Variant report
Variant | nsv544020 |
---|---|
Chromosome Location | chr19:43260848-43741311 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:6666)
- CpG islands (count:3361)
- Chromatin interactive region (count:9)
- LncRNA region (count:76)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ATF1 | chr19:43733581-43733686 | K562 | blood: | n/a | n/a |
2 | ATF3 | chr19:43336336-43336928 | A549 | lung: | n/a | n/a |
3 | ATF3 | chr19:43355412-43355889 | A549 | lung: | n/a | n/a |
4 | ATF3 | chr19:43355048-43355947 | A549 | lung: | n/a | n/a |
5 | ATF3 | chr19:43335307-43336092 | A549 | lung: | n/a | n/a |
6 | ATF3 | chr19:43336349-43336838 | A549 | lung: | n/a | n/a |
7 | ATF3 | chr19:43686016-43686763 | A549 | lung: | n/a | n/a |
8 | ATF3 | chr19:43335349-43336094 | A549 | lung: | n/a | n/a |
9 | BATF | chr19:43442962-43443231 | GM12878 | blood: | n/a | n/a |
10 | BATF | chr19:43271446-43271728 | GM12878 | blood: | n/a | n/a |
11 | BATF | chr19:43302238-43302533 | GM12878 | blood: | n/a | chr19:43302344-43302355 |
12 | BATF | chr19:43613006-43613315 | GM12878 | blood: | n/a | chr19:43613110-43613121 |
13 | BATF | chr19:43552261-43552460 | GM12878 | blood: | n/a | chr19:43552319-43552330 |
14 | BATF | chr19:43588401-43588710 | GM12878 | blood: | n/a | n/a |
15 | BATF | chr19:43552186-43552537 | GM12878 | blood: | n/a | chr19:43552319-43552330 |
16 | BATF | chr19:43692397-43692675 | GM12878 | blood: | n/a | n/a |
17 | BATF | chr19:43692257-43692526 | GM12878 | blood: | n/a | n/a |
18 | BATF | chr19:43591924-43592150 | GM12878 | blood: | n/a | n/a |
19 | BATF | chr19:43711409-43711658 | GM12878 | blood: | n/a | n/a |
20 | BATF | chr19:43738081-43738296 | GM12878 | blood: | n/a | chr19:43738185-43738196 |
21 | BATF | chr19:43361555-43361754 | GM12878 | blood: | n/a | n/a |
22 | BCL3 | chr19:43336159-43337656 | A549 | lung: | n/a | chr19:43336227-43336234 |
23 | BCL3 | chr19:43336972-43337663 | A549 | lung: | n/a | n/a |
24 | BCL3 | chr19:43297507-43298116 | A549 | lung: | n/a | n/a |
25 | BCL3 | chr19:43354946-43356043 | A549 | lung: | n/a | n/a |
26 | BCL3 | chr19:43354910-43356058 | A549 | lung: | n/a | n/a |
27 | BCL3 | chr19:43323095-43323355 | GM12878 | blood: | n/a | n/a |
28 | BCL3 | chr19:43402518-43403428 | A549 | lung: | n/a | n/a |
29 | BCL3 | chr19:43336292-43336877 | A549 | lung: | n/a | n/a |
30 | BCL3 | chr19:43335292-43335990 | A549 | lung: | n/a | chr19:43335602-43335611 chr19:43335603-43335612 |
31 | BCL3 | chr19:43335242-43336126 | A549 | lung: | n/a | chr19:43335602-43335611 chr19:43335603-43335612 |
32 | BHLHE40 | chr19:43733601-43733620 | K562 | blood: | n/a | n/a |
33 | BHLHE40 | chr19:43427453-43427512 | GM12878 | blood: | n/a | n/a |
34 | BHLHE40 | chr19:43355572-43355890 | A549 | lung: | n/a | n/a |
35 | BHLHE40 | chr19:43582147-43582203 | K562 | blood: | n/a | n/a |
36 | BHLHE40 | chr19:43709323-43709343 | K562 | blood: | n/a | n/a |
37 | BHLHE40 | chr19:43385480-43385517 | K562 | blood: | n/a | n/a |
38 | BRCA1 | chr19:43265411-43265577 | Hela-S3 | cervix: | n/a | n/a |
39 | BRCA1 | chr19:43355288-43355847 | Hela-S3 | cervix: | n/a | n/a |
40 | BRCA1 | chr19:43624776-43624937 | Hela-S3 | cervix: | n/a | n/a |
41 | BRCA1 | chr19:43525934-43526309 | Hela-S3 | cervix: | n/a | n/a |
42 | BRCA1 | chr19:43297623-43297950 | Hela-S3 | cervix: | n/a | n/a |
43 | BRCA1 | chr19:43436723-43436914 | Hela-S3 | cervix: | n/a | n/a |
44 | CBX3 | chr19:43385431-43385838 | K562 | blood: | n/a | n/a |
45 | CBX3 | chr19:43385505-43385738 | K562 | blood: | n/a | n/a |
46 | CEBPB | chr19:43379145-43379767 | IMR90 | lung: | n/a | n/a |
