Variant report

Variant	nsv537183
Chromosome Location	chr4:93270083-93464386
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:93404272..93404961-chr4:93422474..93423086,2	MCF-7	breast:
2	chr4:93384358..93386319-chr4:93419609..93421147,2	K562	blood:
3	chr4:93404272..93404961-chr4:93422474..93423086,2	MCF-7	breast:
4	chr4:93404272..93405260-chr4:93422586..93423310,3	MCF-7	breast:
5	chr4:93377562..93379426-chr4:93380261..93382366,2	K562	blood:
6	chr4:93371557..93373826-chr4:93379940..93382527,2	K562	blood:
7	chr18:73742291..73742791-chr4:93354792..93355293,2	MCF-7	breast:
8	chr4:93377562..93379426-chr4:93380261..93382366,2	K562	blood:
9	chr4:93404272..93405260-chr4:93422586..93423310,3	MCF-7	breast:
10	chr17:72488926..72489564-chr4:93376692..93377509,2	MCF-7	breast:
11	chr4:93434886..93436541-chr4:93486388..93487907,2	MCF-7	breast:
12	chr4:93371557..93373826-chr4:93379940..93382527,2	K562	blood:
13	chr4:93384358..93386319-chr4:93419609..93421147,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-9B6.1.1-4	chr4:93417224-93417476	ucscGeneNc_uc010ikw_1
2	lnc-RP11-9B6.1.1-4	chr4:93409417-93409530	ucscGeneNc_uc010ikw_1
3	lnc-RP11-9B6.1.1-4	chr4:93402672-93403529	ucscGeneNc_uc010ikw_1

No data

Extended variants
information (count: 7454 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:7454 , 50 per page) page: 1 2 3 4 5 6 7 ... 150

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138839835	chr4:93270091-93270092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs534703903	chr4:93270098-93270099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs191341491	chr4:93270135-93270136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs183922227	chr4:93270142-93270143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs376754780	chr4:93270144-93270145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs34971419	chr4:93270160-93270161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs151286608	chr4:93270170-93270171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs537518812	chr4:93270238-93270239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs190501150	chr4:93270287-93270288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs576284121	chr4:93270288-93270289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs545358029	chr4:93270298-93270299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs142789506	chr4:93270404-93270405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs558883799	chr4:93270432-93270433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572056308	chr4:93270483-93270484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs574158062	chr4:93270487-93270488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs147276131	chr4:93270505-93270506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs148320290	chr4:93270534-93270535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs375789177	chr4:93270551-93270552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs141428418	chr4:93270566-93270567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs182214904	chr4:93270626-93270627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs532556879	chr4:93270635-93270636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs150823808	chr4:93270641-93270642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs566246659	chr4:93270672-93270673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs186809839	chr4:93270700-93270701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs535216653	chr4:93270701-93270702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs202209315	chr4:93270719-93270720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs556866909	chr4:93270726-93270727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs189944644	chr4:93270749-93270750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs181693797	chr4:93270752-93270753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs185379298	chr4:93270763-93270764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575138247	chr4:93270770-93270771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs139431260	chr4:93270783-93270784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs190229103	chr4:93270784-93270785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs558740896	chr4:93270806-93270807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs76303319	chr4:93270945-93270946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs541289496	chr4:93270988-93270989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs182090147	chr4:93271014-93271015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs554294089	chr4:93271017-93271018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574356859	chr4:93271027-93271028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs543152175	chr4:93271053-93271054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs186037834	chr4:93271061-93271062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs532032484	chr4:93271075-93271076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs192094881	chr4:93271093-93271094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs559863326	chr4:93271106-93271107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs144516170	chr4:93271114-93271115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs183927802	chr4:93271142-93271143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs189223058	chr4:93271165-93271166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs73839290	chr4:93271167-93271168	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs80177511	chr4:93271168-93271169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs551144123	chr4:93271180-93271181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	18414403	CNVD
primary effusion lymphomas	17116491	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Olfactory neuroblastoma	18408657	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
Acute monocytic leukemia	16498392	CNVD
Multiple myeloma	16616336	CNVD
Esophageal adenocarcinoma	18820669	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Parkinson disease	20877625	CNVD
Hirschsprung''s Disease	21712996	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	20164920	CNVD
Cancer	20164919	CNVD
Esophageal cancer	21851588	CNVD
Cancer	19907438	CNVD
early-passage human iPS cells	21368824	CNVD
Williams Syndrome	20824207	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:990 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93253600-93282600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:93272800-93274000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:93272800-93275200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:93273000-93273200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:93273000-93274400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:93273200-93273400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:93273200-93274800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:93273400-93274800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:93273800-93274000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:93273800-93275400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:93274000-93280000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:93274400-93274800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:93274600-93275400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:93274800-93275200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:93274800-93275200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:93274800-93275400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr4:93274800-93275600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr4:93274800-93275600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:93275200-93279400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:93275200-93280000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:93275200-93280600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:93275400-93280000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr4:93275400-93280200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr4:93275600-93279400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr4:93275600-93280000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:93276200-93276400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:93276400-93278600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr4:93278600-93279000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:93279000-93279200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:93279200-93279400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr4:93279200-93279400	Enhancers	Pancreas	Pancrea
32	chr4:93279200-93281600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:93279400-93279600	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr4:93279400-93279600	Enhancers	Fetal Brain Male	brain
35	chr4:93279400-93285600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr4:93279600-93280000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr4:93279600-93280600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr4:93279600-93280600	Weak transcription	Fetal Brain Male	brain
39	chr4:93279800-93281000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr4:93280000-93280400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr4:93280000-93281600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr4:93280000-93281800	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr4:93280000-93283200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr4:93280000-93283200	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr4:93280000-93283400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:93280200-93283600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr4:93280400-93281200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr4:93280400-93281600	Enhancers	Brain Germinal Matrix	brain
49	chr4:93280600-93280800	Enhancers	Fetal Brain Male	brain
50	chr4:93280600-93280800	Enhancers	Fetal Lung	lung

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