Variant report
Variant | nsv555093 |
---|---|
Chromosome Location | chr11:55707050-55763943 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:246)
- CpG islands (count:366)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:55735459-55735509 | BE2_C | brain: | n/a |
2 | chr11:55735459-55735509 | Jurkat | blood: | n/a |
3 | chr11:55737072-55737122 | AG10803 | skin: | n/a |
4 | chr11:55737045-55737095 | GM12878 | blood: | n/a |
5 | chr11:55749739-55749789 | HPAEpiC | pulmonary alveolar: | n/a |
6 | chr11:55753849-55753899 | ovcar-3 | ovarian: | n/a |
7 | chr11:55749739-55749789 | HMEC | breast: | n/a |
8 | chr11:55735459-55735509 | RPTEC | kidney: | n/a |
9 | chr11:55753849-55753899 | AG09309 | skin: | n/a |
10 | chr11:55737045-55737095 | RPTEC | kidney: | n/a |
11 | chr11:55753849-55753899 | AG09319 | gingival: | n/a |
12 | chr11:55735459-55735509 | U87 | brain: | n/a |
13 | chr11:55735459-55735509 | HEEpiC | esophagus: | n/a |
14 | chr11:55749739-55749789 | AG09319 | gingival: | n/a |
15 | chr11:55749739-55749789 | RPTEC | kidney: | n/a |
16 | chr11:55737045-55737095 | GM19239 | blood: | n/a |
17 | chr11:55735459-55735509 | AG09309 | skin: | n/a |
18 | chr11:55749739-55749789 | Caco-2 | colon: | n/a |
19 | chr11:55737045-55737095 | ovcar-3 | ovarian: | n/a |
20 | chr11:55737072-55737122 | BE2_C | brain: | n/a |
21 | chr11:55753849-55753899 | HIPEpiC | eye: | n/a |
22 | chr11:55749739-55749789 | HL-60 | blood: | n/a |
23 | chr11:55749739-55749789 | ovcar-3 | ovarian: | n/a |
24 | chr11:55749739-55749789 | MCF10A-Er-Src | breast: | n/a |
25 | chr11:55737045-55737095 | NT2-D1 | testis: | n/a |
26 | chr11:55737045-55737095 | HPAEpiC | pulmonary alveolar: | n/a |
27 | chr11:55735459-55735509 | A549 | lung: | n/a |
28 | chr11:55736968-55737018 | GM12878 | blood: | n/a |
29 | chr11:55737045-55737095 | NHBE | bronchial: | n/a |
30 | chr11:55749739-55749789 | HCT-116 | colon: | n/a |
31 | chr11:55749739-55749789 | H1-hESC | embryonic stem cell: | embryo |
32 | chr11:55737045-55737095 | NHDF-neo | bronchial: | n/a |
33 | chr11:55735459-55735509 | HCT-116 | colon: | n/a |
34 | chr11:55735459-55735509 | ProgFib | skin: | n/a |
35 | chr11:55737072-55737122 | SKMC | muscle: | n/a |
36 | chr11:55749739-55749789 | U87 | brain: | n/a |
37 | chr11:55753849-55753899 | HCT-116 | colon: | n/a |
38 | chr11:55735459-55735509 | HCF | heart: | n/a |
39 | chr11:55737072-55737122 | MCF-7 | breast: | n/a |
40 | chr11:55737072-55737122 | T-47D | breast: | n/a |
41 | chr11:55737045-55737095 | ProgFib | skin: | n/a |
42 | chr11:55736968-55737018 | SK-N-MC | brain: | n/a |
43 | chr11:55737045-55737095 | HepG2 | liver: | n/a |
44 | chr11:55749739-55749789 | ProgFib | skin: | n/a |
45 | chr11:55753849-55753899 | HRCEpiC | kidney: | n/a |
46 | chr11:55736968-55737018 | HL-60 | blood: | n/a |
47 | chr11:55736968-55737018 | AG10803 | skin: | n/a |
48 | chr11:55737072-55737122 | GM12891 | blood: | n/a |
49 | chr11:55737045-55737095 | MCF10A-Er-Src | breast: | n/a |
50 | chr11:55736968-55737018 | T-47D | breast: | n/a |
(count:2 , 50 per page) page:
1
(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-OR10AG1-1 | chr11:55724692-55725106 | NONHSAT021375 |
No data |
No data |
Variant related genes | Relation type |
---|---|
OR10AF1P | TF binding region |
OR7E5P | TF binding region |
OR10AK1P | TF binding region |
OR5I1 | TF binding region |
OR10AG1 | TF binding region |
OR5F1 | TF binding region |
OR10AF1P | CpG island |
OR7E5P | CpG island |
OR10AK1P | CpG island |
OR5I1 | CpG island |
OR10AG1 | CpG island |
OR5F1 | CpG island |
ENSG00000174970 | chromatin interactions |
ENSG00000167825 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs146527819 | chr11:55707151-55707152 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs573668452 | chr11:55707157-55707158 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs149135290 | chr11:55707159-55707160 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs10501341 | chr11:55707222-55707223 | Inactive region | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
5 | rs61894198 | chr11:55707232-55707233 | Inactive region | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
6 | rs143260248 | chr11:55707243-55707244 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs560716429 | chr11:55707274-55707275 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs187809455 | chr11:55707329-55707330 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
9 | rs17149079 | chr11:55707394-55707395 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs544297204 | chr11:55707415-55707416 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
11 | rs77189125 | chr11:55707416-55707417 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
12 | rs80343040 | chr11:55707447-55707448 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs531553979 | chr11:55707472-55707473 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs551016598 | chr11:55707566-55707567 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
15 | rs543533778 | chr11:55707633-55707634 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs565007913 | chr11:55707664-55707665 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs532625978 | chr11:55707676-55707677 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs192621955 | chr11:55707684-55707685 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs566653833 | chr11:55707696-55707697 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs527627462 | chr11:55707710-55707711 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs183000775 | chr11:55707716-55707717 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
22 | rs12290347 | chr11:55707799-55707800 | Inactive region | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
23 | rs4312084 | chr11:55707804-55707805 | Inactive region | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
24 | rs556308536 | chr11:55707819-55707820 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
25 | rs571287969 | chr11:55707825-55707826 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
26 | rs17598017 | chr11:55707892-55707893 | Inactive region | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