47 | CEBPB | chr19:43517258-43517378 | A549 | lung: | n/a | chr19:43517348-43517359 |
48 | CEBPB | chr19:43496454-43496723 | HepG2 | liver: | n/a | n/a |
49 | CEBPB | chr19:43653804-43654163 | IMR90 | lung: | n/a | n/a |
50 | CEBPB | chr19:43328208-43328426 | Hela-S3 | cervix: | n/a | chr19:43328257-43328268 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43383986-43384036 | SK-N-SH | brain: | n/a |
2 | chr19:43709754-43709804 | AG04450 | lung: | fetal |
3 | chr19:43385047-43385097 | ovcar-3 | ovarian: | n/a |
4 | chr19:43514144-43514194 | HRCEpiC | kidney: | n/a |
5 | chr19:43697480-43697530 | HCF | heart: | n/a |
6 | chr19:43709832-43709882 | NHBE | bronchial: | n/a |
7 | chr19:43383986-43384036 | SK-N-SH | brain: | n/a |
8 | chr19:43709754-43709804 | AG04450 | lung: | fetal |
9 | chr19:43385047-43385097 | ovcar-3 | ovarian: | n/a |
10 | chr19:43514144-43514194 | HRCEpiC | kidney: | n/a |
11 | chr19:43697480-43697530 | HCF | heart: | n/a |
12 | chr19:43709832-43709882 | NHBE | bronchial: | n/a |
13 | chr19:43514144-43514194 | SK-N-SH | brain: | n/a |
14 | chr19:43531821-43531871 | U87 | brain: | n/a |
15 | chr19:43385047-43385097 | HAEpiC | amniotic membrane: | n/a |
16 | chr19:43383986-43384036 | HMEC | breast: | n/a |
17 | chr19:43383799-43383849 | HAEpiC | amniotic membrane: | n/a |
18 | chr19:43265778-43265828 | LNCaP | prostate: | n/a |
19 | chr19:43442484-43442534 | GM06990 | blood: | n/a |
20 | chr19:43697480-43697530 | Jurkat | blood: | n/a |
21 | chr19:43587500-43587550 | SK-N-SH_RA | brain: | n/a |
22 | chr19:43587500-43587550 | BE2_C | brain: | n/a |
23 | chr19:43442484-43442534 | Hepatocyte | liver: | n/a |
24 | chr19:43709654-43709704 | HIPEpiC | eye: | n/a |
25 | chr19:43442804-43442854 | HUVEC | blood vessel: | n/a |
26 | chr19:43588055-43588105 | IMR90 | lung: | fetal |
27 | chr19:43690622-43690672 | MCF-7 | breast: | n/a |
28 | chr19:43690622-43690672 | HCPEpiC | choroid plexus: | n/a |
29 | chr19:43359870-43359920 | CMK | blood: | n/a |
30 | chr19:43271004-43271054 | T-47D | breast: | n/a |
31 | chr19:43528994-43529044 | AG04449 | skin: | fetal |
32 | chr19:43530536-43530586 | HL-60 | blood: | n/a |
33 | chr19:43271004-43271054 | GM12878 | blood: | n/a |
34 | chr19:43588055-43588105 | HCT-116 | colon: | n/a |
35 | chr19:43442693-43442743 | HNPCEpiC | eye: | n/a |
36 | chr19:43421584-43421634 | BJ | skin: | n/a |
37 | chr19:43569592-43569642 | RPTEC | kidney: | n/a |
38 | chr19:43383405-43383455 | GM12892 | blood: | n/a |
39 | chr19:43271058-43271108 | NH-A | brain: | n/a |
40 | chr19:43442804-43442854 | HIPEpiC | eye: | n/a |
41 | chr19:43709654-43709704 | BE2_C | brain: | n/a |
42 | chr19:43269877-43269927 | AoSMC | blood vessel: | n/a |
43 | chr19:43680072-43680122 | HUVEC | blood vessel: | n/a |
44 | chr19:43588025-43588075 | HPAEpiC | pulmonary alveolar: | n/a |
45 | chr19:43271004-43271054 | ProgFib | skin: | n/a |
46 | chr19:43588069-43588119 | SK-N-MC | brain: | n/a |
47 | chr19:43360229-43360279 | NHDF-neo | bronchial: | n/a |
48 | chr19:43711064-43711114 | HRE | kidney: | n/a |
49 | chr19:43383405-43383455 | RPTEC | kidney: | n/a |
50 | chr19:43588025-43588075 | HAEpiC | amniotic membrane: | n/a |
(count:9 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:43523469..43524084-chr19:43531918..43532440,2 | MCF-7 | breast: | |
2 | chr19:43197633..43198568-chr19:43280847..43281639,2 | K562 | blood: | |
3 | chr19:43197647..43198196-chr19:43280850..43281744,2 | MCF-7 | breast: | |
4 | chr19:43678340..43681333-chr19:43698109..43700078,2 | MCF-7 | breast: | |
5 | chr19:43531581..43532101-chr2:1136088..1136613,2 | MCF-7 | breast: | |
6 | chr19:43297087..43297875-chr19:43423005..43423976,2 | MCF-7 | breast: | |
7 | chr19:43523469..43524084-chr19:43531918..43532440,2 | MCF-7 | breast: | |
8 | chr19:43265768..43266290-chr19:43769932..43770473,2 | MCF-7 | breast: | |
9 | chr19:43608137..43608719-chr19:43820621..43821519,2 | MCF-7 | breast: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PSG6-1 | chr19:43433594-43433872 | NR_073194 |
2 | lnc-PSG1-1 | chr19:43359708-43359870 | NONHSAT066571 |
3 | lnc-PSG8-1 | chr19:43290505-43290747 | NONHSAT066567 |
4 | lnc-PSG1-1 | chr19:43359708-43359870 | NONHSAT146988 |
5 | lnc-PSG2-3 | chr19:43600608-43600855 | NONHSAT066582 |
6 | lnc-CD177-1 | chr19:43657431-43657763 | ENSG00000227606.1 |
7 | lnc-PSG6-1 | chr19:43429925-43431729 | NONHSAT066573 |
8 | lnc-PSG9-2 | chr19:43715943-43716627 | NONHSAT066592 |
9 | lnc-PSG9-2 | chr19:43724140-43724394 | NONHSAT066591 |
10 | lnc-PSG5-1 | chr19:43698107-43698746 | NONHSAT066589 |
11 | lnc-PSG9-2 | chr19:43715943-43716627 | NONHSAT066591 |
12 | lnc-PSG9-2 | chr19:43727043-43727110 | NONHSAT066591 |
13 | lnc-PSG1-1 | chr19:43343520-43343530 | NONHSAT146988 |
14 | lnc-PSG4-3 | chr19:43674207-43674717 | NONHSAT066586 |
15 | lnc-CD177-1 | chr19:43659324-43659477 | ENSG00000227606.1 |
16 | lnc-PSG6-1 | chr19:43429925-43430179 | NR_073194 |
17 | lnc-PSG11-1 | chr19:43544526-43544780 | NONHSAT066579 |
18 | lnc-PSG2-5 | chr19:43519268-43519426 | NONHSAT066577 |
19 | lnc-PSG5-1 | chr19:43696890-43697540 | NONHSAT066588 |
20 | lnc-PSG5-1 | chr19:43698492-43699038 | NONHSAT066588 |
21 | lnc-CD177-1 | chr19:43665002-43665014 | ENSG00000227606.1 |
22 | lnc-PSG4-3 | chr19:43671924-43672287 | NONHSAT066585 |
23 | lnc-PSG9-2 | chr19:43724140-43724394 | NONHSAT066593 |
24 | lnc-PSG9-2 | chr19:43719405-43719531 | NONHSAT066591 |
25 | lnc-PSG2-2 | chr19:43576503-43576781 | NONHSAT066580 |
26 | lnc-PSG8-1 | chr19:43285358-43285449 | NONHSAT066567 |
27 | lnc-PSG1-1 | chr19:43348511-43348765 | NONHSAT066571 |
28 | lnc-PSG6-1 | chr19:43439556-43439921 | NR_073194 |
29 | lnc-PSG4-3 | chr19:43672274-43672355 | NONHSAT066586 |
30 | lnc-PSG4-2 | chr19:43688934-43689087 | NONHSAT066587 |
31 | lnc-PSG2-5 | chr19:43511982-43512194 | NONHSAT066576 |
32 | lnc-PSG1-1 | chr19:43349168-43349446 | NONHSAT146988 |
33 | lnc-PSG2-2 | chr19:43587104-43587197 | NONHSAT066580 |
34 | lnc-PSG2-3 | chr19:43601248-43601512 | NONHSAT066582 |
35 | lnc-PSG6-1 | chr19:43441165-43441330 | NR_073194 |
36 | lnc-PSG6-2 | chr19:43454299-43454539 | NONHSAT066575 |
37 | lnc-PSG2-5 | chr19:43514110-43514858 | NONHSAT066576 |
38 | lnc-PSG1-1 | chr19:43570669-43570753 | NONHSAT066570 |
39 | lnc-PSG1-1 | chr19:43343447-43343530 | NONHSAT066571 |
40 | lnc-PSG2-1 | chr19:43585939-43586423 | NONHSAT066581 |
41 | lnc-PSG11-1 | chr19:43545168-43545400 | NONHSAT066579 |
42 | lnc-PSG1-1 | chr19:43341149-43341534 | NONHSAT066571 |
43 | lnc-PSG6-1 | chr19:43440309-43440647 | NONHSAT066574 |
44 | lnc-PSG8-1 | chr19:43289879-43290117 | NONHSAT066567 |
45 | lnc-PSG9-2 | chr19:43734076-43734177 | NONHSAT066591 |
46 | lnc-PSG4-3 | chr19:43674207-43674723 | NONHSAT066585 |
47 | lnc-PSG2-5 | chr19:43514422-43514579 | NONHSAT066577 |
48 | lnc-PSG4-1 | chr19:43707241-43708403 | NONHSAT066590 |
49 | lnc-PSG2-4 | chr19:43521383-43521753 | NONHSAT066578 |
50 | lnc-PSG6-2 | chr19:43453655-43453909 | NONHSAT066575 |
No data |
No data |
Variant related genes | Relation type |
---|---|
CEACAMP7 | TF binding region |
PSG4 | TF binding region |
CEACAMP9 | TF binding region |
PSG8 | TF binding region |
CEACAMP8 | TF binding region |
PSG1 | TF binding region |
PSG2 | TF binding region |
ENSG00000227606 | TF binding region |
PSG5 | TF binding region |
