Variant report

Variant nsv549265
Chromosome Location chr1:225395959-225462346
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225392400-225396200 Weak transcription Liver Liver
2 chr1:225393000-225397400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:225393000-225397400 Weak transcription Pancreas Pancrea
4 chr1:225395200-225399200 Enhancers HepG2 liver
5 chr1:225395600-225396200 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
6 chr1:225395600-225397400 Weak transcription Ovary ovary
7 chr1:225397400-225397800 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:225397400-225397800 ZNF genes & repeats Pancreas Pancrea
9 chr1:225397400-225398000 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:225397400-225398000 ZNF genes & repeats Fetal Intestine Small intestine
11 chr1:225397400-225398000 Strong transcription Ovary ovary
12 chr1:225397600-225398000 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
13 chr1:225398000-225400000 Weak transcription Ovary ovary
14 chr1:225398000-225404800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr1:225398000-225417800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:225404800-225406000 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
17 chr1:225405200-225405600 ZNF genes & repeats Pancreas Pancrea
18 chr1:225405400-225406600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr1:225406600-225409400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr1:225409400-225410000 Enhancers HepG2 liver
21 chr1:225409400-225411600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr1:225410000-225415200 Weak transcription HepG2 liver
23 chr1:225411200-225412800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr1:225411600-225413600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr1:225412400-225412600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr1:225412400-225412800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr1:225412400-225414000 Enhancers Placenta Placenta
28 chr1:225412600-225413200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr1:225412800-225413600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr1:225412800-225414600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
31 chr1:225413200-225414200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr1:225413600-225413800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr1:225413600-225414000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr1:225414000-225415800 Weak transcription Placenta Placenta
35 chr1:225414000-225416000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr1:225414200-225415200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:225414600-225414800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
38 chr1:225414800-225415000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
39 chr1:225415200-225416600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr1:225415200-225417200 Enhancers HepG2 liver
41 chr1:225415800-225417000 Enhancers Placenta Placenta
42 chr1:225416000-225416200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
43 chr1:225416000-225416600 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr1:225416600-225417000 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr1:225426000-225426600 ZNF genes & repeats Fetal Intestine Small intestine
46 chr1:225426200-225426600 ZNF genes & repeats Fetal Intestine Large intestine
47 chr1:225426200-225426800 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
48 chr1:225426200-225426800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:225426200-225427200 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
50 chr1:225426600-225426800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood

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