27 | rs554112038 | chr11:55707911-55707912 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
28 | rs141445660 | chr11:55707922-55707923 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
29 | rs4631897 | chr11:55707955-55707956 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
30 | rs538396177 | chr11:55707997-55707998 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
31 | rs375851745 | chr11:55708000-55708001 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
32 | rs576046426 | chr11:55708010-55708011 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
33 | rs558221912 | chr11:55708011-55708012 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
34 | rs543448563 | chr11:55708015-55708016 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
35 | rs555760782 | chr11:55708032-55708033 | Inactive region | TF binding regionChromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
36 | rs532542602 | chr11:55708153-55708154 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
37 | rs369118651 | chr11:55708156-55708157 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
38 | rs138455755 | chr11:55708161-55708162 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
39 | rs114781871 | chr11:55708199-55708200 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
40 | rs61894199 | chr11:55708221-55708222 | Inactive region | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
41 | rs188556676 | chr11:55708223-55708224 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
42 | rs549317947 | chr11:55708235-55708236 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs144025148 | chr11:55708248-55708249 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs17598045 | chr11:55708291-55708292 | Inactive region | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
45 | rs193155855 | chr11:55708336-55708337 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs571213436 | chr11:55708354-55708355 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs538365967 | chr11:55708369-55708370 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs543735035 | chr11:55708377-55708378 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs536415554 | chr11:55708407-55708408 | Inactive region | Chromatin interactive region | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs10751003 | chr11:55708439-55708440 | Inactive region | Chromatin interactive region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
Disease | PMID | Source |
---|---|---|
Wilms tumour | 21544195 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Gastric cancer | 17908304 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Autism | 22495311 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Intellectual disability | 22102821 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Glioblastoma multiforme | 21138945 | CNVD |
Prostate cancer | 18632612 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Breast cancer | 17142309 | CNVD |
Cancer | 20164919 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 21637783 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Chronic lymphocytic leukemia | 21795749 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Neuroblastoma | 21484798 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Oral cancer | 21386901 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 20837533 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Liposarcoma | 21253554 | CNVD |
Neuroblastoma | 18923524 | CNVD |
Neuroblastoma | 18664255 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Breast cancer | 21364760 | CNVD |
Schizophrenia | 20967226 | CNVD |
Lung cancer | 18438408 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Breast cancer | 22522925 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Pituitary adenoma | 18645599 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:55717000-55717400 | Enhancers | Pancreas | Pancrea |
2 | chr11:55730000-55734000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
3 | chr11:55733400-55734800 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
4 | chr11:55734000-55734200 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
5 | chr11:55734000-55734400 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
6 | chr11:55741000-55741400 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
7 | chr11:55741200-55742000 | Enhancers | HUES64 Cell Line | embryonic stem cell |
8 | chr11:55741400-55746000 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
9 | chr11:55742000-55742400 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
10 | chr11:55742400-55742600 | Enhancers | HUES64 Cell Line | embryonic stem cell |
11 | chr11:55742600-55745600 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
12 | chr11:55745600-55747000 | Enhancers | HUES64 Cell Line | embryonic stem cell |
13 | chr11:55745800-55747000 | Enhancers | HUES48 Cell Line | embryonic stem cell |
14 | chr11:55746000-55746800 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
15 | chr11:55746000-55746800 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
16 | chr11:55746000-55746800 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
17 | chr11:55746200-55747200 | Enhancers | H9 Cell Line | embryonic stem cell |
18 | chr11:55746200-55747400 | Enhancers | HUES6 Cell Line | embryonic stem cell |
19 | chr11:55746600-55747400 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
20 | chr11:55746800-55747400 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
21 | chr11:55747400-55753000 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
22 | chr11:55753000-55754000 | ZNF genes & repeats | HUES6 Cell Line | embryonic stem cell |
23 | chr11:55753400-55753600 | Enhancers | HUES64 Cell Line | embryonic stem cell |
24 | chr11:55753400-55753800 | Active TSS | iPS-20b Cell Line | embryonic stem cell |
25 | chr11:55753600-55754000 | Active TSS | HUES64 Cell Line | embryonic stem cell |
26 | chr11:55761200-55761400 | Enhancers | HUES64 Cell Line | embryonic stem cell |
27 | chr11:55761400-55762600 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
28 | chr11:55762600-55763600 | Enhancers | HUES64 Cell Line | embryonic stem cell |
29 | chr11:55762800-55764200 | Enhancers | iPS-15b Cell Line | embryonic stem cell |