PSG7 | TF binding region |
PSG11 | TF binding region |
ENSG00000225877 | TF binding region |
PSG6 | TF binding region |
CEACAMP10 | TF binding region |
CEACAMP6 | TF binding region |
PSG10P | TF binding region |
CEACAMP7 | CpG island |
PSG4 | CpG island |
CEACAMP9 | CpG island |
PSG8 | CpG island |
CEACAMP8 | CpG island |
PSG1 | CpG island |
PSG2 | CpG island |
ENSG00000227606 | CpG island |
PSG5 | CpG island |
PSG7 | CpG island |
PSG11 | CpG island |
ENSG00000225877 | CpG island |
PSG6 | CpG island |
CEACAMP10 | CpG island |
CEACAMP6 | CpG island |
PSG10P | CpG island |
ENSG00000243137 | chromatin interactions |
ENSG00000170848 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs369933454 | chr19:43260865-43260866 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs578056361 | chr19:43260877-43260878 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs185024308 | chr19:43260887-43260888 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs534404017 | chr19:43260933-43260934 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs554113961 | chr19:43260979-43260980 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs202206674 | chr19:43261033-43261034 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs573908411 | chr19:43261042-43261043 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs542868367 | chr19:43261063-43261064 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs370632504 | chr19:43261064-43261065 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs562864657 | chr19:43261127-43261128 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs574860147 | chr19:43261150-43261151 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs543902749 | chr19:43261152-43261153 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs374934782 | chr19:43261161-43261162 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs564187247 | chr19:43261177-43261178 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs532930584 | chr19:43261188-43261189 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs143295508 | chr19:43261196-43261197 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs74259590 | chr19:43261204-43261205 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs78280164 | chr19:43261209-43261210 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs2107515 | chr19:43261222-43261223 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs547143516 | chr19:43261223-43261224 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs560347583 | chr19:43261237-43261238 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs375100571 | chr19:43261246-43261247 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs549268644 | chr19:43261283-43261284 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs190630756 | chr19:43261284-43261285 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs371887553 | chr19:43261340-43261341 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs569188314 | chr19:43261350-43261351 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs373755790 | chr19:43261375-43261376 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs368541083 | chr19:43261383-43261384 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs192981124 | chr19:43261423-43261424 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs539395118 | chr19:43261426-43261427 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs372259710 | chr19:43261440-43261441 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs185316180 | chr19:43261441-43261442 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs139062966 | chr19:43261446-43261447 