Variant report

Variant	nsv538716
Chromosome Location	chr7:6365534-6400845
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:6388543-6388891	HepG2	liver:	n/a	n/a
2	ARID3A	chr7:6388618-6388920	K562	blood:	n/a	n/a
3	ATF1	chr7:6388405-6388876	K562	blood:	n/a	n/a
4	ATF2	chr7:6388443-6388988	H1-hESC	embryonic stem cell:	n/a	chr7:6388596-6388607
5	ATF2	chr7:6388420-6388909	GM12878	blood:	n/a	chr7:6388596-6388607
6	ATF2	chr7:6388437-6388937	H1-hESC	embryonic stem cell:	n/a	chr7:6388596-6388607
7	ATF2	chr7:6388529-6388924	GM12878	blood:	n/a	chr7:6388596-6388607
8	ATF3	chr7:6388479-6388902	GM12878	blood:	n/a	chr7:6388594-6388609 chr7:6388598-6388605 chr7:6388595-6388608 chr7:6388595-6388606 chr7:6388595-6388608 chr7:6388596-6388607 chr7:6388598-6388606 chr7:6388596-6388607
9	ATF3	chr7:6388442-6388841	H1-hESC	embryonic stem cell:	n/a	chr7:6388594-6388609 chr7:6388598-6388605 chr7:6388595-6388608 chr7:6388595-6388606 chr7:6388595-6388608 chr7:6388596-6388607 chr7:6388598-6388606 chr7:6388596-6388607
10	ATF3	chr7:6388437-6389070	A549	lung:	n/a	chr7:6388594-6388609 chr7:6388598-6388605 chr7:6388595-6388608 chr7:6388595-6388606 chr7:6388595-6388608 chr7:6388596-6388607 chr7:6388598-6388606 chr7:6388596-6388607
11	ATF3	chr7:6398701-6398975	K562	blood:	n/a	n/a
12	ATF3	chr7:6388397-6388976	HepG2	liver:	n/a	chr7:6388594-6388609 chr7:6388598-6388605 chr7:6388595-6388608 chr7:6388595-6388606 chr7:6388595-6388608 chr7:6388596-6388607 chr7:6388598-6388606 chr7:6388596-6388607
13	ATF3	chr7:6388356-6388835	K562	blood:	n/a	chr7:6388594-6388609 chr7:6388598-6388605 chr7:6388595-6388608 chr7:6388595-6388606 chr7:6388595-6388608 chr7:6388596-6388607 chr7:6388598-6388606 chr7:6388596-6388607
14	ATF3	chr7:6388385-6388986	A549	lung:	n/a	chr7:6388594-6388609 chr7:6388598-6388605 chr7:6388595-6388608 chr7:6388595-6388606 chr7:6388595-6388608 chr7:6388596-6388607 chr7:6388598-6388606 chr7:6388596-6388607
15	ATF3	chr7:6388456-6389065	K562	blood:	n/a	chr7:6388594-6388609 chr7:6388598-6388605 chr7:6388595-6388608 chr7:6388595-6388606 chr7:6388595-6388608 chr7:6388596-6388607 chr7:6388598-6388606 chr7:6388596-6388607
16	BACH1	chr7:6388532-6388708	H1-hESC	embryonic stem cell:	n/a	n/a
17	BCL3	chr7:6371973-6372304	GM12878	blood:	n/a	n/a
18	BCL3	chr7:6388503-6388987	A549	lung:	n/a	n/a
19	BCLAF1	chr7:6388469-6388989	GM12878	blood:	n/a	n/a
20	BHLHE40	chr7:6388411-6388912	K562	blood:	n/a	chr7:6388446-6388462
21	BHLHE40	chr7:6387976-6388072	K562	blood:	n/a	n/a
22	BHLHE40	chr7:6388098-6388876	GM12878	blood:	n/a	chr7:6388115-6388131 chr7:6388446-6388462
23	BHLHE40	chr7:6383439-6383454	K562	blood:	n/a	n/a
24	BRCA1	chr7:6388496-6388723	GM12878	blood:	n/a	n/a
25	BRCA1	chr7:6388497-6388819	HepG2	liver:	n/a	n/a
26	BRCA1	chr7:6388593-6388823	H1-hESC	embryonic stem cell:	n/a	n/a
27	BRCA1	chr7:6388417-6388923	Hela-S3	cervix:	n/a	n/a
28	CBX3	chr7:6398439-6399054	K562	blood:	n/a	n/a
29	CBX3	chr7:6398593-6399013	K562	blood:	n/a	n/a
30	CBX3	chr7:6388389-6389002	K562	blood:	n/a	n/a
31	CCNT2	chr7:6388438-6388902	K562	blood:	n/a	chr7:6388639-6388648
32	CEBPB	chr7:6392894-6393207	K562	blood:	n/a	chr7:6393040-6393051
33	CEBPB	chr7:6400670-6400785	HepG2	liver:	n/a	n/a
34	CEBPB	chr7:6388461-6388973	Hela-S3	cervix:	n/a	n/a
35	CEBPB	chr7:6392951-6393154	K562	blood:	n/a	chr7:6393040-6393051
36	CEBPB	chr7:6392857-6393218	HepG2	liver:	n/a	chr7:6393040-6393051
37	CEBPB	chr7:6392864-6393201	IMR90	lung:	n/a	chr7:6393040-6393051
38	CEBPB	chr7:6390518-6390648	A549	lung:	n/a	chr7:6390575-6390586
39	CEBPB	chr7:6388607-6388900	HepG2	liver:	n/a	n/a
40	CEBPB	chr7:6393016-6393102	Hela-S3	cervix:	n/a	chr7:6393040-6393051
41	CEBPB	chr7:6392904-6393211	A549	lung:	n/a	chr7:6393040-6393051
42	CEBPB	chr7:6388622-6388888	H1-hESC	embryonic stem cell:	n/a	n/a
43	CEBPB	chr7:6390462-6390715	HepG2	liver:	n/a	chr7:6390575-6390586
44	CEBPB	chr7:6392958-6393082	HepG2	liver:	n/a	chr7:6393040-6393051
45	CEBPB	chr7:6392891-6393171	H1-hESC	embryonic stem cell:	n/a	chr7:6393040-6393051
46	CEBPB	chr7:6392836-6393267	MCF-7	breast:	n/a	chr7:6393040-6393051
47	CEBPD	chr7:6388283-6388690	HepG2	liver:	n/a	n/a
48	CHD1	chr7:6388617-6388714	H1-hESC	embryonic stem cell:	n/a	n/a
49	CHD2	chr7:6388538-6388820	HepG2	liver:	n/a	n/a
50	CHD2	chr7:6388567-6388815	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:6388563-6388613	CMK	blood:	n/a
2	chr7:6388618-6388668	HCPEpiC	choroid plexus:	n/a
3	chr7:6389919-6389969	SK-N-SH_RA	brain:	n/a
4	chr7:6388563-6388613	CMK	blood:	n/a
5	chr7:6388618-6388668	HCPEpiC	choroid plexus:	n/a
6	chr7:6389919-6389969	SK-N-SH_RA	brain:	n/a
7	chr7:6388620-6388670	HCM	heart:	n/a
8	chr7:6388563-6388613	AG04450	lung:	fetal
9	chr7:6370717-6370767	H1-hESC	embryonic stem cell:	embryo
10	chr7:6369837-6369887	IMR90	lung:	fetal
11	chr7:6370368-6370418	HRE	kidney:	n/a
12	chr7:6388601-6388651	SAEC	small airway:	n/a
13	chr7:6388130-6388180	RPTEC	kidney:	n/a
14	chr7:6370717-6370767	HCF	heart:	n/a
15	chr7:6388591-6388641	HNPCEpiC	eye:	n/a
16	chr7:6369837-6369887	ovcar-3	ovarian:	n/a
17	chr7:6388738-6388788	NHDF-neo	bronchial:	n/a
18	chr7:6388872-6388922	AG04450	lung:	fetal
19	chr7:6370717-6370767	GM06990	blood:	n/a
20	chr7:6370185-6370235	GM12878	blood:	n/a
21	chr7:6370717-6370767	PANC-1	pancreas:	n/a
22	chr7:6388827-6388877	ECC-1	luminal epithelium:	n/a
23	chr7:6388695-6388745	IMR90	lung:	fetal
24	chr7:6391166-6391216	NHBE	bronchial:	n/a
25	chr7:6370316-6370366	BE2_C	brain:	n/a
26	chr7:6388742-6388792	PrEC	prostate:	n/a
27	chr7:6385721-6385771	HCF	heart:	n/a
28	chr7:6388742-6388792	HCT-116	colon:	n/a
29	chr7:6388827-6388877	HEEpiC	esophagus:	n/a
30	chr7:6388601-6388651	HCPEpiC	choroid plexus:	n/a
31	chr7:6385721-6385771	SK-N-SH	brain:	n/a
32	chr7:6388563-6388613	GM06990	blood:	n/a
33	chr7:6370368-6370418	H1-hESC	embryonic stem cell:	embryo
34	chr7:6388130-6388180	HIPEpiC	eye:	n/a
35	chr7:6388620-6388670	IMR90	lung:	fetal
36	chr7:6385721-6385771	ProgFib	skin:	n/a
37	chr7:6388827-6388877	NHBE	bronchial:	n/a
38	chr7:6370316-6370366	GM19239	blood:	n/a
39	chr7:6388738-6388788	LNCaP	prostate:	n/a
40	chr7:6388334-6388384	AG04450	lung:	fetal
41	chr7:6388130-6388180	PFSK-1	brain:	n/a
42	chr7:6388618-6388668	Hepatocyte	liver:	n/a
43	chr7:6370368-6370418	GM12892	blood:	n/a
44	chr7:6370717-6370767	AG09309	skin:	n/a
45	chr7:6388695-6388745	NHBE	bronchial:	n/a
46	chr7:6391166-6391216	RPTEC	kidney:	n/a
47	chr7:6388618-6388668	NHBE	bronchial:	n/a
48	chr7:6388130-6388180	AG09319	gingival:	n/a
49	chr7:6370316-6370366	NHBE	bronchial:	n/a
50	chr7:6391166-6391216	AG10803	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:6097568..6100190-chr7:6387069..6389785,3	MCF-7	breast:
2	chr7:6046534..6048837-chr7:6387102..6390061,2	MCF-7	breast:
3	chr7:6035426..6037082-chr7:6372151..6373884,2	MCF-7	breast:
4	chr7:6387247..6388755-chr7:6413232..6415374,2	MCF-7	breast:
5	chr7:6143046..6145933-chr7:6364932..6367512,2	K562	blood:
6	chr7:6120676..6122302-chr7:6388312..6390000,2	MCF-7	breast:
7	chr10:93169367..93170145-chr7:6388240..6389220,2	Hela-S3	cervix:
8	chr7:6379408..6381446-chr7:6384710..6386481,2	MCF-7	breast:
9	chr7:6377795..6380161-chr7:6386976..6388780,2	MCF-7	breast:
10	chr7:6399153..6401648-chr7:6412367..6414838,2	K562	blood:
11	chr7:6390235..6392804-chr7:6397143..6398713,2	K562	blood:
12	chr7:6388682..6389270-chr7:6443357..6444249,2	MCF-7	breast:
13	chr7:6381796..6384683-chr7:6387270..6389989,2	K562	blood:
14	chr7:6390235..6392804-chr7:6397143..6398713,2	K562	blood:
15	chr7:6383801..6385334-chr7:6385668..6388521,2	K562	blood:
16	chr7:6386514..6388780-chr7:6439968..6442713,2	MCF-7	breast:
17	chr7:6375428..6379947-chr7:6381885..6385915,4	K562	blood:
18	chr7:6047922..6050389-chr7:6388573..6391369,3	K562	blood:
19	chr7:6379408..6381446-chr7:6384710..6386481,2	MCF-7	breast:
20	chr7:6364887..6367442-chr7:6388475..6390006,2	K562	blood:
21	chr7:6377795..6380161-chr7:6386976..6388780,2	MCF-7	breast:
22	chr7:6049082..6051960-chr7:6388689..6390680,2	MCF-7	breast:
23	chr7:6362326..6363972-chr7:6370986..6373639,2	MCF-7	breast:
24	chr2:101868629..101869217-chr7:6397500..6398000,2	Hela-S3	cervix:
25	chr7:6396326..6398264-chr7:6414179..6415764,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAC1-2	chr7:6370213-6370871	NONHSAT118994
2	lnc-RAC1-2	chr7:6369092-6369444	NONHSAT118994

Variant related genes	Relation type
FAM220A	TF binding region
FAM220A	CpG island
ENSG00000136238	chromatin interactions
ENSG00000106305	chromatin interactions
ENSG00000231704	chromatin interactions
ENSG00000086232	chromatin interactions
ENSG00000178397	chromatin interactions
ENSG00000165338	chromatin interactions
ENSG00000122512	chromatin interactions
ENSG00000106346	chromatin interactions

Extended variants
information (count: 2013 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:2013 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200607588	chr7:6365545-6365546	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs183473412	chr7:6365552-6365553	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs367688581	chr7:6365562-6365563	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs539709686	chr7:6365563-6365564	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs558068382	chr7:6365581-6365582	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs73339258	chr7:6365588-6365589	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs146232677	chr7:6365620-6365621	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs201877066	chr7:6365680-6365681	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs74895077	chr7:6365697-6365698	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs397889010	chr7:6365699-6365700	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs530949689	chr7:6365710-6365711	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs139157933	chr7:6365739-6365740	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs376627010	chr7:6365751-6365752	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs189149514	chr7:6365753-6365754	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs567771799	chr7:6365763-6365764	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs541615260	chr7:6365766-6365767	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs149530457	chr7:6365767-6365768	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs533459297	chr7:6365784-6365785	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs545327136	chr7:6365827-6365828	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs181040300	chr7:6365838-6365839	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs369842857	chr7:6365862-6365863	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs376280489	chr7:6365869-6365870	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs184679174	chr7:6365870-6365871	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs144187731	chr7:6365909-6365910	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs534803493	chr7:6365911-6365912	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs113141087	chr7:6365918-6365919	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs547584640	chr7:6365919-6365920	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs565771484	chr7:6365945-6365946	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs539624554	chr7:6365954-6365955	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs10230835	chr7:6365966-6365967	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs189949571	chr7:6365981-6365982	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs181563391	chr7:6365982-6365983	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs537055402	chr7:6366019-6366020	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs117112965	chr7:6366040-6366041	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs573700202	chr7:6366076-6366077	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs534383397	chr7:6366087-6366088	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs553014495	chr7:6366095-6366096	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs577844279	chr7:6366114-6366115	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs545193606	chr7:6366120-6366121	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs74203240	chr7:6366141-6366142	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs369626288	chr7:6366162-6366163	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs34206056	chr7:6366167-6366168	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs34765032	chr7:6366168-6366169	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs144153251	chr7:6366176-6366177	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs543030587	chr7:6366223-6366224	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs561093699	chr7:6366224-6366225	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs373350392	chr7:6366229-6366230	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs546808114	chr7:6366239-6366240	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs557239679	chr7:6366253-6366254	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs533206409	chr7:6366283-6366284	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Lynch syndrome	22585707	CNVD
Follicular lymphoma	20505157	CNVD
Breast cancer	16397240	CNVD
Raine Syndrome	17924334	CNVD
Diffuse large b-cell lymphoma	21266526	CNVD
Melanoma	18172304	CNVD
Sudden cardiac death	19188705	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Glioma	18556773	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Bladder cancer	21909424	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	21045282	CNVD
Disorders of sex development	21048976	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Acute myeloid leukemia	21251322	CNVD
Glioblastoma multiforme	21525872	CNVD
early-passage human iPS cells	21368824	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:908 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6357800-6368800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:6357800-6369200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:6357800-6369200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:6357800-6369400	Weak transcription	Brain Anterior Caudate	brain
5	chr7:6357800-6369400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:6357800-6369600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:6357800-6369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:6357800-6369600	Weak transcription	Fetal Thymus	thymus
9	chr7:6357800-6369800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:6357800-6369800	Weak transcription	HSMMtube	muscle
11	chr7:6357800-6370200	Weak transcription	Fetal Intestine Small	intestine
12	chr7:6357800-6386200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:6358000-6366600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:6358000-6367400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr7:6358000-6369400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:6358000-6369400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:6358000-6369600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:6358000-6369600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:6358000-6370200	Weak transcription	Spleen	Spleen
20	chr7:6358000-6371600	Weak transcription	HMEC	breast
21	chr7:6358000-6372200	Weak transcription	NHDF-Ad	bronchial
22	chr7:6358000-6378400	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:6358000-6386000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:6358200-6366800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:6358200-6369200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr7:6358200-6369400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr7:6358200-6369400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:6358200-6369400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:6358200-6369600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:6358200-6369600	Weak transcription	Osteobl	bone
31	chr7:6358200-6369800	Weak transcription	Primary B cells from cord blood	blood
32	chr7:6358200-6370000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr7:6358200-6370000	Weak transcription	Lung	lung
34	chr7:6358200-6370200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:6358200-6372200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr7:6358200-6372400	Weak transcription	Right Atrium	heart
37	chr7:6358200-6387200	Weak transcription	HepG2	liver
38	chr7:6358200-6387600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr7:6358200-6387600	Weak transcription	HSMM	muscle
40	chr7:6358200-6387600	Weak transcription	NH-A	brain
41	chr7:6358400-6366600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:6358400-6369400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr7:6358400-6369400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr7:6358400-6369400	Weak transcription	Fetal Muscle Leg	muscle
45	chr7:6358400-6369400	Weak transcription	Left Ventricle	heart
46	chr7:6358400-6369600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:6358800-6369400	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr7:6360600-6370200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr7:6360800-6368800	Weak transcription	Fetal Brain Female	brain
50	chr7:6361800-6370200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links