | K562 | blood: | n/a |
49 | chr19:43442693-43442743 | Caco-2 | colon: | n/a |
50 | chr19:43421584-43421634 | SK-N-SH | brain: | n/a |
(count:8 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43139154..43139986-chr19:43246322..43246897,2 | MCF-7 | breast: | |
2 | chr19:43523469..43524084-chr19:43531918..43532440,2 | MCF-7 | breast: | |
3 | chr19:43265768..43266290-chr19:43769932..43770473,2 | MCF-7 | breast: | |
4 | chr19:43197647..43198196-chr19:43280850..43281744,2 | MCF-7 | breast: | |
5 | chr19:43197619..43198590-chr19:43246174..43246898,3 | MCF-7 | breast: | |
6 | chr19:43297087..43297875-chr19:43423005..43423976,2 | MCF-7 | breast: | |
7 | chr19:43197633..43198568-chr19:43280847..43281639,2 | K562 | blood: | |
8 | chr19:43197626..43198528-chr19:43245881..43246809,2 | MCF-7 | breast: |
(count:40 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PSG6-1 | chr19:43429925-43430179 | NR_073194 |
2 | lnc-PSG1-1 | chr19:43359708-43359870 | NONHSAT066571 |
3 | lnc-PSG1-1 | chr19:43358101-43358466 | NONHSAT066571 |
4 | lnc-PSG6-1 | chr19:43430590-43430868 | NR_073194 |
5 | lnc-PSG6-1 | chr19:43440309-43440647 | NONHSAT066574 |
6 | lnc-PSG1-1 | chr19:43343708-43343916 | NONHSAT066571 |
7 | lnc-PSG6-2 | chr19:43453655-43453909 | NONHSAT066575 |
8 | lnc-PSG1-1 | chr19:43343520-43343530 | NONHSAT146988 |
9 | lnc-PSG1-1 | chr19:43343708-43343916 | NONHSAT146988 |
10 | lnc-PSG6-2 | chr19:43454299-43454539 | NONHSAT066575 |
11 | lnc-PSG1-1 | chr19:43349168-43349446 | NONHSAT146988 |
12 | lnc-PSG1-1 | chr19:43349168-43349446 | NONHSAT066571 |
13 | lnc-PSG8-1 | chr19:43285358-43285449 | NONHSAT066567 |
14 | lnc-PSG6-1 | chr19:43428286-43428976 | NONHSAT066573 |
15 | lnc-PSG1-1 | chr19:43348511-43348765 | NONHSAT066571 |
16 | lnc-PSG6-1 | chr19:43429925-43431729 | NONHSAT066573 |
17 | lnc-PSG2-5 | chr19:43514422-43514579 | NONHSAT066577 |
18 | lnc-PSG2-4 | chr19:43521383-43521753 | NONHSAT066578 |
19 | lnc-PSG6-1 | chr19:43428284-43428976 | NR_073194 |
20 | lnc-PSG6-1 | chr19:43439556-43439921 | NR_073194 |
21 | lnc-PSG1-1 | chr19:43359708-43359870 | NONHSAT146988 |
22 | lnc-PSG6-1 | chr19:43433594-43433872 | NR_073194 |
23 | lnc-PSG1-1 | chr19:43358101-43358466 | NONHSAT146988 |
24 | lnc-PSG1-1 | chr19:43348511-43348765 | NONHSAT146988 |
25 | lnc-PSG1-1 | chr19:43341149-43341534 | NONHSAT066571 |
26 | lnc-PSG8-1 | chr19:43290505-43290747 | NONHSAT066567 |
27 | lnc-PSG8-1 | chr19:43289879-43290117 | NONHSAT066567 |
28 | lnc-PSG2-4 | chr19:43522922-43523199 | NONHSAT066578 |
29 | lnc-PSG6-3 | chr19:43372908-43374797 | NONHSAT066572 |
30 | lnc-PSG6-1 | chr19:43441165-43441330 | NONHSAT066574 |
31 | lnc-PSG2-5 | chr19:43514110-43514858 | NONHSAT066576 |
32 | lnc-PSG6-1 | chr19:43441165-43441330 | NR_073194 |
33 | lnc-PSG6-3 | chr19:43370618-43371302 | NONHSAT066572 |
34 | lnc-PSG1-1 | chr19:43343447-43343530 | NONHSAT066571 |
35 | lnc-PSG2-5 | chr19:43511982-43512194 | NONHSAT066576 |
36 | lnc-PSG6-3 | chr19:43372253-43372507 | NONHSAT066572 |
37 | lnc-PSG3-1 | chr19:43256843-43257528 | NONHSAT066566 |
38 | lnc-PSG2-5 | chr19:43519268-43519426 | NONHSAT066577 |
39 | lnc-PSG3-1 | chr19:43258485-43260276 | NONHSAT066566 |
40 | lnc-PSG1-1 | chr19:43341149-43341602 | NONHSAT066570 |
No data |
No data |
Variant related genes | Relation type |
---|---|
CEACAMP7 | TF binding region |
PSG8 | TF binding region |
PSG1 | TF binding region |
PSG7 | TF binding region |
PSG11 | TF binding region |
ENSG00000225877 | TF binding region |
PSG6 | TF binding region |
CEACAMP6 | TF binding region |
PSG3 | TF binding region |
PSG10P | TF binding region |
CEACAMP7 | CpG island |
PSG8 | CpG island |
PSG1 | CpG island |
PSG7 | CpG island |
PSG11 | CpG island |
ENSG00000225877 | CpG island |
PSG6 | CpG island |
CEACAMP6 | CpG island |
PSG3 | CpG island |
PSG10P | CpG island |
ENSG00000170848 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs367911821 | chr19:43242608-43242609 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
2 | rs143027733 | chr19:43242613-43242614 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
3 | rs372147606 | chr19:43242617-43242618 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
4 | rs573633011 | chr19:43242632-43242633 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
5 | rs568061082 | chr19:43242633-43242634 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
6 | rs535972026 | chr19:43242655-43242656 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
7 | rs541384063 | chr19:43242669-43242670 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
8 | rs180769545 | chr19:43242692-43242693 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
9 | rs576350953 | chr19:43242705-43242706 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
