Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYA	chr11:55686843-55687013	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:55688616-55688637	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr11:55688250-55688251	A549	lung:	n/a	n/a
4	POLR2A	chr11:55688278-55688306	A549	lung:	n/a	n/a
5	POLR2A	chr11:55688227-55688235	A549	lung:	n/a	n/a
6	POLR2A	chr11:55688308-55688329	A549	lung:	n/a	n/a
7	STAT3	chr11:55689923-55690614	MCF10A-Er-Src	breast:	n/a	chr11:55690440-55690448

Variant related genes	Relation type
OR5W2	TF binding region

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554623417	chr11:55686849-55686850	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs191951987	chr11:55686851-55686852	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs114825178	chr11:55686867-55686868	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs182007249	chr11:55686892-55686893	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs148016962	chr11:55686896-55686897	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs545001681	chr11:55686952-55686953	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs559936124	chr11:55686957-55686958	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs373575683	chr11:55686977-55686978	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs527255685	chr11:55686979-55686980	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Renal cell carcinoma	18194544	CNVD
Glioblastoma multiforme	21138945	CNVD
Prostate cancer	18632612	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	17142309	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Multiple myeloma	16616336	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	20967226	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: