Variant report

Variant	nsv534202
Chromosome Location	chr19:52272356-52627403
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6032)
CpG islands
(count:7695)
Chromatin interactive
region (count:274)
LncRNA
region (count:104)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

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No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:52552024-52552805	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:52531399-52531960	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:52303443-52304384	K562	blood:	n/a	n/a
4	ARID3A	chr19:52310240-52311002	K562	blood:	n/a	n/a
5	ARID3A	chr19:52555017-52555116	HepG2	liver:	n/a	n/a
6	ARID3A	chr19:52281095-52281512	K562	blood:	n/a	n/a
7	ARID3A	chr19:52306606-52307609	K562	blood:	n/a	n/a
8	ARID3A	chr19:52313645-52313812	HepG2	liver:	n/a	n/a
9	ARID3A	chr19:52511381-52511632	HepG2	liver:	n/a	n/a
10	ARID3A	chr19:52531625-52531875	K562	blood:	n/a	n/a
11	ARID3A	chr19:52308170-52308456	HepG2	liver:	n/a	n/a
12	ARID3A	chr19:52286712-52286989	K562	blood:	n/a	n/a
13	ARID3A	chr19:52598763-52599031	HepG2	liver:	n/a	n/a
14	ARID3A	chr19:52408187-52408572	K562	blood:	n/a	n/a
15	ARID3A	chr19:52311894-52312194	K562	blood:	n/a	n/a
16	ARID3A	chr19:52307809-52308459	K562	blood:	n/a	n/a
17	ARID3A	chr19:52603068-52603334	HepG2	liver:	n/a	n/a
18	ARID3A	chr19:52407414-52407541	HepG2	liver:	n/a	n/a
19	ARID3A	chr19:52407793-52408814	HepG2	liver:	n/a	n/a
20	ARID3A	chr19:52313557-52313692	K562	blood:	n/a	n/a
21	ARID3A	chr19:52274862-52275001	K562	blood:	n/a	n/a
22	ARID3A	chr19:52551838-52552062	K562	blood:	n/a	n/a
23	ARID3A	chr19:52299117-52300997	K562	blood:	n/a	n/a
24	ARID3A	chr19:52288166-52289145	K562	blood:	n/a	n/a
25	ARID3A	chr19:52302554-52302890	K562	blood:	n/a	n/a
26	ARID3A	chr19:52298176-52298372	K562	blood:	n/a	n/a
27	ARID3A	chr19:52333617-52333822	K562	blood:	n/a	n/a
28	ARID3A	chr19:52489958-52490423	HepG2	liver:	n/a	n/a
29	ATF1	chr19:52313567-52313801	K562	blood:	n/a	n/a
30	ATF1	chr19:52290370-52290609	K562	blood:	n/a	n/a
31	ATF1	chr19:52480697-52480890	K562	blood:	n/a	n/a
32	ATF1	chr19:52286699-52286989	K562	blood:	n/a	n/a
33	ATF1	chr19:52299358-52299816	K562	blood:	n/a	n/a
34	ATF1	chr19:52282997-52283290	K562	blood:	n/a	n/a
35	ATF1	chr19:52594171-52594249	K562	blood:	n/a	n/a
36	ATF1	chr19:52430091-52430806	K562	blood:	n/a	n/a
37	ATF1	chr19:52463795-52464169	K562	blood:	n/a	n/a
38	ATF1	chr19:52288144-52288776	K562	blood:	n/a	n/a
39	ATF1	chr19:52531294-52532287	K562	blood:	n/a	n/a
40	ATF1	chr19:52303528-52304254	K562	blood:	n/a	n/a
41	ATF1	chr19:52551777-52552810	K562	blood:	n/a	n/a
42	ATF1	chr19:52302531-52302910	K562	blood:	n/a	n/a
43	ATF1	chr19:52325702-52325884	K562	blood:	n/a	n/a
44	ATF1	chr19:52310327-52310825	K562	blood:	n/a	n/a
45	ATF1	chr19:52308082-52308473	K562	blood:	n/a	n/a
46	ATF2	chr19:52430232-52430844	GM12878	blood:	n/a	n/a
47	ATF2	chr19:52531375-52531869	H1-hESC	embryonic stem cell:	n/a	n/a
48	ATF2	chr19:52429861-52430848	H1-hESC	embryonic stem cell:	n/a	n/a
49	ATF2	chr19:52430063-52430883	GM12878	blood:	n/a	n/a
50	ATF2	chr19:52551876-52552336	GM12878	blood:	n/a	n/a

(count:7695 , 50 per page) page: 1 2 3 4 5 6 7 ... 154

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:52391480-52391530	SK-N-SH_RA	brain:	n/a
2	chr19:52430771-52430821	SK-N-SH_RA	brain:	n/a
3	chr19:52391789-52391839	SK-N-SH_RA	brain:	n/a
4	chr19:52490339-52490389	SK-N-SH	brain:	n/a
5	chr19:52391250-52391300	BE2_C	brain:	n/a
6	chr19:52430378-52430428	NB4	blood:	n/a
7	chr19:52531800-52531850	PFSK-1	brain:	n/a
8	chr19:52391166-52391216	BE2_C	brain:	n/a
9	chr19:52453199-52453249	GM12878	blood:	n/a
10	chr19:52391480-52391530	SK-N-SH_RA	brain:	n/a
11	chr19:52430771-52430821	SK-N-SH_RA	brain:	n/a
12	chr19:52391789-52391839	SK-N-SH_RA	brain:	n/a
13	chr19:52490339-52490389	SK-N-SH	brain:	n/a
14	chr19:52391250-52391300	BE2_C	brain:	n/a
15	chr19:52430378-52430428	NB4	blood:	n/a
16	chr19:52531800-52531850	PFSK-1	brain:	n/a
17	chr19:52391166-52391216	BE2_C	brain:	n/a
18	chr19:52453199-52453249	GM12878	blood:	n/a
19	chr19:52387302-52387352	SK-N-MC	brain:	n/a
20	chr19:52531777-52531827	SK-N-MC	brain:	n/a
21	chr19:52511502-52511552	MCF10A-Er-Src	breast:	n/a
22	chr19:52430771-52430821	HUVEC	blood vessel:	n/a
23	chr19:52511571-52511621	Caco-2	colon:	n/a
24	chr19:52429980-52430030	MCF10A-Er-Src	breast:	n/a
25	chr19:52511370-52511420	PrEC	prostate:	n/a
26	chr19:52408044-52408094	SK-N-MC	brain:	n/a
27	chr19:52391234-52391284	MCF10A-Er-Src	breast:	n/a
28	chr19:52456033-52456083	SK-N-SH	brain:	n/a
29	chr19:52383388-52383438	HEEpiC	esophagus:	n/a
30	chr19:52598653-52598703	SK-N-SH	brain:	n/a
31	chr19:52514445-52514495	SKMC	muscle:	n/a
32	chr19:52602607-52602657	PrEC	prostate:	n/a
33	chr19:52534849-52534899	HCPEpiC	choroid plexus:	n/a
34	chr19:52430190-52430240	HL-60	blood:	n/a
35	chr19:52552126-52552176	ProgFib	skin:	n/a
36	chr19:52511510-52511560	SKMC	muscle:	n/a
37	chr19:52452368-52452418	ProgFib	skin:	n/a
38	chr19:52490069-52490119	AG10803	skin:	n/a
39	chr19:52408322-52408372	SK-N-SH_RA	brain:	n/a
40	chr19:52391304-52391354	Hela-S3	cervix:	n/a
41	chr19:52517812-52517862	Hela-S3	cervix:	n/a
42	chr19:52598653-52598703	HNPCEpiC	eye:	n/a
43	chr19:52511510-52511560	ovcar-3	ovarian:	n/a
44	chr19:52511591-52511641	SAEC	small airway:	n/a
45	chr19:52490069-52490119	AG09319	gingival:	n/a
46	chr19:52595995-52596045	CMK	blood:	n/a
47	chr19:52430533-52430583	K562	blood:	n/a
48	chr19:52514445-52514495	HNPCEpiC	eye:	n/a
49	chr19:52407881-52407931	PrEC	prostate:	n/a
50	chr19:52456033-52456083	RPTEC	kidney:	n/a

(count:274 , 50 per page) page: 1 2 3 4 5 6

No.	Distal block	Cell Line	Cell type
1	chr19:52505792..52508721-chr19:52508745..52510536,2	K562	blood:
2	chr19:52406644..52409429-chr19:52439274..52441608,2	K562	blood:
3	chr19:52607030..52609292-chr19:52641684..52643260,2	MCF-7	breast:
4	chr19:52429682..52431408-chr19:52488412..52490236,2	MCF-7	breast:
5	chr19:52276673..52280164-chr19:52282818..52285281,3	K562	blood:
6	chr19:52288417..52292749-chr19:52303564..52308075,7	MCF-7	breast:
7	chr19:52530218..52533559-chr19:52550553..52554398,9	K562	blood:
8	chr19:52528365..52531189-chr19:52598052..52600435,2	K562	blood:
9	chr19:52525865..52528681-chr19:52539108..52541347,2	MCF-7	breast:
10	chr15:54268702..54269329-chr19:52546893..52547395,2	MCF-7	breast:
11	chr19:52551202..52553746-chr19:52596231..52599092,3	K562	blood:
12	chr19:52519062..52520943-chr19:52595428..52598205,2	K562	blood:
13	chr19:52191235..52193231-chr19:52302966..52304607,2	MCF-7	breast:
14	chr19:52181121..52183567-chr19:52279496..52282449,2	K562	blood:
15	chr19:52575483..52578270-chr19:52584112..52586407,2	K562	blood:
16	chr19:52346478..52349117-chr19:52352769..52355551,2	K562	blood:
17	chr17:41463652..41467895-chr19:52468139..52469659,5	K562	blood:
18	chr19:52269346..52271738-chr19:52273410..52277199,3	K562	blood:
19	chr19:52527946..52533480-chr19:52550519..52554398,10	K562	blood:
20	chr19:52300406..52303800-chr19:52305611..52308534,3	K562	blood:
21	chr19:52553424..52554983-chr19:52593022..52595719,2	K562	blood:
22	chr19:52407918..52408595-chr19:52430246..52431038,2	NB4	blood:
23	chr19:52192175..52194202-chr19:52301235..52302921,2	MCF-7	breast:
24	chr19:52431477..52433733-chr19:52438060..52439742,2	K562	blood:
25	chr19:52594754..52596918-chr19:52597024..52599025,2	MCF-7	breast:
26	chr19:52523062..52525368-chr19:52526068..52528537,2	MCF-7	breast:
27	chr19:52357027..52358748-chr19:52365567..52367479,2	K562	blood:
28	chr19:52551934..52553861-chr19:52580531..52583502,3	K562	blood:
29	chr19:52299823..52301344-chr19:52301707..52303402,2	K562	blood:
30	chr19:52523223..52526204-chr19:52529257..52530831,2	MCF-7	breast:
31	chr19:52286760..52288347-chr19:52288825..52290368,2	MCF-7	breast:
32	chr19:52575600..52577356-chr19:52580817..52583793,2	K562	blood:
33	chr19:52204118..52207726-chr19:52271324..52274498,3	K562	blood:
34	chr19:52613950..52617876-chr19:52619637..52624173,4	K562	blood:
35	chr19:52160319..52160911-chr19:52311474..52312517,3	K562	blood:
36	chr19:52405347..52407239-chr19:52596697..52599121,2	K562	blood:
37	chr19:52404055..52405950-chr19:52406335..52408265,2	K562	blood:
38	chr19:52295157..52297364-chr19:52306223..52308854,2	MCF-7	breast:
39	chr19:52281378..52282199-chr19:52310053..52311134,3	MCF-7	breast:
40	chr19:52536419..52538277-chr19:52545256..52546905,2	MCF-7	breast:
41	chr19:52573383..52575411-chr19:52583910..52586423,2	K562	blood:
42	chr19:52368961..52371944-chr19:52488370..52489991,2	K562	blood:
43	chr19:52429682..52431408-chr19:52488412..52490236,2	MCF-7	breast:
44	chr19:52237851..52239794-chr19:52278357..52281103,2	K562	blood:
45	chr19:52504954..52508127-chr19:52509036..52512769,6	K562	blood:
46	chr19:52281378..52282199-chr19:52310053..52311134,3	MCF-7	breast:
47	chr19:52271923..52274494-chr19:52279837..52282984,3	MCF-7	breast:
48	chr19:52351131..52353824-chr19:52364470..52367070,2	K562	blood:
49	chr19:52286503..52287282-chr19:52313444..52314004,2	MCF-7	breast:
50	chr19:52551202..52553746-chr19:52596231..52599092,3	K562	blood:

(count:104 , 50 per page) page: 1 2 3

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF841-2	chr19:52598828-52598991	NONHSAT067511
2	lnc-ZNF577-3	chr19:52307980-52308424	NONHSAT067478
3	lnc-ZNF649-3	chr19:52383971-52384130	NONHSAT067491
4	lnc-ZNF613-4	chr19:52391278-52391379	ENSG00000268095.1
5	lnc-ZNF649-3	chr19:52374881-52375100	NONHSAT067486
6	lnc-ZNF577-2	chr19:52343756-52344198	ENSG00000268316.1
7	lnc-ZNF649-3	chr19:52380535-52380630	NR_024181
8	lnc-ZNF577-3	chr19:52307980-52308507	NONHSAT067477
9	lnc-ZNF577-2	chr19:52317206-52317230	NONHSAT067481
10	lnc-ZNF614-1	chr19:52507035-52507153	NONHSAT067506
11	lnc-ZNF613-4	chr19:52399414-52399549	ENSG00000268095.1
12	lnc-ZNF615-1	chr19:52490023-52490058	NONHSAT067502
13	lnc-ZNF841-1	chr19:52566900-52566956	ENSG00000260160.1
14	lnc-ZNF649-3	chr19:52381642-52381768	NR_024181
15	lnc-ZNF615-1	chr19:52476220-52477784	NONHSAT067502
16	lnc-ZNF432-1	chr19:52570752-52570863	NONHSAT067513
17	lnc-ZNF613-2	chr19:52567017-52567356	ENSG00000245697
18	lnc-ZNF614-1	chr19:52510546-52510583	NONHSAT067506
19	lnc-ZNF649-3	chr19:52383932-52384130	NR_024181
20	lnc-FPR1-1	chr19:52284430-52284578	XLOC_013388
21	lnc-ZNF649-3	chr19:52390841-52391144	NONHSAT067491
22	lnc-ZNF577-3	chr19:52314710-52314992	NONHSAT067478
23	lnc-ZNF613-1	chr19:52479644-52479826	NR_103847
24	lnc-ZNF649-3	chr19:52359056-52359220	NR_024181
25	lnc-ZNF613-3	chr19:52439281-52439378	NONHSAT067495
26	lnc-ZNF614-1	chr19:52511394-52511470	NONHSAT067506
27	lnc-ZNF649-3	chr19:52390074-52390165	NR_024181
28	lnc-ZNF613-1	chr19:52479414-52479826	NONHSAT067503
29	lnc-ZNF841-1	chr19:52561743-52562360	ENSG00000260160.1
30	lnc-ZNF613-2	chr19:52567872-52568844	ENSG00000245697
31	lnc-ZNF649-3	chr19:52359057-52359220	NONHSAT067486
32	lnc-ZNF613-2	chr19:52569769-52570821	ENSG00000245697
33	lnc-ZNF577-2	chr19:52343146-52343370	NONHSAT067481
34	lnc-ZNF613-1	chr19:52484180-52484603	NONHSAT067501
35	lnc-ZNF649-3	chr19:52364157-52364231	NR_024181
36	lnc-ZNF613-1	chr19:52479644-52479826	ENSG00000246125
37	lnc-ZNF614-1	chr19:52510546-52510583	NONHSAT067507
38	lnc-ZNF649-3	chr19:52383932-52384130	NONHSAT067489
39	lnc-ZNF613-1	chr19:52479226-52479321	NONHSAT067499
40	lnc-ZNF577-2	chr19:52343024-52343132	ENSG00000268316.1
41	lnc-ZNF613-3	chr19:52430400-52430793	NONHSAT067495
42	lnc-ZNF613-7	chr19:52550187-52550516	NONHSAT067510
43	lnc-ZNF649-3	chr19:52359063-52359220	NONHSAT067488
44	lnc-FPR1-1	chr19:52282890-52283234	XLOC_013388
45	lnc-ZNF613-7	chr19:52551253-52553075	NONHSAT067510
46	lnc-ZNF432-1	chr19:52579297-52579642	NONHSAT067513
47	lnc-ZNF649-1	chr19:52424420-52424951	expReg_chr19_7234_-
48	lnc-ZNF649-3	chr19:52390074-52390165	NONHSAT067489
49	lnc-ZNF613-1	chr19:52484180-52484620	NR_103847
50	lnc-ZNF613-1	chr19:52479644-52479826	ENSG00000269235.1