10 | rs545300569 | chr19:43242720-43242721 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
11 | rs374787166 | chr19:43242726-43242727 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
12 | rs572385232 | chr19:43242727-43242728 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
13 | rs187414461 | chr19:43242737-43242738 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
14 | rs192258437 | chr19:43242739-43242740 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
15 | rs112563613 | chr19:43242754-43242755 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
16 | rs550054535 | chr19:43242760-43242761 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
17 | rs563887933 | chr19:43242769-43242770 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
18 | rs183674644 | chr19:43242773-43242774 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
19 | rs552370227 | chr19:43242784-43242785 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
20 | rs566006223 | chr19:43242793-43242794 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
21 | rs528760474 | chr19:43242796-43242797 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
22 | rs547327019 | chr19:43242797-43242798 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
23 | rs567188908 | chr19:43242798-43242799 | Enhancers Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
24 | rs372282926 | chr19:43242801-43242802 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
25 | rs140145386 | chr19:43242804-43242805 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
26 | rs569848922 | chr19:43242823-43242824 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
27 | rs375538288 | chr19:43242837-43242838 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
28 | rs199508988 | chr19:43242841-43242842 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
29 | rs186984405 | chr19:43242843-43242844 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
30 | rs374031019 | chr19:43242862-43242863 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
31 | rs376103990 | chr19:43242871-43242872 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
32 | rs146032744 | chr19:43242875-43242876 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
33 | rs541007597 | chr19:43242881-43242882 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
34 | rs370569350 | chr19:43242890-43242891 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
35 | rs554946037 | chr19:43242900-43242901 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
36 | rs141514739 | chr19:43242918-43242919 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
37 | rs148268470 | chr19:43242923-43242924 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
38 | rs199594960 | chr19:43242927-43242928 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
39 | rs563409953 | chr19:43242937-43242938 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
40 | rs150289595 | chr19:43242950-43242951 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
41 | rs200117711 | chr19:43242957-43242958 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
42 | rs150861512 | chr19:43242961-43242962 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
43 | rs373964308 | chr19:43242965-43242966 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
44 | rs149473391 | chr19:43242966-43242967 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
45 | rs200076373 | chr19:43242968-43242969 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
46 | rs559528997 | chr19:43243004-43243005 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
47 | rs528748084 | chr19:43243005-43243006 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
48 | rs267605518 | chr19:43243013-43243014 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
49 | rs145970990 | chr19:43243014-43243015 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
50 | rs548645436 | chr19:43243020-43243021 | Active TSS Transcr. at gene 5' and 3' | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Cancer | 20164919 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Prostate cancer | 18632612 | CNVD |
Autism | 22495311 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Congenital nephrotic syndrome | 18421352 | CNVD |
Astrocytoma | 17934521 | CNVD |
Leukemia | 17361228 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Breast cancer | 21858162 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
renal disease | 20603712 | CNVD |
Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Breast cancer | 21364760 | CNVD |
Invasive pancreatic ductal carcinoma | 18765526 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Chordoma | 18071362 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Bladder cancer | 21909424 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Gastric cancer | 18160780 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Basal cell lymphoma | 19029149 | CNVD |
Breast cancer | 20409316 | CNVD |
Diffuse large b-cell lymphoma | 19029149 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Lung cancer | 18438408 | CNVD |
Ovarian clear cell carcinoma | 19293255 | CNVD |
Astrocytoma | 22246337 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 21509527 | CNVD |
Cancer | 20164920 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Ependymoma | 20639864 | CNVD |
Autism | 19492091 | CNVD |
Ovarian cancer | 20800559 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 16272173 | CNVD |
Spondylocostal dysostosis | 21085971 | CNVD |
Nicotine metabolism | 21956041 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Breast cancer | 17133270 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Melanoma | 20877625 | CNVD |
Ovarian cancer | 21240255 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:43239000-43242800 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
2 | chr19:43239400-43242800 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
3 | chr19:43239800-43242600 | Enhancers | NHEK | skin |
4 | chr19:43241600-43243400 | Transcr. at gene 5' and 3' | Placenta | Placenta |
5 | chr19:43242800-43243200 | Active TSS | Brain Substantia Nigra | brain |
6 | chr19:43243400-43244600 | Active TSS | Placenta | Placenta |
7 | chr19:43244400-43244600 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
8 | chr19:43244600-43245000 | Weak transcription | Placenta | Placenta |
9 | chr19:43244600-43245600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
10 | chr19:43245000-43246400 | Enhancers | Placenta | Placenta |
11 | chr19:43245400-43245600 | Bivalent Enhancer | Foreskin Fibroblast Primary Cells skin01 | Skin |
12 | chr19:43245600-43246400 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
13 | chr19:43252800-43253200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
14 | chr19:43253000-43253200 | Weak transcription | Placenta | Placenta |
15 | chr19:43253200-43254000 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
16 | chr19:43253200-43254000 | Enhancers | Placenta | Placenta |
17 | chr19:43254000-43261800 | Weak transcription | Placenta | Placenta |
18 | chr19:43261800-43262600 | Strong transcription | Placenta | Placenta |
19 | chr19:43262600-43263200 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
20 | chr19:43262600-43264200 | Weak transcription | Placenta | Placenta |
21 | chr19:43263200-43264600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
22 | chr19:43263400-43263600 | Enhancers | NHLF | lung |
23 | chr19:43263400-43267600 | Enhancers | NHDF-Ad | bronchial |
24 | chr19:43263600-43264400 | Weak transcription | NHLF | lung |
25 | chr19:43263600-43267600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
26 | chr19:43264200-43264800 | Enhancers | Placenta | Placenta |
27 | chr19:43264200-43265000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
28 | chr19:43264200-43267200 | Enhancers | Osteobl | bone |
29 | chr19:43264400-43265400 | Enhancers | Foreskin Fibroblast Primary Cells skin02 | Skin |
30 | chr19:43264400-43266200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
31 | chr19:43264400-43267600 | Enhancers | Muscle Satellite Cultured Cells | -- |
32 | chr19:43264400-43267600 | Enhancers | NHLF | lung |
33 | chr19:43264600-43268000 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
34 | chr19:43264800-43265200 | Flanking Active TSS | Placenta | Placenta |
35 | chr19:43264800-43265400 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
36 | chr19:43264800-43265400 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
37 | chr19:43264800-43265800 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
38 | chr19:43264800-43265800 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
39 | chr19:43264800-43265800 | Enhancers | HSMM | muscle |
40 | chr19:43264800-43267400 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
41 | chr19:43264800-43267600 | Enhancers | HMEC | breast |
42 | chr19:43264800-43267600 | Enhancers | NH-A | brain |
43 | chr19:43265000-43265800 | Enhancers | A549 | lung |
44 | chr19:43265000-43266000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
45 | chr19:43265000-43266400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
46 | chr19:43265000-43267400 | Enhancers | NHEK | skin |
47 | chr19:43265000-43267600 | Enhancers | Hela-S3 | cervix |
48 | chr19:43265200-43265400 | Enhancers | Esophagus | oesophagus |
49 | chr19:43265200-43265400 | Active TSS | Placenta | Placenta |
50 | chr19:43265200-43265400 | Enhancers | Pancreas | Pancrea |