Variant report

Variant	nsv539698
Chromosome Location	chr8:100336249-100852803
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3392)
CpG islands
(count:1102)
Chromatin interactive
region (count:265)
LncRNA
region (count:10)
Mature miRNA
region (count: 3)
miRNA target
sites (count:0)

(count:3392 , 50 per page) page: 1 2 3 4 5 6 7 ... 68

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr8:100400144-100400181	K562	blood:	n/a	n/a
2	ARID3A	chr8:100645951-100646742	HepG2	liver:	n/a	chr8:100645997-100646013
3	ARID3A	chr8:100819043-100819072	HepG2	liver:	n/a	n/a
4	ARID3A	chr8:100476490-100476616	HepG2	liver:	n/a	n/a
5	ARID3A	chr8:100649546-100649965	HepG2	liver:	n/a	n/a
6	ARID3A	chr8:100510905-100511524	HepG2	liver:	n/a	n/a
7	ARID3A	chr8:100694633-100695046	K562	blood:	n/a	n/a
8	ARID3A	chr8:100782433-100783021	K562	blood:	n/a	n/a
9	ARID3A	chr8:100783279-100784044	K562	blood:	n/a	n/a
10	ARID3A	chr8:100370824-100371122	HepG2	liver:	n/a	n/a
11	ARID3A	chr8:100768835-100768965	K562	blood:	n/a	n/a
12	ARID3A	chr8:100445541-100445734	HepG2	liver:	n/a	n/a
13	ARID3A	chr8:100370860-100371168	K562	blood:	n/a	n/a
14	ARID3A	chr8:100718258-100718424	K562	blood:	n/a	chr8:100718324-100718340
15	ARID3A	chr8:100416524-100416817	K562	blood:	n/a	n/a
16	ARID3A	chr8:100649502-100649902	K562	blood:	n/a	n/a
17	ARID3A	chr8:100519158-100519359	HepG2	liver:	n/a	n/a
18	ATF1	chr8:100468108-100468135	K562	blood:	n/a	n/a
19	ATF1	chr8:100515482-100515487	K562	blood:	n/a	n/a
20	ATF1	chr8:100649659-100649974	K562	blood:	n/a	n/a
21	ATF1	chr8:100609763-100609906	K562	blood:	n/a	n/a
22	ATF1	chr8:100370807-100371120	K562	blood:	n/a	n/a
23	ATF1	chr8:100654398-100654716	K562	blood:	n/a	n/a
24	ATF1	chr8:100782423-100783084	K562	blood:	n/a	n/a
25	ATF1	chr8:100416505-100416787	K562	blood:	n/a	n/a
26	ATF1	chr8:100783394-100783704	K562	blood:	n/a	n/a
27	ATF1	chr8:100617407-100617536	K562	blood:	n/a	n/a
28	ATF1	chr8:100718057-100718285	K562	blood:	n/a	n/a
29	ATF2	chr8:100667670-100668603	GM12878	blood:	n/a	n/a
30	ATF2	chr8:100675640-100676176	GM12878	blood:	n/a	n/a
31	ATF2	chr8:100675713-100676177	GM12878	blood:	n/a	n/a
32	ATF2	chr8:100845127-100845666	GM12878	blood:	n/a	n/a
33	ATF3	chr8:100717996-100718348	K562	blood:	n/a	n/a
34	BACH1	chr8:100740225-100740473	H1-hESC	embryonic stem cell:	n/a	n/a
35	BACH1	chr8:100783372-100784085	K562	blood:	n/a	chr8:100783561-100783575
36	BACH1	chr8:100783399-100783650	H1-hESC	embryonic stem cell:	n/a	chr8:100783561-100783575
37	BACH1	chr8:100721411-100721526	H1-hESC	embryonic stem cell:	n/a	n/a
38	BACH1	chr8:100694808-100695067	H1-hESC	embryonic stem cell:	n/a	n/a
39	BACH1	chr8:100740215-100740602	K562	blood:	n/a	n/a
40	BACH1	chr8:100395401-100395488	K562	blood:	n/a	n/a
41	BACH1	chr8:100389266-100389270	K562	blood:	n/a	n/a
42	BACH1	chr8:100782614-100782973	K562	blood:	n/a	n/a
43	BACH1	chr8:100694604-100695056	K562	blood:	n/a	n/a
44	BATF	chr8:100845234-100845617	GM12878	blood:	n/a	n/a
45	BATF	chr8:100510858-100511111	GM12878	blood:	n/a	chr8:100510967-100510978
46	BATF	chr8:100698390-100698700	GM12878	blood:	n/a	chr8:100698530-100698541
47	BATF	chr8:100510819-100511214	GM12878	blood:	n/a	chr8:100510967-100510978
48	BATF	chr8:100668748-100669124	GM12878	blood:	n/a	n/a
49	BATF	chr8:100667761-100668621	GM12878	blood:	n/a	n/a
50	BATF	chr8:100460738-100460975	GM12878	blood:	n/a	chr8:100460813-100460824

(count:1102 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:100811462-100811512	U87	brain:	n/a
2	chr8:100825020-100825070	Jurkat	blood:	n/a
3	chr8:100549849-100549899	U87	brain:	n/a
4	chr8:100708945-100708995	NHBE	bronchial:	n/a
5	chr8:100811462-100811512	U87	brain:	n/a
6	chr8:100825020-100825070	Jurkat	blood:	n/a
7	chr8:100549849-100549899	U87	brain:	n/a
8	chr8:100708945-100708995	NHBE	bronchial:	n/a
9	chr8:100549849-100549899	CMK	blood:	n/a
10	chr8:100825020-100825070	HPAEpiC	pulmonary alveolar:	n/a
11	chr8:100549776-100549826	GM06990	blood:	n/a
12	chr8:100464878-100464928	ProgFib	skin:	n/a
13	chr8:100795832-100795882	HUVEC	blood vessel:	n/a
14	chr8:100825020-100825070	HRCEpiC	kidney:	n/a
15	chr8:100549776-100549826	HEEpiC	esophagus:	n/a
16	chr8:100708945-100708995	H1-hESC	embryonic stem cell:	embryo
17	chr8:100825020-100825070	MCF10A-Er-Src	breast:	n/a
18	chr8:100770219-100770269	GM19239	blood:	n/a
19	chr8:100716071-100716121	NH-A	brain:	n/a
20	chr8:100811462-100811512	MCF10A-Er-Src	breast:	n/a
21	chr8:100667796-100667846	GM12878	blood:	n/a
22	chr8:100464878-100464928	Hela-S3	cervix:	n/a
23	chr8:100783034-100783084	HNPCEpiC	eye:	n/a
24	chr8:100783034-100783084	HIPEpiC	eye:	n/a
25	chr8:100549849-100549899	Caco-2	colon:	n/a
26	chr8:100770219-100770269	NHDF-neo	bronchial:	n/a
27	chr8:100716071-100716121	HepG2	liver:	n/a
28	chr8:100708621-100708671	SK-N-SH	brain:	n/a
29	chr8:100667796-100667846	U87	brain:	n/a
30	chr8:100549849-100549899	BE2_C	brain:	n/a
31	chr8:100464878-100464928	NHBE	bronchial:	n/a
32	chr8:100493491-100493541	HRCEpiC	kidney:	n/a
33	chr8:100635039-100635089	A549	lung:	n/a
34	chr8:100825020-100825070	HCT-116	colon:	n/a
35	chr8:100493491-100493541	MCF10A-Er-Src	breast:	n/a
36	chr8:100549849-100549899	LNCaP	prostate:	n/a
37	chr8:100783034-100783084	GM06990	blood:	n/a
38	chr8:100811462-100811512	GM12878	blood:	n/a
39	chr8:100708945-100708995	SK-N-SH	brain:	n/a
40	chr8:100795832-100795882	NB4	blood:	n/a
41	chr8:100635039-100635089	AoSMC	blood vessel:	n/a
42	chr8:100667796-100667846	HCM	heart:	n/a
43	chr8:100811462-100811512	HRE	kidney:	n/a
44	chr8:100708545-100708595	MCF10A-Er-Src	breast:	n/a
45	chr8:100811462-100811512	AoSMC	blood vessel:	n/a
46	chr8:100549849-100549899	HEK293	kidney:	embryo
47	chr8:100708621-100708671	SAEC	small airway:	n/a
48	chr8:100783034-100783084	PANC-1	pancreas:	n/a
49	chr8:100464878-100464928	GM06990	blood:	n/a
50	chr8:100649114-100649164	NH-A	brain:	n/a

(count:265 , 50 per page) page: 1 2 3 4 5 6

No.	Distal block	Cell Line	Cell type
1	chr8:100356710..100358343-chr8:100358891..100361073,2	K562	blood:
2	chr8:100793137..100796004-chr8:100796394..100798372,2	MCF-7	breast:
3	chr8:100525847..100527559-chr8:100529820..100532768,2	MCF-7	breast:
4	chr8:100719725..100721462-chr8:100723554..100725582,2	K562	blood:
5	chr8:100715916..100717513-chr8:100721890..100724335,2	K562	blood:
6	chr8:100830643..100832009-chr8:100917034..100918311,5	MCF-7	breast:
7	chr8:100761966..100763806-chr8:100767547..100770055,2	MCF-7	breast:
8	chr8:100403788..100404692-chr8:100799555..100800231,3	MCF-7	breast:
9	chr11:74032580..74033199-chr8:100370794..100371470,2	MCF-7	breast:
10	chr8:100189672..100191957-chr8:100789803..100791931,2	MCF-7	breast:
11	chr8:100550054..100551658-chr8:100559009..100560949,2	K562	blood:
12	chr8:100508680..100510316-chr8:100523382..100526217,2	MCF-7	breast:
13	chr8:100693782..100695662-chr8:100781246..100783612,2	K562	blood:
14	chr8:100637655..100639702-chr8:100646117..100648663,2	MCF-7	breast:
15	chr8:99180814..99181617-chr8:100370430..100371368,2	MCF-7	breast:
16	chr8:100474939..100477291-chr8:100497932..100499895,2	MCF-7	breast:
17	chr8:99952476..99953694-chr8:100370455..100371470,4	MCF-7	breast:
18	chr8:100446457..100448705-chr8:100452303..100454973,2	MCF-7	breast:
19	chr8:100404189..100404744-chr8:100799348..100800110,2	MCF-7	breast:
20	chr8:100684752..100688418-chr8:100691924..100694879,3	K562	blood:
21	chr8:100662125..100664863-chr8:100667158..100669715,2	MCF-7	breast:
22	chr8:100795883..100798408-chr8:100799586..100802427,2	MCF-7	breast:
23	chr8:100641638..100644745-chr8:100644767..100647893,3	K562	blood:
24	chr8:100558486..100560693-chr8:100576849..100579778,3	MCF-7	breast:
25	chr8:100844190..100847017-chr8:101086686..101088410,2	MCF-7	breast:
26	chr8:100550054..100551658-chr8:100559009..100560949,2	K562	blood:
27	chr8:100481937..100483971-chr8:100485663..100487345,2	MCF-7	breast:
28	chr8:100683905..100686290-chr8:100687390..100689544,2	MCF-7	breast:
29	chr8:100790764..100793031-chr8:100793544..100795545,2	K562	blood:
30	chr8:100785202..100786887-chr8:100791527..100794268,2	MCF-7	breast:
31	chr8:100629647..100631528-chr8:100671490..100673021,2	K562	blood:
32	chr8:100360393..100360964-chr8:100816462..100817102,2	MCF-7	breast:
33	chr8:100343791..100346575-chr8:100348119..100349870,2	MCF-7	breast:
34	chr5:179049397..179051041-chr8:100524000..100525807,2	MCF-7	breast:
35	chr8:100794282..100798252-chr8:100798462..100800680,3	K562	blood:
36	chr8:100801630..100804295-chr8:100808992..100812457,3	MCF-7	breast:
37	chr8:100772618..100774951-chr8:100776961..100779017,2	K562	blood:
38	chr8:100775611..100778222-chr8:100780671..100784308,3	K562	blood:
39	chr8:100403788..100404692-chr8:100799555..100800231,3	MCF-7	breast:
40	chr8:100340207..100341801-chr8:100343989..100346691,2	MCF-7	breast:
41	chr8:100762494..100764171-chr8:100764306..100765987,2	MCF-7	breast:
42	chr8:100793025..100795032-chr8:100811963..100814025,2	MCF-7	breast:
43	chr8:100566647..100568766-chr8:100572666..100574996,2	MCF-7	breast:
44	chr4:26518185..26518917-chr8:100791052..100791908,2	MCF-7	breast:
45	chr8:100494882..100496542-chr8:100496740..100499297,2	MCF-7	breast:
46	chr8:100415595..100418351-chr8:100620634..100623512,2	MCF-7	breast:
47	chr8:100464584..100466784-chr8:100489016..100491472,2	MCF-7	breast:
48	chr8:100774459..100776244-chr8:100778816..100780858,2	MCF-7	breast:
49	chr8:100381765..100384655-chr8:100392997..100394529,2	K562	blood:
50	chr8:100819052..100821758-chr8:100824612..100826902,3	K562	blood:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COX6C-1	chr8:100808843-100809357	ENSG00000253539.1
2	lnc-OSR2-7	chr8:100443749-100443892	NONHSAT127953
3	lnc-OSR2-7	chr8:100403785-100403932	NONHSAT127953
4	lnc-COX6C-2	chr8:100626014-100626306	NONHSAT127958
5	lnc-STK3-6	chr8:100352533-100353989	NONHSAT127951
6	lnc-OSR2-7	chr8:100401844-100401948	NONHSAT127953
7	lnc-COX6C-1	chr8:100811283-100811415	ENSG00000253539.1
8	lnc-OSR2-7	chr8:100441798-100441875	NONHSAT127953
9	lnc-STK3-7	chr8:100358280-100360484	NONHSAT127952
10	lnc-OSR2-7	chr8:100454629-100454639	NONHSAT127953

miRNA name	Chromosome Location	mirBase accession
hsa-miR-875-3p	chr8:100549025-100549045	MIMAT0004923
hsa-miR-599	chr8:100548879-100548898	MIMAT0003267
hsa-miR-875-5p	chr8:100549058-100549079	MIMAT0004922

No data

Variant related genes	Relation type
ENSG00000253912	TF binding region
RN7SL350P	TF binding region
VPS13B	TF binding region
MIR599	TF binding region
ENSG00000225017	TF binding region
MIR875	TF binding region
ENSG00000235683	TF binding region
ENSG00000206699	TF binding region
ENSG00000237704	TF binding region
ENSG00000253539	TF binding region
ENSG00000253912	CpG island
RN7SL350P	CpG island
VPS13B	CpG island
MIR599	CpG island
ENSG00000225017	CpG island
MIR875	CpG island
ENSG00000235683	CpG island
ENSG00000206699	CpG island
ENSG00000237704	CpG island
ENSG00000253539	CpG island
ENSG00000009307	chromatin interactions
ENSG00000216069	chromatin interactions
ENSG00000004779	chromatin interactions
ENSG00000253948	chromatin interactions
ENSG00000132549	chromatin interactions
ENSG00000243254	chromatin interactions
ENSG00000207804	chromatin interactions
ENSG00000225017	chromatin interactions
ENSG00000253539	chromatin interactions
ENSG00000253912	chromatin interactions
ENSG00000188029	chromatin interactions
ENSG00000169045	chromatin interactions
ENSG00000235683	chromatin interactions
ENSG00000206630	chromatin interactions
ENSG00000164920	chromatin interactions
ENSG00000260260	chromatin interactions
ENSG00000206699	chromatin interactions

Extended variants
information (count: 17248 )
Associated
traits (count: 111 )

Variant overlapped rSNPs/rCNVs (count:17248 , 50 per page) page: 1 2 3 4 5 6 7 ... 345

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139367196	chr8:100336261-100336262	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
2	rs531525772	chr8:100336303-100336304	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
3	rs377547323	chr8:100336358-100336359	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
4	rs551735058	chr8:100336376-100336377	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
5	rs571544933	chr8:100336418-100336419	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs527558272	chr8:100336428-100336429	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs74483735	chr8:100336435-100336436	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs2291548	chr8:100336447-100336448	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs560813907	chr8:100336467-100336468	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs535970201	chr8:100336485-100336486	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs188686703	chr8:100336502-100336503	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs569139202	chr8:100336531-100336532	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs2291547	chr8:100336535-100336536	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs143352154	chr8:100336577-100336578	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs181496290	chr8:100336611-100336612	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs577930787	chr8:100336674-100336675	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs540880086	chr8:100336680-100336681	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs553881724	chr8:100336725-100336726	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs568215496	chr8:100336767-100336768	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs375614856	chr8:100336770-100336771	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs536866054	chr8:100336898-100336899	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs185444488	chr8:100336900-100336901	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs562955614	chr8:100336907-100336908	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs531566628	chr8:100336939-100336940	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs144827447	chr8:100337005-100337006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs550347801	chr8:100337047-100337048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs565041694	chr8:100337062-100337063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs570643201	chr8:100337081-100337082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs542617370	chr8:100337093-100337094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs527602541	chr8:100337141-100337142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547626010	chr8:100337151-100337152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs567188815	chr8:100337156-100337157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs190364803	chr8:100337207-100337208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529744590	chr8:100337233-100337234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs34862314	chr8:100337247-100337248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529674027	chr8:100337272-100337273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs549637028	chr8:100337311-100337312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs560811545	chr8:100337312-100337313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs57879149	chr8:100337381-100337382	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs371993906	chr8:100337387-100337388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs3103710	chr8:100337418-100337419	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs113951406	chr8:100337443-100337444	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs534271187	chr8:100337475-100337476	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs3103709	chr8:100337529-100337530	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs376621470	chr8:100337567-100337568	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs573201260	chr8:100337583-100337584	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs56668101	chr8:100337585-100337586	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs556571223	chr8:100337669-100337670	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs576627637	chr8:100337723-100337724	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs535436854	chr8:100337820-100337821	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:111)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Multiple myeloma	16461302	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
head and neck squamous cell carcinoma	19451471	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Colorectal cancer	16774939	CNVD
Autosomal-dominant progressive external ophthalmoplegia	19664747	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	17260012	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Colorectal cancer	19455253	CNVD
Sezary syndrome	18413736	CNVD
Breast cancer	21611746	CNVD
Cohen syndrome	20461111	CNVD
Prostate cancer	22341455	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	17440070	CNVD

Chromatin state (count:5373 , 50 per page) page: 1 2 3 4 5 6 7 ... 108

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100326400-100354600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:100327000-100361800	Weak transcription	Aorta	Aorta
3	chr8:100328600-100343400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr8:100333400-100345000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:100333600-100347600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:100334000-100336400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:100334000-100336800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:100334400-100336400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:100334400-100337000	Enhancers	Fetal Kidney	kidney
10	chr8:100334600-100352800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr8:100334800-100337600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:100335200-100336400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:100335600-100338000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr8:100335800-100336400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:100335800-100336400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr8:100335800-100345600	Weak transcription	Primary B cells from cord blood	blood
17	chr8:100336000-100336400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:100336000-100336400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr8:100336200-100336400	Enhancers	Ovary	ovary
20	chr8:100336400-100337400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:100337000-100337600	Weak transcription	Fetal Kidney	kidney
22	chr8:100337400-100337600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr8:100337600-100337800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr8:100337600-100337800	Enhancers	Fetal Kidney	kidney
25	chr8:100337800-100338000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr8:100338200-100339200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr8:100338200-100340400	Weak transcription	Primary T cells from cord blood	blood
28	chr8:100338800-100339000	Enhancers	Pancreas	Pancrea
29	chr8:100338800-100340000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:100339000-100339400	Enhancers	NHDF-Ad	bronchial
31	chr8:100339000-100340200	Weak transcription	Pancreas	Pancrea
32	chr8:100339200-100340400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr8:100339400-100339800	Enhancers	HSMM	muscle
34	chr8:100339400-100339800	Weak transcription	NHDF-Ad	bronchial
35	chr8:100339600-100339800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:100339800-100340000	Enhancers	NHDF-Ad	bronchial
37	chr8:100339800-100343600	Weak transcription	HSMM	muscle
38	chr8:100339800-100350000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:100339800-100351600	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr8:100340000-100341200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:100340000-100342800	Weak transcription	NHDF-Ad	bronchial
42	chr8:100340200-100340400	Enhancers	Pancreas	Pancrea
43	chr8:100340400-100340800	Strong transcription	Primary T cells from cord blood	blood
44	chr8:100340400-100343000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr8:100340800-100345800	Weak transcription	Primary T cells from cord blood	blood
46	chr8:100340800-100351600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr8:100343400-100343600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr8:100343400-100345000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr8:100343800-100346400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr8:100345000-100345800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links