No data

Variant related genes	Relation type
ZNF649	TF binding region
ZNF841	TF binding region
ZNF614	TF binding region
ZNF577	TF binding region
HCCAT3	TF binding region
ENSG00000260160	TF binding region
ENSG00000269483	TF binding region
ENSG00000268316	TF binding region
FPR1	TF binding region
ENSG00000270248	TF binding region
ZNF613	TF binding region
ZNF350	TF binding region
FPR3	TF binding region
ENSG00000268095	TF binding region
ZNF615	TF binding region
ZNF432	TF binding region
ZNF649	CpG island
ZNF841	CpG island
ZNF614	CpG island
ZNF577	CpG island
HCCAT3	CpG island
ENSG00000260160	CpG island
ENSG00000269483	CpG island
ENSG00000268316	CpG island
FPR1	CpG island
ENSG00000270248	CpG island
ZNF613	CpG island
ZNF350	CpG island
FPR3	CpG island
ENSG00000268095	CpG island
ZNF615	CpG island
ZNF432	CpG island
ENSG00000256683	chromatin interactions
ENSG00000161551	chromatin interactions
ENSG00000268458	chromatin interactions
ENSG00000269235	chromatin interactions
ENSG00000259669	chromatin interactions
ENSG00000196214	chromatin interactions
ENSG00000142556	chromatin interactions
ENSG00000269403	chromatin interactions
ENSG00000171049	chromatin interactions
ENSG00000270248	chromatin interactions
ENSG00000197619	chromatin interactions
ENSG00000256087	chromatin interactions
ENSG00000269483	chromatin interactions
ENSG00000176024	chromatin interactions
ENSG00000197608	chromatin interactions
ENSG00000105509	chromatin interactions
ENSG00000187474	chromatin interactions
ENSG00000160318	chromatin interactions
ENSG00000105568	chromatin interactions
ENSG00000182310	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000122958	chromatin interactions
ENSG00000238486	chromatin interactions
ENSG00000202408	chromatin interactions
ENSG00000204611	chromatin interactions
ENSG00000198093	chromatin interactions
ENSG00000104343	chromatin interactions
ENSG00000171051	chromatin interactions
ENSG00000243680	chromatin interactions
ENSG00000268095	chromatin interactions
ENSG00000236383	chromatin interactions
SUSD1	miRNA target sites
PIGT	miRNA target sites
MRPL10	miRNA target sites
TWF1	miRNA target sites
CAMTA1	miRNA target sites
NCBP2	miRNA target sites
EIF2AK1	miRNA target sites
GIGYF1	miRNA target sites
IGSF1	miRNA target sites
YTHDC2	miRNA target sites
OSBPL11	miRNA target sites
HIF1A	miRNA target sites

Extended variants
information (count: 13930 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:13930 , 50 per page) page: 1 2 3 4 5 6 7 ... 279

