Variant report

Variant	nsv538270
Chromosome Location	chr6:63682752-64147241
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2394)
CpG islands
(count:1100)
Chromatin interactive
region (count:46)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2394 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:64058006-64058016	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:63982331-63982659	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:64136751-64136984	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:64101330-64101949	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:64062913-64063349	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:64061842-64062271	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:64120990-64121278	HepG2	liver:	n/a	n/a
8	ATF1	chr6:64083127-64083308	K562	blood:	n/a	n/a
9	ATF2	chr6:64057519-64057901	GM12878	blood:	n/a	n/a
10	ATF2	chr6:64062307-64063405	GM12878	blood:	n/a	n/a
11	ATF2	chr6:64061990-64063362	GM12878	blood:	n/a	n/a
12	ATF3	chr6:64062702-64063222	GM12878	blood:	n/a	n/a
13	BACH1	chr6:63732724-63732911	H1-hESC	embryonic stem cell:	n/a	n/a
14	BACH1	chr6:64141029-64141057	H1-hESC	embryonic stem cell:	n/a	n/a
15	BATF	chr6:63934113-63934324	GM12878	blood:	n/a	n/a
16	BATF	chr6:64057503-64057905	GM12878	blood:	n/a	n/a
17	BATF	chr6:63824630-63824797	GM12878	blood:	n/a	n/a
18	BATF	chr6:63684432-63684699	GM12878	blood:	n/a	chr6:63684554-63684562
19	BATF	chr6:64057524-64057796	GM12878	blood:	n/a	n/a
20	BATF	chr6:63807210-63807411	GM12878	blood:	n/a	n/a
21	BATF	chr6:64086526-64086830	GM12878	blood:	n/a	chr6:64086675-64086686
22	BATF	chr6:63946532-63946753	GM12878	blood:	n/a	n/a
23	BATF	chr6:64062394-64062984	GM12878	blood:	n/a	n/a
24	BATF	chr6:63824586-63824792	GM12878	blood:	n/a	n/a
25	BATF	chr6:63807248-63807450	GM12878	blood:	n/a	n/a
26	BATF	chr6:63971782-63972019	GM12878	blood:	n/a	n/a
27	BCL11A	chr6:64062412-64062975	GM12878	blood:	n/a	n/a
28	BCL11A	chr6:63806476-63806656	GM12878	blood:	n/a	n/a
29	BCL11A	chr6:63807120-63807515	GM12878	blood:	n/a	n/a
30	BCL11A	chr6:64062308-64063061	GM12878	blood:	n/a	n/a
31	BCL11A	chr6:63807199-63807405	GM12878	blood:	n/a	n/a
32	BCL11A	chr6:63824585-63824882	GM12878	blood:	n/a	chr6:63824743-63824752
33	BCL11A	chr6:63684321-63684646	GM12878	blood:	n/a	n/a
34	BCL11A	chr6:64093726-64094062	GM12878	blood:	n/a	chr6:64093917-64093926
35	BCLAF1	chr6:64062312-64063311	GM12878	blood:	n/a	n/a
36	BCLAF1	chr6:64062213-64063430	GM12878	blood:	n/a	n/a
37	BHLHE40	chr6:63684342-63684727	GM12878	blood:	n/a	n/a
38	BHLHE40	chr6:63807126-63807476	GM12878	blood:	n/a	n/a
39	BHLHE40	chr6:64101403-64101854	HepG2	liver:	n/a	n/a
40	BHLHE40	chr6:63806449-63806803	GM12878	blood:	n/a	n/a
41	BHLHE40	chr6:64093740-64094165	GM12878	blood:	n/a	n/a
42	BHLHE40	chr6:64061987-64063282	GM12878	blood:	n/a	n/a
43	BHLHE40	chr6:63946547-63946562	GM12878	blood:	n/a	n/a
44	BRCA1	chr6:64057431-64057955	Hela-S3	cervix:	n/a	n/a
45	BRCA1	chr6:64061717-64062393	Hela-S3	cervix:	n/a	n/a
46	CBX3	chr6:63913525-63913779	K562	blood:	n/a	n/a
47	CBX3	chr6:64057343-64058015	HCT-116	colon:	n/a	chr6:64057602-64057613
48	CCNT2	chr6:64101527-64101618	K562	blood:	n/a	n/a
49	CEBPB	chr6:63955402-63955745	A549	lung:	n/a	chr6:63955575-63955586
50	CEBPB	chr6:64017774-64018004	A549	lung:	n/a	n/a

(count:1100 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:63940138-63940188	BE2_C	brain:	n/a
2	chr6:64029870-64029920	Jurkat	blood:	n/a
3	chr6:63940138-63940188	BE2_C	brain:	n/a
4	chr6:64029870-64029920	Jurkat	blood:	n/a
5	chr6:63984054-63984104	SK-N-SH	brain:	n/a
6	chr6:63985112-63985162	K562	blood:	n/a
7	chr6:63984054-63984104	PFSK-1	brain:	n/a
8	chr6:63947428-63947478	SK-N-SH	brain:	n/a
9	chr6:64030429-64030479	GM19239	blood:	n/a
10	chr6:63709255-63709305	RPTEC	kidney:	n/a
11	chr6:63940138-63940188	AG09319	gingival:	n/a
12	chr6:63921458-63921508	HL-60	blood:	n/a
13	chr6:63940138-63940188	AG09309	skin:	n/a
14	chr6:63947428-63947478	HepG2	liver:	n/a
15	chr6:63762988-63763038	SKMC	muscle:	n/a
16	chr6:63991020-63991070	AG10803	skin:	n/a
17	chr6:63921394-63921444	HCPEpiC	choroid plexus:	n/a
18	chr6:63874234-63874284	PANC-1	pancreas:	n/a
19	chr6:64030429-64030479	ProgFib	skin:	n/a
20	chr6:63921501-63921551	HMEC	breast:	n/a
21	chr6:63990177-63990227	GM12878	blood:	n/a
22	chr6:63709255-63709305	T-47D	breast:	n/a
23	chr6:63921458-63921508	NH-A	brain:	n/a
24	chr6:63762988-63763038	IMR90	lung:	fetal
25	chr6:63947428-63947478	T-47D	breast:	n/a
26	chr6:63984054-63984104	HCM	heart:	n/a
27	chr6:63947428-63947478	NB4	blood:	n/a
28	chr6:63990177-63990227	CMK	blood:	n/a
29	chr6:63873809-63873859	SKMC	muscle:	n/a
30	chr6:63921394-63921444	AG04449	skin:	fetal
31	chr6:63990177-63990227	HIPEpiC	eye:	n/a
32	chr6:63921501-63921551	AG10803	skin:	n/a
33	chr6:63874234-63874284	ProgFib	skin:	n/a
34	chr6:63874234-63874284	HCT-116	colon:	n/a
35	chr6:63874234-63874284	PrEC	prostate:	n/a
36	chr6:63873476-63873526	Hepatocyte	liver:	n/a
37	chr6:64042706-64042756	HRPEpiC	eye:	n/a
38	chr6:64042706-64042756	T-47D	breast:	n/a
39	chr6:63873476-63873526	ECC-1	luminal epithelium:	n/a
40	chr6:63985112-63985162	ProgFib	skin:	n/a
41	chr6:63940138-63940188	HRE	kidney:	n/a
42	chr6:63921501-63921551	PrEC	prostate:	n/a
43	chr6:64030429-64030479	HRCEpiC	kidney:	n/a
44	chr6:63990177-63990227	NHDF-neo	bronchial:	n/a
45	chr6:63921501-63921551	U87	brain:	n/a
46	chr6:63762988-63763038	HUVEC	blood vessel:	n/a
47	chr6:63947428-63947478	HMEC	breast:	n/a
48	chr6:63991020-63991070	NHBE	bronchial:	n/a
49	chr6:63921501-63921551	HCM	heart:	n/a
50	chr6:64042706-64042756	MCF10A-Er-Src	breast:	n/a

(count:46 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:64061604..64062576-chr6:64512267..64512790,2	MCF-7	breast:
2	chr6:64028950..64031387-chr6:64282272..64283955,2	MCF-7	breast:
3	chr6:64078716..64081417-chr6:64082620..64086041,3	MCF-7	breast:
4	chr6:64062103..64065068-chr6:64510364..64512443,2	MCF-7	breast:
5	chr6:64015576..64017897-chr6:64280584..64284136,3	MCF-7	breast:
6	chr6:63831166..63831711-chr6:63982020..63982633,2	MCF-7	breast:
7	chr6:64144543..64145560-chr6:64200616..64201610,32	MCF-7	breast:
8	chr6:64060326..64062411-chr6:64092797..64095365,2	K562	blood:
9	chr6:64062640..64063526-chr6:64474143..64474904,3	MCF-7	breast:
10	chr6:63971090..63973718-chr6:63975676..63978605,2	K562	blood:
11	chr6:64048299..64050444-chr6:64282578..64285155,2	MCF-7	breast:
12	chr6:64059286..64067591-chr6:64279675..64285580,14	MCF-7	breast:
13	chr6:63726588..63729343-chr6:63730639..63732811,2	K562	blood:
14	chr6:64060326..64062411-chr6:64092797..64095365,2	K562	blood:
15	chr6:64057634..64059161-chr6:64281523..64283392,2	MCF-7	breast:
16	chr6:63935123..63936664-chr6:63993478..63995873,2	MCF-7	breast:
17	chr6:63775743..63776456-chr6:63981994..63982859,3	MCF-7	breast:
18	chr6:64078716..64081417-chr6:64082620..64086041,3	MCF-7	breast:
19	chr6:63948917..63949801-chr6:64200742..64201532,2	MCF-7	breast:
20	chr6:63971090..63973718-chr6:63975676..63978605,2	K562	blood:
21	chr6:64052335..64054049-chr6:64060592..64063155,2	MCF-7	breast:
22	chr6:63981136..63982738-chr6:63987932..63990563,2	MCF-7	breast:
23	chr6:63726588..63729343-chr6:63730639..63732811,2	K562	blood:
24	chr6:63601380..63602369-chr6:63983063..63983726,2	MCF-7	breast:
25	chr6:64091757..64094702-chr6:64282353..64283883,2	MCF-7	breast:
26	chr6:63981136..63982738-chr6:63987932..63990563,2	MCF-7	breast:
27	chr6:64144526..64145534-chr6:64200616..64201618,23	MCF-7	breast:
28	chr6:64061712..64062525-chr6:64473904..64474743,3	MCF-7	breast:
29	chr6:64061577..64062551-chr6:64473988..64474844,2	MCF-7	breast:
30	chr6:63935123..63936664-chr6:63993478..63995873,2	MCF-7	breast:
31	chr6:63986059..63987926-chr6:63989069..63990870,2	MCF-7	breast:
32	chr6:64062639..64063365-chr6:64283555..64284772,4	MCF-7	breast:
33	chr6:64062641..64063566-chr6:64308201..64309203,4	MCF-7	breast:
34	chr6:64144471..64145931-chr6:64200574..64201618,46	MCF-7	breast:
35	chr6:64104502..64107247-chr6:64280921..64282714,2	K562	blood:
36	chr6:64082531..64084931-chr6:64282447..64284673,2	MCF-7	breast:
37	chr6:63775743..63776456-chr6:63981994..63982859,3	MCF-7	breast:
38	chr6:64014940..64016503-chr6:64298402..64301314,2	MCF-7	breast:
39	chr6:64079102..64081894-chr6:64099823..64102338,2	K562	blood:
40	chr6:64061851..64067000-chr6:64282014..64286349,7	MCF-7	breast:
41	chr6:64062812..64063338-chr6:64512230..64512915,2	MCF-7	breast:
42	chr6:64015472..64018301-chr6:64281890..64284497,2	MCF-7	breast:
43	chr6:63831166..63831711-chr6:63982020..63982633,2	MCF-7	breast:
44	chr6:64052335..64054049-chr6:64060592..64063155,2	MCF-7	breast:
45	chr6:64080126..64083396-chr6:64281737..64284013,3	MCF-7	breast:
46	chr6:63986059..63987926-chr6:63989069..63990870,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FKBP1C-1	chr6:63937390-63937648	NONHSAT113340
2	lnc-LGSN-3	chr6:64146297-64147330	l_3198_chr6:64146296-64150277_placenta
3	lnc-PTP4A1-8	chr6:64102127-64102511	NONHSAT113341

No data

Variant related genes	Relation type
FKBP1C	TF binding region
ENSG00000218617	TF binding region
SPTLC1P3	TF binding region
ENSG00000217477	TF binding region
ENSG00000218048	TF binding region
ENSG00000218274	TF binding region
LGSN	TF binding region
ENSG00000266682	TF binding region
ENSG00000218520	TF binding region
FKBP1C	CpG island
ENSG00000218617	CpG island
SPTLC1P3	CpG island
ENSG00000217477	CpG island
ENSG00000218048	CpG island
ENSG00000218274	CpG island
LGSN	CpG island
ENSG00000266682	CpG island
ENSG00000218520	CpG island
ENSG00000266680	chromatin interactions
ENSG00000218617	chromatin interactions
ENSG00000112245	chromatin interactions

Extended variants
information (count: 12518 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:12518 , 50 per page) page: 1 2 3 4 5 6 7 ... 251

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577399272	chr6:63682768-63682769	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs551334424	chr6:63682769-63682770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs557282917	chr6:63682905-63682906	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs192982309	chr6:63682908-63682909	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs537564910	chr6:63682971-63682972	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs545271818	chr6:63682981-63682982	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs555813807	chr6:63682994-63682995	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs570914941	chr6:63683021-63683022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs571284357	chr6:63683031-63683032	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs116620589	chr6:63683036-63683037	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs572298237	chr6:63683047-63683048	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs542482870	chr6:63683090-63683091	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs142582840	chr6:63683099-63683100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs536708428	chr6:63683103-63683104	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs184612116	chr6:63683171-63683172	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs73496838	chr6:63683172-63683173	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs544738703	chr6:63683175-63683176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs562922861	chr6:63683263-63683264	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs573504976	chr6:63683280-63683281	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs73496839	chr6:63683301-63683302	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs545383136	chr6:63683304-63683305	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs146300324	chr6:63683333-63683334	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs189549330	chr6:63683350-63683351	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs180685240	chr6:63683380-63683381	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs186472295	chr6:63683437-63683438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547393074	chr6:63683519-63683520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs189623425	chr6:63683526-63683527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs113931764	chr6:63683530-63683531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs181921982	chr6:63683588-63683589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs139464110	chr6:63683589-63683590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs144302313	chr6:63683653-63683654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs549351103	chr6:63683677-63683678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs569454604	chr6:63683772-63683773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs187096541	chr6:63683807-63683808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs191432929	chr6:63683845-63683846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs151053368	chr6:63683859-63683860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs527575821	chr6:63683881-63683882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs183344043	chr6:63683914-63683915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs543601391	chr6:63683924-63683925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs556734617	chr6:63683961-63683962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs186158358	chr6:63683998-63683999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375636078	chr6:63684019-63684020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs35245053	chr6:63684046-63684047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs560552037	chr6:63684055-63684056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs540824459	chr6:63684079-63684080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs572323860	chr6:63684095-63684096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs542919505	chr6:63684102-63684103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs537079601	chr6:63684118-63684119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs4235959	chr6:63684121-63684122	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs76586302	chr6:63684154-63684155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Cancer	20164920	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:767 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63681400-63683000	Enhancers	Fetal Intestine Large	intestine
2	chr6:63682600-63683200	Enhancers	Fetal Intestine Small	intestine
3	chr6:63682600-63683400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:63683200-63683400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:63683400-63690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:63690600-63690800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:63690600-63691000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:63699600-63703600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:63703400-63705000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:63703600-63704600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:63704000-63704600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:63707600-63709600	Enhancers	Fetal Heart	heart
13	chr6:63707800-63708400	Enhancers	Fetal Intestine Large	intestine
14	chr6:63707800-63708600	Enhancers	Fetal Intestine Small	intestine
15	chr6:63708000-63708200	Enhancers	HepG2	liver
16	chr6:63708200-63709200	Weak transcription	HepG2	liver
17	chr6:63708400-63709600	Weak transcription	Fetal Intestine Large	intestine
18	chr6:63708600-63709000	Weak transcription	Fetal Intestine Small	intestine
19	chr6:63708600-63710200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:63708600-63710200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr6:63708800-63709000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:63708800-63710000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:63708800-63710200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:63708800-63710200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:63708800-63710600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:63709000-63709600	Enhancers	Fetal Intestine Small	intestine
27	chr6:63709000-63709800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:63709000-63710000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:63709000-63710000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:63709000-63710000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:63709000-63710200	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr6:63709000-63710200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:63709000-63710200	Enhancers	HMEC	breast
34	chr6:63709000-63710200	Enhancers	NHEK	skin
35	chr6:63709000-63710600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr6:63709000-63710600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr6:63709200-63709800	Enhancers	HepG2	liver
38	chr6:63709600-63710000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:63709600-63710000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:63709600-63710000	Flanking Active TSS	Fetal Heart	heart
41	chr6:63709600-63710000	Enhancers	Fetal Intestine Large	intestine
42	chr6:63709600-63710800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:63710000-63710400	Enhancers	Fetal Heart	heart
44	chr6:63710600-63720600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:63720400-63722600	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr6:63720600-63721600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr6:63720600-63722400	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr6:63721200-63721800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:63721200-63722600	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr6:63721400-63722200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links