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs553853401 | chr19:43261454-43261455 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs149878057 | chr19:43261466-43261467 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs375062392 | chr19:43261467-43261468 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs536464971 | chr19:43261483-43261484 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs556424742 | chr19:43261491-43261492 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs576355963 | chr19:43261494-43261495 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs367879515 | chr19:43261532-43261533 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs544191479 | chr19:43261556-43261557 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
42 | rs563964757 | chr19:43261567-43261568 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs577574127 | chr19:43261568-43261569 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs539899274 | chr19:43261615-43261616 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
45 | rs560308975 | chr19:43261623-43261624 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs529062313 | chr19:43261628-43261629 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs369678967 | chr19:43261654-43261655 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs562770561 | chr19:43261675-43261676 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs58813858 | chr19:43261681-43261682 | Weak transcription | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
50 | rs10406779 | chr19:43261691-43261692 | Weak transcription | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
Disease | PMID | Source |
---|---|---|
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Cancer | 20164919 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Prostate cancer | 18632612 | CNVD |
Autism | 22495311 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Congenital nephrotic syndrome | 18421352 | CNVD |
Astrocytoma | 17934521 | CNVD |
Leukemia | 17361228 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Breast cancer | 21858162 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
renal disease | 20603712 | CNVD |
Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Breast cancer | 21364760 | CNVD |
Invasive pancreatic ductal carcinoma | 18765526 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Chordoma | 18071362 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Bladder cancer | 21909424 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Gastric cancer | 18160780 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Basal cell lymphoma | 19029149 | CNVD |
Breast cancer | 20409316 | CNVD |
Diffuse large b-cell lymphoma | 19029149 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Lung cancer | 18438408 | CNVD |
Ovarian clear cell carcinoma | 19293255 | CNVD |
Astrocytoma | 22246337 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 21509527 | CNVD |
Cancer | 20164920 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Ependymoma | 20639864 | CNVD |
Autism | 19492091 | CNVD |
Ovarian cancer | 20800559 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 16272173 | CNVD |
Spondylocostal dysostosis | 21085971 | CNVD |
Nicotine metabolism | 21956041 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Breast cancer | 17133270 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Melanoma | 20877625 | CNVD |
Ovarian cancer | 21240255 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Primary Severe Spermatogenic Failure | 20378930 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:43254000-43261800 | Weak transcription | Placenta | Placenta |