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs144306253	chr19:52272365-52272366	Genic enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs373703675	chr19:52272376-52272377	Genic enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs377643185	chr19:52272388-52272389	Genic enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs149070750	chr19:52272406-52272407	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs202141015	chr19:52272434-52272435	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs145770786	chr19:52272452-52272453	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs200923071	chr19:52272498-52272499	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs371397137	chr19:52272500-52272501	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs138440882	chr19:52272525-52272526	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs374503176	chr19:52272544-52272545	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs141356657	chr19:52272549-52272550	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs35073187	chr19:52272550-52272551	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs531939913	chr19:52272575-52272576	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs201052364	chr19:52272580-52272581	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs199892175	chr19:52272624-52272625	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs116382209	chr19:52272651-52272652	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs141392986	chr19:52272653-52272654	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs199504632	chr19:52272659-52272660	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs199737333	chr19:52272664-52272665	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs370473200	chr19:52272692-52272693	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs554489638	chr19:52272707-52272708	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs150834998	chr19:52272709-52272710	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs138212063	chr19:52272715-52272716	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs200871443	chr19:52272727-52272728	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs201896254	chr19:52272754-52272755	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs34881001	chr19:52272758-52272759	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs200897681	chr19:52272799-52272800	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs35759170	chr19:52272804-52272805	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs143928920	chr19:52272817-52272818	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs373596683	chr19:52272818-52272819	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs148745659	chr19:52272840-52272841	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs142300299	chr19:52272850-52272851	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs368100562	chr19:52272852-52272853	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs370498509	chr19:52272859-52272860	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs568666289	chr19:52272864-52272865	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs374403356	chr19:52272886-52272887	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs140469815	chr19:52272916-52272917	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs144435404	chr19:52272919-52272920	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs547635258	chr19:52272947-52272948	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs543606414	chr19:52272975-52272976	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs555321111	chr19:52272996-52272997	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs201955289	chr19:52272997-52272998	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs368364964	chr19:52272999-52273000	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs79685117	chr19:52273017-52273018	Genic enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs559201676	chr19:52273066-52273067	Genic enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs527704200	chr19:52273081-52273082	Genic enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs545760267	chr19:52273115-52273116	Genic enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs564241817	chr19:52273180-52273181	Genic enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs59594213	chr19:52273194-52273195	Genic enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs34773942	chr19:52273201-52273202	Enhancers Genic enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Adrenocortical carcinoma	18281524	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	22522925	CNVD
Autism	20531469	CNVD
Breast cancer	21785460	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Lung adenocarcinoma	21935476	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:9893 , 50 per page) page: 1 2 3 4 5 6 7 ... 198

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52268600-52274400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr19:52269000-52274400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:52270000-52274800	Weak transcription	Ovary	ovary
4	chr19:52270400-52273000	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
5	chr19:52270600-52273200	Genic enhancers	Primary monocytes fromperipheralblood	blood
6	chr19:52271200-52273200	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
7	chr19:52271800-52272400	Weak transcription	Primary B cells from cord blood	blood
8	chr19:52271800-52272600	ZNF genes & repeats	Spleen	Spleen
9	chr19:52272000-52273000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr19:52272000-52274800	Weak transcription	K562	blood
11	chr19:52272200-52273000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr19:52272400-52272600	Enhancers	Placenta	Placenta
13	chr19:52272400-52273000	Enhancers	Primary B cells from cord blood	blood
14	chr19:52272600-52281000	Weak transcription	Placenta	Placenta
15	chr19:52273000-52273200	Active TSS	Primary B cells from cord blood	blood
16	chr19:52273000-52274400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr19:52273000-52274400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr19:52273000-52276000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr19:52273200-52273400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
20	chr19:52273200-52273400	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr19:52273200-52276600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr19:52273400-52273600	Enhancers	Primary B cells from cord blood	blood
23	chr19:52273400-52273800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr19:52273600-52274200	Weak transcription	Primary B cells from cord blood	blood
25	chr19:52273800-52274400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr19:52274200-52274600	Enhancers	Primary B cells from cord blood	blood
27	chr19:52274400-52274600	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr19:52274400-52274600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr19:52274400-52275000	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr19:52274400-52275000	Enhancers	Primary hematopoietic stem cells	blood
31	chr19:52274400-52275400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr19:52274600-52274800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr19:52274600-52275400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr19:52274800-52275000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr19:52274800-52275200	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr19:52274800-52275200	Active TSS	Ovary	ovary
37	chr19:52274800-52275400	Enhancers	K562	blood
38	chr19:52275000-52275200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr19:52275000-52275600	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr19:52275000-52276600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr19:52275200-52275400	Bivalent Enhancer	Primary B cells from cord blood	blood
42	chr19:52275200-52275400	Bivalent Enhancer	Adipose Nuclei	Adipose
43	chr19:52275200-52275400	Enhancers	Osteobl	bone
44	chr19:52275200-52275600	Bivalent Enhancer	Ovary	ovary
45	chr19:52275200-52275800	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr19:52275400-52275800	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
47	chr19:52275400-52280600	Weak transcription	K562	blood
48	chr19:52275600-52275800	Active TSS	Primary hematopoietic stem cells	blood
49	chr19:52276000-52276400	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr19:52276400-52276800	Weak transcription	Monocytes-CD14+_RO01746	blood

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