2 | chr19:43261800-43262600 | Strong transcription | Placenta | Placenta |
3 | chr19:43262600-43263200 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
4 | chr19:43262600-43264200 | Weak transcription | Placenta | Placenta |
5 | chr19:43263200-43264600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
6 | chr19:43263400-43263600 | Enhancers | NHLF | lung |
7 | chr19:43263400-43267600 | Enhancers | NHDF-Ad | bronchial |
8 | chr19:43263600-43264400 | Weak transcription | NHLF | lung |
9 | chr19:43263600-43267600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
10 | chr19:43264200-43264800 | Enhancers | Placenta | Placenta |
11 | chr19:43264200-43265000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
12 | chr19:43264200-43267200 | Enhancers | Osteobl | bone |
13 | chr19:43264400-43265400 | Enhancers | Foreskin Fibroblast Primary Cells skin02 | Skin |
14 | chr19:43264400-43266200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
15 | chr19:43264400-43267600 | Enhancers | Muscle Satellite Cultured Cells | -- |
16 | chr19:43264400-43267600 | Enhancers | NHLF | lung |
17 | chr19:43264600-43268000 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
18 | chr19:43264800-43265200 | Flanking Active TSS | Placenta | Placenta |
19 | chr19:43264800-43265400 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
20 | chr19:43264800-43265400 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
21 | chr19:43264800-43265800 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
22 | chr19:43264800-43265800 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
23 | chr19:43264800-43265800 | Enhancers | HSMM | muscle |
24 | chr19:43264800-43267400 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
25 | chr19:43264800-43267600 | Enhancers | HMEC | breast |
26 | chr19:43264800-43267600 | Enhancers | NH-A | brain |
27 | chr19:43265000-43265800 | Enhancers | A549 | lung |
28 | chr19:43265000-43266000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
29 | chr19:43265000-43266400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
30 | chr19:43265000-43267400 | Enhancers | NHEK | skin |
31 | chr19:43265000-43267600 | Enhancers | Hela-S3 | cervix |
32 | chr19:43265200-43265400 | Enhancers | Esophagus | oesophagus |
33 | chr19:43265200-43265400 | Active TSS | Placenta | Placenta |
34 | chr19:43265200-43265400 | Enhancers | Pancreas | Pancrea |
35 | chr19:43265200-43267800 | Enhancers | HSMMtube | muscle |
36 | chr19:43265400-43266400 | Weak transcription | Esophagus | oesophagus |
37 | chr19:43265400-43266400 | Weak transcription | Pancreas | Pancrea |
38 | chr19:43265400-43266600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
39 | chr19:43265400-43266600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
40 | chr19:43265400-43266600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
41 | chr19:43265400-43266600 | Weak transcription | Placenta | Placenta |
42 | chr19:43265800-43266200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
43 | chr19:43265800-43266200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
44 | chr19:43265800-43266200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
45 | chr19:43265800-43266200 | Weak transcription | HSMM | muscle |
46 | chr19:43265800-43266400 | Weak transcription | A549 | lung |
47 | chr19:43266000-43267000 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
48 | chr19:43266200-43266600 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
49 | chr19:43266200-43266600 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
50 | chr19:43266200-43267600 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |